Wall clock time and date at job start Tue Mar 31 2020 23:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47118 * 2 1 4 4 H 1.08995 * 109.47438 * 54.99604 * 3 2 1 5 5 C 1.53006 * 109.46943 * 295.00033 * 3 2 1 6 6 C 1.50693 * 109.47138 * 175.00203 * 3 2 1 7 7 O 1.21281 * 120.00114 * 14.67659 * 6 3 2 8 8 N 1.34782 * 119.99962 * 194.67922 * 6 3 2 9 9 C 1.47125 * 121.05454 * 5.52242 * 8 6 3 10 10 C 1.53223 * 108.72793 * 127.76161 * 9 8 6 11 11 O 1.43111 * 109.34221 * 54.12565 * 10 9 8 12 12 C 1.42495 * 113.96730 * 300.02737 * 11 10 9 13 13 C 1.53464 * 113.74978 * 286.85513 * 12 11 10 14 14 N 1.48041 * 86.03396 * 221.86795 * 13 12 11 15 15 C 1.46902 * 110.99790 * 137.27309 * 14 13 12 16 16 C 1.50694 * 109.47338 * 70.55113 * 15 14 13 17 17 O 1.21290 * 120.00219 * 359.97438 * 16 15 14 18 18 N 1.34785 * 119.99727 * 180.02562 * 16 15 14 19 19 C 1.37099 * 119.99545 * 180.02562 * 18 16 15 20 20 H 1.07997 * 120.00276 * 359.97438 * 19 18 16 21 21 C 1.38953 * 119.99632 * 179.97438 * 19 18 16 22 22 N 1.31405 * 119.99996 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99907 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47054 * 59.99650 * 23 21 19 25 25 H 1.48498 * 109.47493 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47128 * 299.99933 * 23 21 19 27 27 C 1.48049 * 90.84153 * 24.34613 * 14 13 12 28 28 C 1.47343 * 121.05360 * 185.24357 * 8 6 3 29 29 H 1.09000 * 109.47090 * 300.00384 * 1 2 3 30 30 H 1.08999 * 109.46874 * 60.00405 * 1 2 3 31 31 H 1.09003 * 109.47108 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47090 * 239.99616 * 2 1 3 33 33 H 1.08999 * 109.46874 * 119.99595 * 2 1 3 34 34 H 1.08994 * 109.47302 * 65.74013 * 5 3 2 35 35 H 1.09001 * 109.47439 * 185.74336 * 5 3 2 36 36 H 1.09006 * 109.46929 * 305.73467 * 5 3 2 37 37 H 1.08991 * 109.59793 * 247.54252 * 9 8 6 38 38 H 1.09008 * 109.59324 * 7.99628 * 9 8 6 39 39 H 1.08999 * 109.49230 * 174.08126 * 10 9 8 40 40 H 1.08995 * 109.50026 * 294.13841 * 10 9 8 41 41 H 1.09004 * 113.77985 * 336.15170 * 13 12 11 42 42 H 1.08997 * 113.77546 * 107.58390 * 13 12 11 43 43 H 1.09001 * 109.47306 * 190.55788 * 15 14 13 44 44 H 1.09002 * 109.46925 * 310.55218 * 15 14 13 45 45 H 0.96994 * 120.00017 * 359.97438 * 18 16 15 46 46 H 0.97002 * 119.99985 * 179.97438 * 22 21 19 47 47 H 1.08996 * 113.78145 * 221.37017 * 27 14 13 48 48 H 1.09001 * 113.88580 * 89.94007 * 27 14 13 49 49 H 1.09005 * 109.74093 * 348.05757 * 28 8 6 50 50 H 1.08998 * 109.74383 * 108.77396 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 1.6352 2.1265 -1.3074 6 6 3.5418 1.4443 0.1238 7 8 4.1669 0.4217 -0.0620 8 7 4.1905 2.5823 0.4410 9 6 3.4510 3.8057 0.7889 10 6 3.9772 4.3349 2.1271 11 8 5.3968 4.4975 2.0473 12 6 6.1023 3.2928 1.7619 13 6 6.1586 2.3148 2.9432 14 7 7.5703 2.0910 2.5575 15 6 8.4393 2.0508 3.7412 16 6 8.1757 0.7850 4.5153 17 8 7.3452 -0.0057 4.1201 18 7 8.8621 0.5321 5.6473 19 6 8.6226 -0.6197 6.3513 20 1 7.8837 -1.3242 5.9990 21 6 9.3307 -0.8807 7.5180 22 7 10.2301 -0.0238 7.9464 23 14 9.0039 -2.4498 8.4776 24 1 9.2871 -3.6253 7.6154 25 1 9.8829 -2.4907 9.6738 26 1 7.5824 -2.4811 8.9060 27 6 7.6250 3.4182 1.9039 28 6 5.6628 2.6391 0.4563 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.5498 2.2165 -1.3495 35 1 2.0841 3.1188 -1.3525 36 1 1.9836 1.5315 -2.1517 37 1 3.6019 4.5570 0.0139 38 1 2.3888 3.5778 0.8783 39 1 3.5128 5.2964 2.3460 40 1 3.7359 3.6258 2.9190 41 1 6.0390 2.7927 3.9155 42 1 5.5242 1.4374 2.8179 43 1 9.4828 2.0739 3.4268 44 1 8.2314 2.9136 4.3740 45 1 9.5260 1.1646 5.9635 46 1 10.7241 -0.2059 8.7611 47 1 8.1566 3.4180 0.9524 48 1 7.9396 4.2241 2.5669 49 1 6.0708 1.6301 0.3951 50 1 6.0172 3.2320 -0.3868 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570222526.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:31 Heat of formation + Delta-G solvation = -74.167166 kcal Electronic energy + Delta-G solvation = -30847.472415 eV Core-core repulsion = 26683.179594 eV Total energy + Delta-G solvation = -4164.292821 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.23646 -39.79686 -38.18862 -37.05769 -35.67516 -34.93395 -33.88095 -31.63337 -31.12099 -30.09571 -29.00376 -27.17645 -26.19017 -25.45317 -24.93411 -23.85283 -22.64149 -21.45352 -19.34692 -19.25411 -18.85548 -17.89109 -17.52892 -16.97094 -16.21224 -16.12575 -15.95167 -15.34742 -15.08160 -14.94230 -14.73607 -14.51323 -14.30092 -14.03062 -13.75814 -13.66457 -13.44472 -13.18289 -13.03849 -12.79836 -12.48801 -12.39619 -12.23233 -12.00511 -11.89047 -11.82097 -11.68441 -11.44413 -11.29998 -11.08056 -11.04225 -10.95049 -10.89062 -10.59370 -10.42154 -10.19229 -10.01533 -9.72064 -9.47001 -8.73634 -8.68697 -8.22146 -7.93957 -6.39452 -3.80110 2.51794 2.66935 3.21904 3.27099 3.31565 3.38411 3.91546 4.02801 4.17418 4.22633 4.37907 4.44446 4.46525 4.59629 4.64120 4.80592 4.87916 4.91973 4.98198 5.08368 5.12214 5.20592 5.25951 5.26736 5.37566 5.38564 5.46645 5.50228 5.55726 5.57887 5.60151 5.67884 5.72599 5.76277 5.79350 5.86325 5.93174 5.98427 6.11088 6.17953 6.22533 6.27855 6.56342 7.00227 7.12968 7.19247 7.57285 8.05957 8.07800 8.63987 9.20313 9.56327 10.08538 10.78354 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013078 B = 0.002753 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.525936 B =10167.118333 C =11609.322411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.108 4.108 3 C -0.110 4.110 4 H 0.093 0.907 5 C -0.143 4.143 6 C 0.519 3.481 7 O -0.524 6.524 8 N -0.617 5.617 9 C 0.072 3.928 10 C 0.045 3.955 11 O -0.365 6.365 12 C 0.067 3.933 13 C 0.008 3.992 14 N -0.446 5.446 15 C 0.012 3.988 16 C 0.443 3.557 17 O -0.576 6.576 18 N -0.565 5.565 19 C -0.298 4.298 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.903 5.903 23 Si 0.930 3.070 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.274 1.274 27 C 0.020 3.980 28 C 0.115 3.885 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.106 0.894 40 H 0.059 0.941 41 H 0.073 0.927 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.056 0.944 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.099 0.901 48 H 0.082 0.918 49 H 0.117 0.883 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.016 13.019 -15.776 25.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.146 4.146 3 C -0.131 4.131 4 H 0.111 0.889 5 C -0.200 4.200 6 C 0.307 3.693 7 O -0.399 6.399 8 N -0.352 5.352 9 C -0.051 4.051 10 C -0.032 4.032 11 O -0.283 6.283 12 C 0.026 3.974 13 C -0.121 4.121 14 N -0.169 5.169 15 C -0.120 4.120 16 C 0.228 3.772 17 O -0.460 6.460 18 N -0.202 5.202 19 C -0.428 4.428 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.109 4.109 28 C -0.008 4.008 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.113 0.887 39 H 0.124 0.876 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.114 0.886 43 H 0.112 0.888 44 H 0.074 0.926 45 H 0.225 0.775 46 H 0.082 0.918 47 H 0.117 0.883 48 H 0.100 0.900 49 H 0.136 0.864 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.828 11.476 -16.301 25.455 hybrid contribution 0.137 0.307 1.454 1.492 sum -15.690 11.783 -14.847 24.606 Atomic orbital electron populations 1.21827 0.95415 1.02011 1.01694 1.21382 0.95384 0.94000 1.03823 1.21365 0.91756 0.99586 1.00420 0.88916 1.21810 1.02067 1.00339 0.95832 1.20724 0.90123 0.82419 0.76046 1.90755 1.68798 1.31247 1.49076 1.48162 1.06766 1.10887 1.69387 1.22454 0.97307 0.87303 0.98030 1.22947 0.82124 1.02235 0.95924 1.87951 1.17646 1.31311 1.91353 1.23481 0.93107 0.85559 0.95294 1.24288 0.92498 0.98774 0.96538 1.68433 1.02839 1.25425 1.20235 1.22456 0.99277 0.97862 0.92360 1.19666 0.85742 0.88470 0.83284 1.90546 1.36651 1.49267 1.69501 1.41851 1.35988 1.21174 1.21150 1.19650 1.20944 0.98094 1.04116 0.88020 1.25249 0.96018 0.99205 0.97448 1.69603 1.24612 1.36231 1.23987 0.85923 0.78275 0.81439 0.78619 1.19859 1.20969 1.19944 1.24081 0.92270 0.92938 1.01595 1.21811 0.79410 1.04063 0.95472 0.92742 0.92534 0.92373 0.90948 0.91150 0.91160 0.92193 0.91869 0.90417 0.88653 0.87625 0.92311 0.90918 0.88628 0.88837 0.92612 0.77504 0.91847 0.88303 0.89969 0.86441 0.90801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.67 37.16 0.36 -0.72 16 2 C -0.11 -1.05 4.72 -26.73 -0.13 -1.18 16 3 C -0.11 -0.98 1.88 -91.77 -0.17 -1.15 16 4 H 0.09 0.66 6.62 -51.93 -0.34 0.32 16 5 C -0.14 -0.95 8.58 37.16 0.32 -0.63 16 6 C 0.52 6.73 6.91 -10.99 -0.08 6.65 16 7 O -0.52 -9.26 15.58 5.56 0.09 -9.18 16 8 N -0.62 -7.06 3.03 -172.68 -0.52 -7.59 16 9 C 0.07 0.56 5.50 -3.59 -0.02 0.54 16 10 C 0.05 0.40 6.89 37.27 0.26 0.66 16 11 O -0.36 -4.37 10.52 -35.23 -0.37 -4.74 16 12 C 0.07 0.88 1.27 -90.48 -0.12 0.77 16 13 C 0.01 0.13 5.57 -2.96 -0.02 0.12 16 14 N -0.45 -7.78 5.80 -242.13 -1.40 -9.18 16 15 C 0.01 0.23 5.31 -4.98 -0.03 0.20 16 16 C 0.44 10.87 7.59 -10.98 -0.08 10.79 16 17 O -0.58 -16.30 15.13 5.55 0.08 -16.21 16 18 N -0.56 -14.72 5.29 -10.96 -0.06 -14.78 16 19 C -0.30 -8.54 9.68 -14.93 -0.14 -8.68 16 20 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.97 13.05 55.50 0.72 -24.25 16 23 Si 0.93 21.52 29.55 -169.99 -5.02 16.50 16 24 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 27 C 0.02 0.27 7.37 -2.97 -0.02 0.25 16 28 C 0.11 1.49 5.67 -3.85 -0.02 1.47 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.33 6.70 -51.93 -0.35 -0.02 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.78 8.09 -51.93 -0.42 0.36 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.35 6.85 -51.93 -0.36 -0.01 16 35 H 0.06 0.35 7.04 -51.93 -0.37 -0.01 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.10 0.52 5.44 -51.92 -0.28 0.24 16 39 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.59 7.80 -51.93 -0.40 0.18 16 41 H 0.07 1.25 7.78 -51.93 -0.40 0.85 16 42 H 0.10 1.90 8.04 -51.93 -0.42 1.49 16 43 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 44 H 0.06 0.93 7.70 -51.93 -0.40 0.53 16 45 H 0.39 9.73 7.90 -40.82 -0.32 9.40 16 46 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 47 H 0.10 1.11 8.09 -51.93 -0.42 0.69 16 48 H 0.08 1.00 7.80 -51.93 -0.41 0.59 16 49 H 0.12 1.91 6.93 -51.93 -0.36 1.55 16 50 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 394.74 15.07 5.95 5.95 Total: -1.00 -35.17 394.74 -8.66 -43.83 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -8.14 Total: 10.06 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: 0.01 Total: 9.59 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: -1.26 Total: -55.80 kcal Atomic # 8 Polarization: -29.93 SS G_CDS: -0.20 Total: -30.13 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.17 -8.66 -43.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570222526.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.337 kcal (2) G-P(sol) polarization free energy of solvation -35.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds