Wall clock time and date at job start Wed Apr 1 2020 00:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47241 * 2 1 4 4 H 1.09002 * 109.47122 * 54.99996 * 3 2 1 5 5 C 1.50704 * 109.47385 * 175.00280 * 3 2 1 6 6 O 1.21280 * 119.99670 * 120.00312 * 5 3 2 7 7 N 1.34769 * 119.99779 * 299.99923 * 5 3 2 8 8 C 1.46502 * 119.99901 * 179.97438 * 7 5 3 9 9 C 1.53001 * 109.47013 * 180.02562 * 8 7 5 10 10 O 1.42894 * 110.88800 * 297.57493 * 9 8 7 11 11 C 1.55154 * 111.00303 * 173.65088 * 9 8 7 12 12 C 1.54321 * 102.94656 * 206.42540 * 11 9 8 13 13 N 1.47025 * 107.26599 * 22.19375 * 12 11 9 14 14 C 1.36939 * 125.64709 * 181.09580 * 13 12 11 15 15 H 1.07997 * 120.00265 * 173.81114 * 14 13 12 16 16 C 1.38813 * 120.00070 * 353.80720 * 14 13 12 17 17 N 1.31627 * 120.00093 * 6.81670 * 16 14 13 18 18 Si 1.86804 * 120.00266 * 186.80616 * 16 14 13 19 19 H 1.48505 * 109.46374 * 94.99290 * 18 16 14 20 20 H 1.48495 * 109.47271 * 214.99024 * 18 16 14 21 21 H 1.48497 * 109.47143 * 334.99611 * 18 16 14 22 22 C 1.47416 * 108.70829 * 1.06208 * 13 12 11 23 23 N 1.46506 * 109.47206 * 295.00696 * 3 2 1 24 24 C 1.46764 * 124.35200 * 119.72209 * 23 3 2 25 25 C 1.54657 * 105.38055 * 162.85010 * 24 23 3 26 26 C 1.54635 * 101.68561 * 25.76851 * 25 24 23 27 27 C 1.34425 * 124.34465 * 300.01811 * 23 3 2 28 28 O 1.21277 * 124.94069 * 0.43274 * 27 23 3 29 29 H 1.09003 * 109.47388 * 59.99531 * 1 2 3 30 30 H 1.09004 * 109.47010 * 299.99375 * 1 2 3 31 31 H 1.09004 * 109.46937 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47391 * 120.00460 * 2 1 3 33 33 H 1.09004 * 109.47010 * 240.00625 * 2 1 3 34 34 H 0.97008 * 120.00084 * 0.02562 * 7 5 3 35 35 H 1.08992 * 109.47363 * 300.00247 * 8 7 5 36 36 H 1.09004 * 109.46770 * 60.00364 * 8 7 5 37 37 H 0.96709 * 114.00062 * 59.30251 * 10 9 8 38 38 H 1.08998 * 110.72053 * 324.79114 * 11 9 8 39 39 H 1.08999 * 110.72134 * 88.06182 * 11 9 8 40 40 H 1.08997 * 109.88522 * 262.77608 * 12 11 9 41 41 H 1.08994 * 109.88583 * 141.60632 * 12 11 9 42 42 H 0.96996 * 120.00138 * 179.97438 * 17 16 14 43 43 H 1.09004 * 110.36851 * 217.03606 * 22 13 12 44 44 H 1.08997 * 110.37247 * 94.70563 * 22 13 12 45 45 H 1.08994 * 110.24259 * 281.98234 * 24 23 3 46 46 H 1.09000 * 110.24135 * 43.98406 * 24 23 3 47 47 H 1.08995 * 111.19849 * 267.59433 * 25 24 23 48 48 H 1.09003 * 110.82334 * 143.77710 * 25 24 23 49 49 H 1.08997 * 110.48522 * 216.30216 * 26 25 24 50 50 H 1.09008 * 110.59514 * 93.71824 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4443 0.1238 6 8 4.2216 1.9436 -0.7478 7 7 4.1298 0.8912 1.2030 8 6 5.5899 0.8924 1.3231 9 6 5.9947 0.2079 2.6302 10 8 5.4871 0.9231 3.7583 11 6 7.5353 0.0472 2.7198 12 6 7.7019 -1.1777 3.6436 13 7 6.4481 -1.9431 3.5838 14 6 6.1805 -3.0921 4.2792 15 1 5.1924 -3.5267 4.2445 16 6 7.1793 -3.6983 5.0287 17 7 8.3423 -3.1009 5.1809 18 14 6.8729 -5.3617 5.8217 19 1 7.3804 -6.4357 4.9305 20 1 7.5795 -5.4259 7.1262 21 1 5.4154 -5.5458 6.0385 22 6 5.5262 -1.2686 2.6520 23 7 1.6523 2.0976 -1.2518 24 6 0.8027 3.2915 -1.3331 25 6 1.0293 3.8603 -2.7533 26 6 1.4528 2.5943 -3.5338 27 6 2.0245 1.6789 -2.4738 28 8 2.7173 0.7082 -2.6943 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 3.5862 0.4915 1.9000 35 1 6.0242 0.3532 0.4813 36 1 5.9535 1.9200 1.3229 37 1 4.5236 1.0055 3.7708 38 1 7.9602 -0.1512 1.7359 39 1 7.9900 0.9315 3.1662 40 1 7.8869 -0.8485 4.6661 41 1 8.5299 -1.7949 3.2951 42 1 9.0401 -3.5244 5.7050 43 1 4.5013 -1.3359 3.0170 44 1 5.6050 -1.7063 1.6569 45 1 -0.2438 3.0198 -1.1951 46 1 1.1058 4.0218 -0.5828 47 1 1.8249 4.6052 -2.7572 48 1 0.1057 4.2761 -3.1561 49 1 2.2124 2.8400 -4.2758 50 1 0.5892 2.1318 -4.0119 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569764721.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:10 Heat of formation + Delta-G solvation = -87.059588 kcal Electronic energy + Delta-G solvation = -31050.065989 eV Core-core repulsion = 26885.214111 eV Total energy + Delta-G solvation = -4164.851878 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.06027 -39.53454 -38.31711 -36.51788 -35.16884 -35.09277 -34.08507 -32.09991 -31.28144 -29.72223 -28.61735 -27.82968 -27.13895 -25.50468 -23.55444 -22.58880 -22.22024 -21.20142 -20.11995 -19.99043 -19.22598 -17.76068 -17.19183 -16.91428 -16.79762 -16.11743 -15.56711 -15.34590 -14.89546 -14.68975 -14.67154 -14.30894 -14.16212 -13.89283 -13.76493 -13.60543 -13.41169 -13.26288 -12.90133 -12.87834 -12.79955 -12.32286 -12.11082 -11.91906 -11.88724 -11.69645 -11.50240 -11.39264 -11.25081 -11.01309 -10.88456 -10.71536 -10.34997 -10.22042 -10.10698 -9.91145 -9.75913 -9.73505 -9.43153 -9.06871 -8.87922 -8.56709 -6.81988 -5.72169 -3.04830 2.38775 2.57315 2.68195 3.22006 3.40325 3.45024 3.47426 4.06429 4.12963 4.44360 4.45820 4.48815 4.51174 4.58427 4.62658 4.76371 4.89267 4.96453 5.06937 5.13614 5.15338 5.19016 5.34723 5.37582 5.39953 5.48895 5.51590 5.62131 5.64996 5.67961 5.79636 5.86946 5.95307 5.97811 6.18913 6.24445 6.34485 6.37040 6.43900 6.56140 6.63087 6.92763 7.39544 7.55704 7.64046 7.83341 7.97405 8.06560 8.20478 8.25648 9.20905 9.81286 10.47203 11.40008 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019800 B = 0.002566 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.819764 B =10911.332148 C =11556.421800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.139 4.139 3 C 0.144 3.856 4 H 0.113 0.887 5 C 0.503 3.497 6 O -0.521 6.521 7 N -0.725 5.725 8 C 0.107 3.893 9 C 0.102 3.898 10 O -0.537 6.537 11 C -0.128 4.128 12 C 0.181 3.819 13 N -0.598 5.598 14 C -0.230 4.230 15 H 0.077 0.923 16 C -0.006 4.006 17 N -0.918 5.918 18 Si 0.911 3.089 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.281 1.281 22 C 0.118 3.882 23 N -0.607 5.607 24 C 0.105 3.895 25 C -0.130 4.130 26 C -0.154 4.154 27 C 0.525 3.475 28 O -0.514 6.514 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.397 0.603 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.362 0.638 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.253 0.747 43 H 0.037 0.963 44 H 0.028 0.972 45 H 0.073 0.927 46 H 0.077 0.923 47 H 0.083 0.917 48 H 0.089 0.911 49 H 0.100 0.900 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.997 15.601 -12.860 27.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.177 4.177 3 C 0.037 3.963 4 H 0.131 0.869 5 C 0.287 3.713 6 O -0.395 6.395 7 N -0.378 5.378 8 C -0.017 4.017 9 C 0.060 3.940 10 O -0.340 6.340 11 C -0.167 4.167 12 C 0.057 3.943 13 N -0.324 5.324 14 C -0.358 4.358 15 H 0.095 0.905 16 C -0.203 4.203 17 N -0.565 5.565 18 Si 0.742 3.258 19 H -0.216 1.216 20 H -0.217 1.217 21 H -0.207 1.207 22 C -0.009 4.009 23 N -0.342 5.342 24 C -0.018 4.018 25 C -0.168 4.168 26 C -0.195 4.195 27 C 0.313 3.687 28 O -0.388 6.388 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.232 0.768 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.208 0.792 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.055 0.945 44 H 0.045 0.955 45 H 0.091 0.909 46 H 0.095 0.905 47 H 0.101 0.899 48 H 0.108 0.892 49 H 0.119 0.881 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -17.319 15.299 -13.261 26.643 hybrid contribution -0.932 -1.044 0.742 1.585 sum -18.251 14.254 -12.519 26.325 Atomic orbital electron populations 1.21705 0.94552 1.02244 1.01705 1.21928 0.97131 0.93981 1.04706 1.20873 0.92034 0.95840 0.87510 0.86916 1.20771 0.90379 0.78336 0.81791 1.90716 1.65020 1.44524 1.39248 1.45929 1.08205 1.60504 1.23166 1.22021 0.79352 1.01715 0.98657 1.22725 0.96767 0.91365 0.83172 1.86645 1.24779 1.76979 1.45635 1.22905 0.91001 1.01339 1.01420 1.21146 0.88967 0.87747 0.96479 1.44343 1.12337 1.26891 1.48864 1.19019 0.96046 0.98249 1.22520 0.90532 1.24828 0.96027 0.98866 1.00566 1.69978 1.04759 1.37674 1.44107 0.86111 0.77301 0.83998 0.78417 1.21601 1.21750 1.20667 1.22118 0.94267 0.90172 0.94334 1.47911 1.51240 1.29848 1.05224 1.22133 0.94493 0.86650 0.98522 1.22604 1.03044 0.97194 0.93959 1.22312 1.03058 0.96008 0.98095 1.20738 0.79049 0.84938 0.83963 1.90732 1.36593 1.28003 1.83456 0.92745 0.92522 0.92078 0.90045 0.89520 0.76803 0.90420 0.90908 0.79205 0.90879 0.90957 0.93505 0.93466 0.93702 0.94517 0.95485 0.90894 0.90468 0.89855 0.89235 0.88115 0.88038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.80 37.16 0.36 -0.68 16 2 C -0.14 -1.32 5.30 -26.73 -0.14 -1.46 16 3 C 0.14 1.41 2.67 -69.08 -0.18 1.22 16 4 H 0.11 0.74 8.07 -51.93 -0.42 0.32 16 5 C 0.50 6.83 6.86 -10.99 -0.08 6.75 16 6 O -0.52 -9.28 14.89 -9.04 -0.13 -9.42 16 7 N -0.72 -9.00 5.03 -60.29 -0.30 -9.30 16 8 C 0.11 1.59 4.90 -4.04 -0.02 1.57 16 9 C 0.10 1.75 0.95 -88.47 -0.08 1.67 16 10 O -0.54 -9.12 13.19 -35.23 -0.46 -9.59 16 11 C -0.13 -2.46 6.16 -24.90 -0.15 -2.61 16 12 C 0.18 4.50 5.38 -3.06 -0.02 4.48 16 13 N -0.60 -15.32 3.39 -170.08 -0.58 -15.90 16 14 C -0.23 -6.44 10.26 -15.06 -0.15 -6.60 16 15 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 16 C -0.01 -0.18 5.48 -17.43 -0.10 -0.27 16 17 N -0.92 -27.31 10.36 55.49 0.58 -26.74 16 18 Si 0.91 22.24 29.56 -169.99 -5.02 17.21 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 C 0.12 2.36 5.93 -2.53 -0.01 2.35 16 23 N -0.61 -5.88 2.08 -166.05 -0.34 -6.22 16 24 C 0.10 0.59 7.31 -3.03 -0.02 0.56 16 25 C -0.13 -0.64 7.19 -25.00 -0.18 -0.82 16 26 C -0.15 -1.17 6.86 -26.74 -0.18 -1.35 16 27 C 0.53 6.47 6.68 -10.86 -0.07 6.39 16 28 O -0.51 -8.82 15.35 -9.04 -0.14 -8.96 16 29 H 0.05 0.39 7.75 -51.93 -0.40 -0.01 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.70 7.43 -51.93 -0.39 0.32 16 33 H 0.09 1.11 6.62 -51.93 -0.34 0.77 16 34 H 0.40 3.98 6.66 -40.82 -0.27 3.71 16 35 H 0.08 1.27 8.11 -51.93 -0.42 0.85 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.36 4.54 8.16 45.56 0.37 4.91 16 38 H 0.07 1.29 8.01 -51.93 -0.42 0.87 16 39 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.05 1.30 7.55 -51.93 -0.39 0.91 16 41 H 0.05 1.28 7.36 -51.93 -0.38 0.90 16 42 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 43 H 0.04 0.68 7.97 -51.93 -0.41 0.26 16 44 H 0.03 0.56 8.04 -51.93 -0.42 0.14 16 45 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 46 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 49 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 50 H 0.10 0.58 8.14 -51.92 -0.42 0.16 16 LS Contribution 396.18 15.07 5.97 5.97 Total: -1.00 -38.08 396.18 -9.14 -47.22 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -7.67 Total: 4.51 kcal Atomic # 6 Polarization: 12.23 SS G_CDS: -1.03 Total: 11.20 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: -0.65 Total: -58.16 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -0.74 Total: -27.96 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -38.08 -9.14 -47.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569764721.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.835 kcal (2) G-P(sol) polarization free energy of solvation -38.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds