Wall clock time and date at job start Wed Apr 1 2020 00:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47241 * 2 1 4 4 H 1.09002 * 109.47122 * 54.99996 * 3 2 1 5 5 C 1.50704 * 109.47385 * 175.00280 * 3 2 1 6 6 O 1.21280 * 119.99670 * 120.00312 * 5 3 2 7 7 N 1.34769 * 119.99779 * 299.99923 * 5 3 2 8 8 C 1.46502 * 119.99901 * 179.97438 * 7 5 3 9 9 C 1.53001 * 109.47013 * 180.02562 * 8 7 5 10 10 O 1.42894 * 110.88800 * 297.57493 * 9 8 7 11 11 C 1.55154 * 111.00303 * 173.65088 * 9 8 7 12 12 C 1.54321 * 102.94656 * 206.42540 * 11 9 8 13 13 N 1.47025 * 107.26599 * 22.19375 * 12 11 9 14 14 C 1.36939 * 125.64709 * 181.09580 * 13 12 11 15 15 H 1.07997 * 120.00265 * 173.81114 * 14 13 12 16 16 C 1.38813 * 120.00070 * 353.80720 * 14 13 12 17 17 N 1.31627 * 120.00093 * 6.81670 * 16 14 13 18 18 Si 1.86804 * 120.00266 * 186.80616 * 16 14 13 19 19 H 1.48505 * 109.46374 * 94.99290 * 18 16 14 20 20 H 1.48495 * 109.47271 * 214.99024 * 18 16 14 21 21 H 1.48497 * 109.47143 * 334.99611 * 18 16 14 22 22 C 1.47416 * 108.70829 * 1.06208 * 13 12 11 23 23 N 1.46506 * 109.47206 * 295.00696 * 3 2 1 24 24 C 1.46764 * 124.35200 * 119.72209 * 23 3 2 25 25 C 1.54657 * 105.38055 * 162.85010 * 24 23 3 26 26 C 1.54635 * 101.68561 * 25.76851 * 25 24 23 27 27 C 1.34425 * 124.34465 * 300.01811 * 23 3 2 28 28 O 1.21277 * 124.94069 * 0.43274 * 27 23 3 29 29 H 1.09003 * 109.47388 * 59.99531 * 1 2 3 30 30 H 1.09004 * 109.47010 * 299.99375 * 1 2 3 31 31 H 1.09004 * 109.46937 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47391 * 120.00460 * 2 1 3 33 33 H 1.09004 * 109.47010 * 240.00625 * 2 1 3 34 34 H 0.97008 * 120.00084 * 0.02562 * 7 5 3 35 35 H 1.08992 * 109.47363 * 300.00247 * 8 7 5 36 36 H 1.09004 * 109.46770 * 60.00364 * 8 7 5 37 37 H 0.96709 * 114.00062 * 59.30251 * 10 9 8 38 38 H 1.08998 * 110.72053 * 324.79114 * 11 9 8 39 39 H 1.08999 * 110.72134 * 88.06182 * 11 9 8 40 40 H 1.08997 * 109.88522 * 262.77608 * 12 11 9 41 41 H 1.08994 * 109.88583 * 141.60632 * 12 11 9 42 42 H 0.96996 * 120.00138 * 179.97438 * 17 16 14 43 43 H 1.09004 * 110.36851 * 217.03606 * 22 13 12 44 44 H 1.08997 * 110.37247 * 94.70563 * 22 13 12 45 45 H 1.08994 * 110.24259 * 281.98234 * 24 23 3 46 46 H 1.09000 * 110.24135 * 43.98406 * 24 23 3 47 47 H 1.08995 * 111.19849 * 267.59433 * 25 24 23 48 48 H 1.09003 * 110.82334 * 143.77710 * 25 24 23 49 49 H 1.08997 * 110.48522 * 216.30216 * 26 25 24 50 50 H 1.09008 * 110.59514 * 93.71824 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4443 0.1238 6 8 4.2216 1.9436 -0.7478 7 7 4.1298 0.8912 1.2030 8 6 5.5899 0.8924 1.3231 9 6 5.9947 0.2079 2.6302 10 8 5.4871 0.9231 3.7583 11 6 7.5353 0.0472 2.7198 12 6 7.7019 -1.1777 3.6436 13 7 6.4481 -1.9431 3.5838 14 6 6.1805 -3.0921 4.2792 15 1 5.1924 -3.5267 4.2445 16 6 7.1793 -3.6983 5.0287 17 7 8.3423 -3.1009 5.1809 18 14 6.8729 -5.3617 5.8217 19 1 7.3804 -6.4357 4.9305 20 1 7.5795 -5.4259 7.1262 21 1 5.4154 -5.5458 6.0385 22 6 5.5262 -1.2686 2.6520 23 7 1.6523 2.0976 -1.2518 24 6 0.8027 3.2915 -1.3331 25 6 1.0293 3.8603 -2.7533 26 6 1.4528 2.5943 -3.5338 27 6 2.0245 1.6789 -2.4738 28 8 2.7173 0.7082 -2.6943 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 3.5862 0.4915 1.9000 35 1 6.0242 0.3532 0.4813 36 1 5.9535 1.9200 1.3229 37 1 4.5236 1.0055 3.7708 38 1 7.9602 -0.1512 1.7359 39 1 7.9900 0.9315 3.1662 40 1 7.8869 -0.8485 4.6661 41 1 8.5299 -1.7949 3.2951 42 1 9.0401 -3.5244 5.7050 43 1 4.5013 -1.3359 3.0170 44 1 5.6050 -1.7063 1.6569 45 1 -0.2438 3.0198 -1.1951 46 1 1.1058 4.0218 -0.5828 47 1 1.8249 4.6052 -2.7572 48 1 0.1057 4.2761 -3.1561 49 1 2.2124 2.8400 -4.2758 50 1 0.5892 2.1318 -4.0119 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569764721.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:09 Heat of formation + Delta-G solvation = -116.122547 kcal Electronic energy + Delta-G solvation = -31051.326254 eV Core-core repulsion = 26885.214111 eV Total energy + Delta-G solvation = -4166.112143 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.91145 -40.72296 -39.67100 -37.39824 -36.78936 -35.93343 -35.24933 -34.01955 -31.89941 -31.47140 -30.05639 -28.44501 -28.24700 -27.16067 -25.19018 -23.32582 -22.70648 -22.50727 -21.71843 -21.44786 -20.19752 -18.95238 -18.70763 -17.93299 -17.66367 -17.30120 -16.73931 -16.65152 -16.41448 -15.91030 -15.81323 -15.57193 -15.36831 -15.07965 -14.94313 -14.56545 -14.37856 -14.33176 -13.96087 -13.88193 -13.76155 -13.50692 -13.28648 -13.27169 -12.98680 -12.93022 -12.80036 -12.41026 -12.37219 -12.14921 -12.11938 -12.02017 -11.96751 -11.82969 -11.80267 -11.73478 -11.06183 -10.91951 -10.69277 -10.64373 -10.21411 -9.66234 -8.90274 -7.87258 -5.22118 1.44801 1.47501 1.49862 1.55977 1.57908 1.93291 2.27028 2.47876 3.14557 3.32098 3.39027 3.45052 3.58980 3.65992 3.71763 3.83836 3.90145 3.94555 3.97817 4.11095 4.21416 4.36465 4.43755 4.47827 4.55417 4.62219 4.69672 4.71032 4.77515 4.79999 4.89316 4.90314 4.92110 5.04587 5.05927 5.10896 5.15908 5.25733 5.27479 5.35566 5.43665 5.57930 5.61048 5.72652 6.17049 6.19734 6.40208 6.80955 7.07329 7.12514 7.29194 7.74506 8.39453 9.24167 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019800 B = 0.002566 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.819764 B =10911.332148 C =11556.421800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.135 4.135 3 C 0.145 3.855 4 H 0.157 0.843 5 C 0.499 3.501 6 O -0.568 6.568 7 N -0.714 5.714 8 C 0.123 3.877 9 C 0.126 3.874 10 O -0.549 6.549 11 C -0.122 4.122 12 C 0.190 3.810 13 N -0.620 5.620 14 C -0.242 4.242 15 H 0.086 0.914 16 C -0.068 4.068 17 N -0.951 5.951 18 Si 0.979 3.021 19 H -0.289 1.289 20 H -0.296 1.296 21 H -0.263 1.263 22 C 0.114 3.886 23 N -0.606 5.606 24 C 0.098 3.902 25 C -0.120 4.120 26 C -0.152 4.152 27 C 0.506 3.494 28 O -0.578 6.578 29 H 0.053 0.947 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.089 0.911 33 H 0.045 0.955 34 H 0.412 0.588 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.384 0.616 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.007 0.993 41 H 0.011 0.989 42 H 0.247 0.753 43 H 0.058 0.942 44 H 0.026 0.974 45 H 0.103 0.897 46 H 0.091 0.909 47 H 0.077 0.923 48 H 0.124 0.876 49 H 0.092 0.908 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.706 17.243 -12.702 31.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.174 4.174 3 C 0.039 3.961 4 H 0.174 0.826 5 C 0.284 3.716 6 O -0.446 6.446 7 N -0.368 5.368 8 C -0.002 4.002 9 C 0.083 3.917 10 O -0.356 6.356 11 C -0.161 4.161 12 C 0.065 3.935 13 N -0.346 5.346 14 C -0.370 4.370 15 H 0.104 0.896 16 C -0.261 4.261 17 N -0.600 5.600 18 Si 0.807 3.193 19 H -0.216 1.216 20 H -0.222 1.222 21 H -0.188 1.188 22 C -0.012 4.012 23 N -0.339 5.339 24 C -0.023 4.023 25 C -0.158 4.158 26 C -0.192 4.192 27 C 0.296 3.704 28 O -0.458 6.458 29 H 0.072 0.928 30 H 0.101 0.899 31 H 0.076 0.924 32 H 0.107 0.893 33 H 0.064 0.936 34 H 0.249 0.751 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.233 0.767 38 H 0.107 0.893 39 H 0.103 0.897 40 H 0.025 0.975 41 H 0.029 0.971 42 H 0.056 0.944 43 H 0.077 0.923 44 H 0.044 0.956 45 H 0.121 0.879 46 H 0.109 0.891 47 H 0.095 0.905 48 H 0.142 0.858 49 H 0.111 0.889 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -21.129 16.985 -13.086 30.103 hybrid contribution 0.188 -1.530 0.683 1.686 sum -20.941 15.455 -12.403 28.831 Atomic orbital electron populations 1.21665 0.92348 1.02537 1.02936 1.21882 0.98943 0.93467 1.03091 1.21037 0.89177 0.96755 0.89179 0.82585 1.21555 0.92072 0.77075 0.80852 1.90699 1.66420 1.46651 1.40784 1.45787 1.07184 1.60274 1.23564 1.21654 0.80982 1.01211 0.96380 1.22323 0.95017 0.89916 0.84410 1.86613 1.26992 1.76518 1.45458 1.22791 0.93273 0.99097 1.00927 1.20833 0.88126 0.89201 0.95347 1.44634 1.13582 1.26929 1.49483 1.19468 0.96421 0.99059 1.22093 0.89602 1.25718 0.96024 1.02463 1.01903 1.70208 1.05615 1.39042 1.45150 0.85048 0.77933 0.79385 0.76906 1.21649 1.22238 1.18781 1.22317 0.94415 0.91442 0.92981 1.48136 1.50771 1.30596 1.04431 1.22509 0.95274 0.85327 0.99229 1.22656 1.04389 0.95552 0.93173 1.22366 1.03303 0.96533 0.97040 1.21628 0.78328 0.84626 0.85862 1.90685 1.39584 1.30848 1.84656 0.92758 0.89906 0.92360 0.89253 0.93597 0.75128 0.91955 0.90521 0.76682 0.89312 0.89701 0.97480 0.97114 0.94419 0.92333 0.95646 0.87913 0.89089 0.90471 0.85797 0.88941 0.86041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.80 71.98 0.71 -0.87 16 2 C -0.14 -2.35 5.30 30.59 0.16 -2.19 16 3 C 0.15 2.48 2.67 44.24 0.12 2.60 16 4 H 0.16 1.30 8.07 -2.39 -0.02 1.28 16 5 C 0.50 12.92 6.86 87.66 0.60 13.52 16 6 O -0.57 -20.31 14.89 10.93 0.16 -20.15 16 7 N -0.71 -16.41 5.03 -463.07 -2.33 -18.74 16 8 C 0.12 3.51 4.90 86.38 0.42 3.93 16 9 C 0.13 4.16 0.95 -9.40 -0.01 4.15 16 10 O -0.55 -17.48 13.19 -148.98 -1.96 -19.44 16 11 C -0.12 -4.70 6.16 31.78 0.20 -4.50 16 12 C 0.19 9.77 5.38 86.73 0.47 10.24 16 13 N -0.62 -32.12 3.39 -692.00 -2.35 -34.46 16 14 C -0.24 -13.60 10.26 84.03 0.86 -12.74 16 15 H 0.09 4.55 7.84 -2.91 -0.02 4.52 16 16 C -0.07 -3.94 5.48 84.86 0.47 -3.48 16 17 N -0.95 -58.71 10.36 21.65 0.22 -58.49 16 18 Si 0.98 46.26 29.56 68.60 2.03 48.28 16 19 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 20 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 21 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 22 C 0.11 4.46 5.93 86.86 0.51 4.97 16 23 N -0.61 -10.50 2.08 -797.84 -1.66 -12.16 16 24 C 0.10 0.71 7.31 86.89 0.64 1.35 16 25 C -0.12 -0.79 7.19 31.72 0.23 -0.56 16 26 C -0.15 -2.11 6.86 30.59 0.21 -1.90 16 27 C 0.51 12.36 6.68 87.90 0.59 12.95 16 28 O -0.58 -20.90 15.35 10.94 0.17 -20.73 16 29 H 0.05 0.63 7.75 -2.39 -0.02 0.61 16 30 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 32 H 0.09 1.35 7.43 -2.39 -0.02 1.33 16 33 H 0.05 1.20 6.62 -2.39 -0.02 1.19 16 34 H 0.41 7.06 6.66 -92.70 -0.62 6.44 16 35 H 0.06 2.02 8.11 -2.39 -0.02 2.00 16 36 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 37 H 0.38 8.38 8.16 -74.05 -0.60 7.77 16 38 H 0.09 3.12 8.01 -2.39 -0.02 3.10 16 39 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 40 H 0.01 0.41 7.55 -2.39 -0.02 0.39 16 41 H 0.01 0.61 7.36 -2.39 -0.02 0.60 16 42 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 43 H 0.06 2.03 7.97 -2.39 -0.02 2.01 16 44 H 0.03 1.03 8.04 -2.39 -0.02 1.01 16 45 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 46 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 47 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 48 H 0.12 0.01 8.14 -2.39 -0.02 -0.01 16 49 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 50 H 0.12 1.15 8.14 -2.38 -0.02 1.13 16 Total: -1.00 -89.23 396.18 0.18 -89.05 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -0.27 Total: 19.36 kcal Atomic # 6 Polarization: 21.31 SS G_CDS: 6.16 Total: 27.47 kcal Atomic # 7 Polarization: -117.74 SS G_CDS: -6.11 Total: -123.85 kcal Atomic # 8 Polarization: -58.68 SS G_CDS: -1.63 Total: -60.32 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.28 kcal Total: -89.23 0.18 -89.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569764721.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.068 kcal (2) G-P(sol) polarization free energy of solvation -89.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds