Wall clock time and date at job start Tue Mar 31 2020 23:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47118 * 2 1 4 4 H 1.08995 * 109.47438 * 54.99604 * 3 2 1 5 5 C 1.53006 * 109.46943 * 295.00033 * 3 2 1 6 6 C 1.50693 * 109.47138 * 175.00203 * 3 2 1 7 7 O 1.21281 * 120.00114 * 14.67659 * 6 3 2 8 8 N 1.34782 * 119.99962 * 194.67922 * 6 3 2 9 9 C 1.47125 * 121.05454 * 5.52242 * 8 6 3 10 10 C 1.53223 * 108.72793 * 127.76161 * 9 8 6 11 11 O 1.43111 * 109.34221 * 54.12565 * 10 9 8 12 12 C 1.42495 * 113.96730 * 300.02737 * 11 10 9 13 13 C 1.53464 * 113.74978 * 286.85513 * 12 11 10 14 14 N 1.48041 * 86.03396 * 221.86795 * 13 12 11 15 15 C 1.46902 * 110.99790 * 137.27309 * 14 13 12 16 16 C 1.50694 * 109.47338 * 70.55113 * 15 14 13 17 17 O 1.21290 * 120.00219 * 359.97438 * 16 15 14 18 18 N 1.34785 * 119.99727 * 180.02562 * 16 15 14 19 19 C 1.37099 * 119.99545 * 180.02562 * 18 16 15 20 20 H 1.07997 * 120.00276 * 359.97438 * 19 18 16 21 21 C 1.38953 * 119.99632 * 179.97438 * 19 18 16 22 22 N 1.31405 * 119.99996 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99907 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47054 * 59.99650 * 23 21 19 25 25 H 1.48498 * 109.47493 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47128 * 299.99933 * 23 21 19 27 27 C 1.48049 * 90.84153 * 24.34613 * 14 13 12 28 28 C 1.47343 * 121.05360 * 185.24357 * 8 6 3 29 29 H 1.09000 * 109.47090 * 300.00384 * 1 2 3 30 30 H 1.08999 * 109.46874 * 60.00405 * 1 2 3 31 31 H 1.09003 * 109.47108 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47090 * 239.99616 * 2 1 3 33 33 H 1.08999 * 109.46874 * 119.99595 * 2 1 3 34 34 H 1.08994 * 109.47302 * 65.74013 * 5 3 2 35 35 H 1.09001 * 109.47439 * 185.74336 * 5 3 2 36 36 H 1.09006 * 109.46929 * 305.73467 * 5 3 2 37 37 H 1.08991 * 109.59793 * 247.54252 * 9 8 6 38 38 H 1.09008 * 109.59324 * 7.99628 * 9 8 6 39 39 H 1.08999 * 109.49230 * 174.08126 * 10 9 8 40 40 H 1.08995 * 109.50026 * 294.13841 * 10 9 8 41 41 H 1.09004 * 113.77985 * 336.15170 * 13 12 11 42 42 H 1.08997 * 113.77546 * 107.58390 * 13 12 11 43 43 H 1.09001 * 109.47306 * 190.55788 * 15 14 13 44 44 H 1.09002 * 109.46925 * 310.55218 * 15 14 13 45 45 H 0.96994 * 120.00017 * 359.97438 * 18 16 15 46 46 H 0.97002 * 119.99985 * 179.97438 * 22 21 19 47 47 H 1.08996 * 113.78145 * 221.37017 * 27 14 13 48 48 H 1.09001 * 113.88580 * 89.94007 * 27 14 13 49 49 H 1.09005 * 109.74093 * 348.05757 * 28 8 6 50 50 H 1.08998 * 109.74383 * 108.77396 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 1.6352 2.1265 -1.3074 6 6 3.5418 1.4443 0.1238 7 8 4.1669 0.4217 -0.0620 8 7 4.1905 2.5823 0.4410 9 6 3.4510 3.8057 0.7889 10 6 3.9772 4.3349 2.1271 11 8 5.3968 4.4975 2.0473 12 6 6.1023 3.2928 1.7619 13 6 6.1586 2.3148 2.9432 14 7 7.5703 2.0910 2.5575 15 6 8.4393 2.0508 3.7412 16 6 8.1757 0.7850 4.5153 17 8 7.3452 -0.0057 4.1201 18 7 8.8621 0.5321 5.6473 19 6 8.6226 -0.6197 6.3513 20 1 7.8837 -1.3242 5.9990 21 6 9.3307 -0.8807 7.5180 22 7 10.2301 -0.0238 7.9464 23 14 9.0039 -2.4498 8.4776 24 1 9.2871 -3.6253 7.6154 25 1 9.8829 -2.4907 9.6738 26 1 7.5824 -2.4811 8.9060 27 6 7.6250 3.4182 1.9039 28 6 5.6628 2.6391 0.4563 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.5498 2.2165 -1.3495 35 1 2.0841 3.1188 -1.3525 36 1 1.9836 1.5315 -2.1517 37 1 3.6019 4.5570 0.0139 38 1 2.3888 3.5778 0.8783 39 1 3.5128 5.2964 2.3460 40 1 3.7359 3.6258 2.9190 41 1 6.0390 2.7927 3.9155 42 1 5.5242 1.4374 2.8179 43 1 9.4828 2.0739 3.4268 44 1 8.2314 2.9136 4.3740 45 1 9.5260 1.1646 5.9635 46 1 10.7241 -0.2059 8.7611 47 1 8.1566 3.4180 0.9524 48 1 7.9396 4.2241 2.5669 49 1 6.0708 1.6301 0.3951 50 1 6.0172 3.2320 -0.3868 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570222526.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:30 Heat of formation + Delta-G solvation = -102.704160 kcal Electronic energy + Delta-G solvation = -30848.709872 eV Core-core repulsion = 26683.179594 eV Total energy + Delta-G solvation = -4165.530278 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.31906 -40.93100 -39.88835 -38.31536 -36.48645 -36.00076 -35.88399 -33.39740 -32.61243 -30.78885 -30.13380 -28.28770 -27.40994 -26.94625 -25.93452 -25.01933 -23.75923 -22.31930 -21.15462 -20.28214 -20.00572 -19.77758 -18.42355 -18.10994 -17.89960 -17.16730 -17.03759 -16.64772 -16.45090 -16.18115 -15.90283 -15.70757 -15.66168 -15.28596 -15.11851 -14.68904 -14.50572 -14.41763 -14.27150 -13.76619 -13.58554 -13.50948 -13.47398 -13.11263 -13.05296 -12.98752 -12.84981 -12.60985 -12.52537 -12.48822 -12.18136 -12.14856 -12.09245 -11.75481 -11.71470 -11.60897 -11.55004 -11.07908 -10.70476 -10.42123 -10.07178 -9.87438 -9.63491 -8.51119 -6.00327 1.35524 1.37396 1.48664 1.54046 1.79001 1.99012 2.23478 2.41270 2.81238 3.14479 3.18335 3.26437 3.38833 3.53715 3.76312 3.87428 3.90063 3.95358 4.05905 4.16215 4.23645 4.26866 4.32162 4.36283 4.45902 4.47256 4.52794 4.55026 4.55884 4.65150 4.67547 4.71531 4.79975 4.83819 4.87535 4.94242 4.98454 5.10585 5.18389 5.22273 5.30212 5.34125 5.35746 5.46506 5.76239 5.98549 6.05688 6.29308 6.55196 7.07658 7.09342 7.49745 8.06616 8.66148 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013078 B = 0.002753 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.525936 B =10167.118333 C =11609.322411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.110 4.110 3 C -0.103 4.103 4 H 0.118 0.882 5 C -0.137 4.137 6 C 0.508 3.492 7 O -0.587 6.587 8 N -0.617 5.617 9 C 0.070 3.930 10 C 0.037 3.963 11 O -0.366 6.366 12 C 0.089 3.911 13 C 0.005 3.995 14 N -0.475 5.475 15 C 0.026 3.974 16 C 0.437 3.563 17 O -0.622 6.622 18 N -0.571 5.571 19 C -0.337 4.337 20 H 0.074 0.926 21 C -0.010 4.010 22 N -0.918 5.918 23 Si 0.992 3.008 24 H -0.274 1.274 25 H -0.266 1.266 26 H -0.272 1.272 27 C 0.030 3.970 28 C 0.115 3.885 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.037 0.963 34 H 0.097 0.903 35 H 0.074 0.926 36 H 0.048 0.952 37 H 0.104 0.896 38 H 0.124 0.876 39 H 0.144 0.856 40 H 0.041 0.959 41 H 0.066 0.934 42 H 0.050 0.950 43 H 0.117 0.883 44 H 0.080 0.920 45 H 0.397 0.603 46 H 0.279 0.721 47 H 0.123 0.877 48 H 0.101 0.899 49 H 0.076 0.924 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.202 16.088 -16.262 28.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.148 4.148 3 C -0.124 4.124 4 H 0.136 0.864 5 C -0.194 4.194 6 C 0.298 3.702 7 O -0.467 6.467 8 N -0.350 5.350 9 C -0.051 4.051 10 C -0.040 4.040 11 O -0.284 6.284 12 C 0.047 3.953 13 C -0.124 4.124 14 N -0.199 5.199 15 C -0.106 4.106 16 C 0.225 3.775 17 O -0.508 6.508 18 N -0.209 5.209 19 C -0.466 4.466 20 H 0.092 0.908 21 C -0.210 4.210 22 N -0.559 5.559 23 Si 0.816 3.184 24 H -0.199 1.199 25 H -0.190 1.190 26 H -0.197 1.197 27 C -0.098 4.098 28 C -0.008 4.008 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.115 0.885 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.122 0.878 38 H 0.142 0.858 39 H 0.162 0.838 40 H 0.059 0.941 41 H 0.084 0.916 42 H 0.069 0.931 43 H 0.135 0.865 44 H 0.098 0.902 45 H 0.231 0.769 46 H 0.089 0.911 47 H 0.141 0.859 48 H 0.119 0.881 49 H 0.094 0.906 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -17.012 14.622 -16.777 28.012 hybrid contribution 0.488 -0.622 1.613 1.797 sum -16.524 14.000 -15.164 26.438 Atomic orbital electron populations 1.21786 0.92741 1.02453 1.03195 1.21365 0.97599 0.94437 1.01384 1.21431 0.88512 0.99473 1.02949 0.86391 1.21819 1.03813 1.00333 0.93436 1.21599 0.91859 0.81846 0.74893 1.90724 1.70329 1.33588 1.52019 1.48322 1.06394 1.11905 1.68390 1.22783 0.98312 0.85992 0.98016 1.23274 0.80634 1.03978 0.96129 1.87943 1.19387 1.29846 1.91249 1.23117 0.93768 0.85061 0.93318 1.24142 0.92046 0.98159 0.98087 1.68391 1.02645 1.28995 1.19883 1.22352 1.00813 0.94867 0.92524 1.20762 0.84179 0.89850 0.82728 1.90520 1.38370 1.51426 1.70478 1.41906 1.36483 1.20804 1.21698 1.19589 1.21953 0.99269 1.05824 0.90783 1.26028 0.95283 1.02173 0.97544 1.69656 1.24537 1.37334 1.24340 0.85008 0.78433 0.77421 0.77577 1.19899 1.18988 1.19721 1.24177 0.92315 0.90886 1.02424 1.21677 0.80744 1.02118 0.96272 0.91579 0.90515 0.92618 0.92830 0.94380 0.88462 0.90669 0.93298 0.87760 0.85827 0.83819 0.94089 0.91627 0.93143 0.86505 0.90221 0.76879 0.91131 0.85926 0.88088 0.90572 0.88188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.67 71.98 0.70 -1.16 16 2 C -0.11 -2.23 4.72 30.59 0.14 -2.09 16 3 C -0.10 -1.74 1.88 -11.54 -0.02 -1.76 16 4 H 0.12 1.39 6.62 -2.39 -0.02 1.37 16 5 C -0.14 -1.45 8.58 71.98 0.62 -0.83 16 6 C 0.51 13.65 6.91 87.65 0.61 14.26 16 7 O -0.59 -22.77 15.58 -3.03 -0.05 -22.81 16 8 N -0.62 -13.78 3.03 -818.62 -2.48 -16.26 16 9 C 0.07 0.86 5.50 86.33 0.47 1.34 16 10 C 0.04 0.55 6.89 72.06 0.50 1.05 16 11 O -0.37 -7.86 10.52 -148.98 -1.57 -9.42 16 12 C 0.09 2.29 1.27 -10.64 -0.01 2.28 16 13 C 0.01 0.18 5.57 86.23 0.48 0.66 16 14 N -0.48 -16.83 5.80 -924.14 -5.36 -22.19 16 15 C 0.03 0.96 5.31 85.55 0.45 1.41 16 16 C 0.44 22.32 7.59 87.65 0.67 22.99 16 17 O -0.62 -37.43 15.13 -3.06 -0.05 -37.48 16 18 N -0.57 -30.78 5.29 -306.98 -1.62 -32.40 16 19 C -0.34 -20.00 9.68 84.04 0.81 -19.18 16 20 H 0.07 4.73 7.16 -2.91 -0.02 4.70 16 21 C -0.01 -0.56 5.50 84.93 0.47 -0.10 16 22 N -0.92 -50.60 13.05 21.66 0.28 -50.31 16 23 Si 0.99 44.36 29.55 68.60 2.03 46.38 16 24 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 25 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 26 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 27 C 0.03 0.74 7.37 86.23 0.64 1.37 16 28 C 0.12 2.98 5.67 86.05 0.49 3.47 16 29 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.08 0.69 6.70 -2.39 -0.02 0.67 16 31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.05 1.26 8.09 -2.39 -0.02 1.24 16 33 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.10 0.55 6.85 -2.39 -0.02 0.53 16 35 H 0.07 0.59 7.04 -2.39 -0.02 0.57 16 36 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 37 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.12 0.82 5.44 -2.38 -0.01 0.81 16 39 H 0.14 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.04 0.78 7.80 -2.39 -0.02 0.76 16 41 H 0.07 2.35 7.78 -2.39 -0.02 2.33 16 42 H 0.05 2.21 8.04 -2.39 -0.02 2.19 16 43 H 0.12 3.77 8.14 -2.39 -0.02 3.75 16 44 H 0.08 2.56 7.70 -2.39 -0.02 2.54 16 45 H 0.40 20.09 7.90 -92.71 -0.73 19.35 16 46 H 0.28 14.36 8.31 -92.71 -0.77 13.59 16 47 H 0.12 2.42 8.09 -2.39 -0.02 2.40 16 48 H 0.10 2.12 7.80 -2.39 -0.02 2.10 16 49 H 0.08 2.66 6.93 -2.38 -0.02 2.65 16 50 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -83.75 394.74 -1.60 -85.34 By element: Atomic # 1 Polarization: 35.24 SS G_CDS: 0.22 Total: 35.45 kcal Atomic # 6 Polarization: 16.70 SS G_CDS: 7.00 Total: 23.70 kcal Atomic # 7 Polarization: -111.98 SS G_CDS: -9.18 Total: -121.17 kcal Atomic # 8 Polarization: -68.06 SS G_CDS: -1.66 Total: -69.72 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -83.75 -1.60 -85.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570222526.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.363 kcal (2) G-P(sol) polarization free energy of solvation -83.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds