Wall clock time and date at job start Tue Mar 31 2020 23:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.50699 * 119.99662 * 2 1 4 4 C 1.32986 * 120.00362 * 180.02562 * 2 1 3 5 5 C 1.47110 * 119.99923 * 14.79628 * 4 2 1 6 6 O 1.21613 * 119.99792 * 6.66837 * 5 4 2 7 7 N 1.34772 * 120.00024 * 186.66508 * 5 4 2 8 8 C 1.46925 * 120.63085 * 354.85125 * 7 5 4 9 9 C 1.53190 * 108.77371 * 233.58739 * 8 7 5 10 10 C 1.53036 * 109.31520 * 305.36089 * 9 8 7 11 11 C 1.53043 * 109.53446 * 61.36576 * 10 9 8 12 12 C 1.53009 * 109.52465 * 178.66794 * 11 10 9 13 13 O 1.42897 * 109.47057 * 186.26378 * 12 11 10 14 14 N 1.46904 * 109.49690 * 58.59053 * 11 10 9 15 15 C 1.46904 * 111.00131 * 64.17829 * 14 11 10 16 16 C 1.50695 * 109.46852 * 175.28534 * 15 14 11 17 17 O 1.21293 * 120.00251 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99933 * 179.97438 * 16 15 14 19 19 C 1.37096 * 120.00510 * 179.97438 * 18 16 15 20 20 H 1.08003 * 119.99462 * 0.02562 * 19 18 16 21 21 C 1.38953 * 120.00475 * 179.72811 * 19 18 16 22 22 N 1.31410 * 119.99576 * 0.27047 * 21 19 18 23 23 Si 1.86795 * 120.00074 * 180.27484 * 21 19 18 24 24 H 1.48506 * 109.46817 * 59.99952 * 23 21 19 25 25 H 1.48496 * 109.46978 * 179.97438 * 23 21 19 26 26 H 1.48491 * 109.47394 * 299.99813 * 23 21 19 27 27 C 1.46925 * 120.63056 * 174.83093 * 7 5 4 28 28 H 1.09005 * 109.46808 * 185.82864 * 1 2 3 29 29 H 1.09005 * 109.46875 * 305.82369 * 1 2 3 30 30 H 1.08997 * 109.47428 * 65.82387 * 1 2 3 31 31 H 1.09003 * 109.47109 * 270.00269 * 3 2 1 32 32 H 1.09003 * 109.47292 * 30.00260 * 3 2 1 33 33 H 1.08994 * 109.47444 * 150.00223 * 3 2 1 34 34 H 1.07997 * 120.00495 * 194.79757 * 4 2 1 35 35 H 1.09004 * 109.59018 * 353.36912 * 8 7 5 36 36 H 1.08993 * 109.58859 * 113.79873 * 8 7 5 37 37 H 1.09000 * 109.50514 * 65.31621 * 9 8 7 38 38 H 1.09008 * 109.50041 * 185.38104 * 9 8 7 39 39 H 1.09003 * 109.46587 * 301.34927 * 10 9 8 40 40 H 1.08999 * 109.46378 * 181.38751 * 10 9 8 41 41 H 1.09005 * 109.46927 * 306.26277 * 12 11 10 42 42 H 1.09001 * 109.46986 * 66.26318 * 12 11 10 43 43 H 0.96699 * 114.00017 * 179.97438 * 13 12 11 44 44 H 1.00903 * 110.99857 * 300.22512 * 14 11 10 45 45 H 1.09002 * 109.46891 * 55.28519 * 15 14 11 46 46 H 1.08995 * 109.46976 * 295.28711 * 15 14 11 47 47 H 0.97007 * 119.99674 * 0.02562 * 18 16 15 48 48 H 0.96996 * 119.99730 * 179.97438 * 22 21 19 49 49 H 1.08998 * 109.58443 * 6.62199 * 27 7 5 50 50 H 1.09000 * 109.70222 * 246.27036 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1517 -0.0005 5 6 1.4731 -2.4044 -0.3264 6 8 0.3204 -2.3748 -0.7127 7 7 2.1104 -3.5849 -0.1970 8 6 3.5349 -3.6315 0.1596 9 6 4.2760 -4.4780 -0.8801 10 6 3.6088 -5.8514 -0.9833 11 6 2.1587 -5.6826 -1.4426 12 6 1.5017 -7.0579 -1.5776 13 8 0.1983 -6.9095 -2.1443 14 7 2.1324 -4.9971 -2.7416 15 6 2.7754 -5.8128 -3.7805 16 6 2.6275 -5.1321 -5.1167 17 8 2.0443 -4.0715 -5.1958 18 7 3.1441 -5.7012 -6.2238 19 6 3.0092 -5.0823 -7.4396 20 1 2.4891 -4.1383 -7.5102 21 6 3.5467 -5.6663 -8.5802 22 7 4.1799 -6.8145 -8.4941 23 14 3.3694 -4.8190 -10.2355 24 1 4.0141 -3.4824 -10.1789 25 1 4.0252 -5.6403 -11.2846 26 1 1.9288 -4.6605 -10.5587 27 6 1.3936 -4.8497 -0.4093 28 1 -0.3633 -1.0224 0.1044 29 1 -0.3633 0.6015 0.8333 30 1 -0.3634 0.4209 -0.9375 31 1 2.4421 1.6198 -1.0277 32 1 1.6714 2.0648 0.5139 33 1 3.2129 1.1749 0.5138 34 1 3.2251 -1.1673 0.2383 35 1 3.9433 -2.6208 0.1660 36 1 3.6503 -4.0807 1.1459 37 1 4.2366 -3.9807 -1.8493 38 1 5.3156 -4.6001 -0.5759 39 1 3.6265 -6.3380 -0.0081 40 1 4.1491 -6.4644 -1.7046 41 1 2.1100 -7.6891 -2.2255 42 1 1.4197 -7.5195 -0.5936 43 1 -0.2777 -7.7433 -2.2595 44 1 2.5629 -4.0866 -2.6787 45 1 2.3010 -6.7935 -3.8177 46 1 3.8337 -5.9297 -3.5474 47 1 3.6108 -6.5493 -6.1605 48 1 4.5548 -7.2224 -9.2903 49 1 0.3890 -4.6429 -0.7781 50 1 1.3321 -5.3994 0.5299 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570276800.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:37 Heat of formation + Delta-G solvation = -112.326464 kcal Electronic energy + Delta-G solvation = -31145.359142 eV Core-core repulsion = 26979.411610 eV Total energy + Delta-G solvation = -4165.947532 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.68545 -40.32636 -39.49428 -37.36871 -36.29695 -36.09066 -35.54163 -33.31341 -32.91619 -32.00168 -29.25743 -28.62443 -28.10969 -26.87788 -26.36147 -25.61999 -23.14084 -21.79232 -21.05898 -19.99550 -19.77403 -18.96684 -18.41265 -18.13588 -18.05548 -17.14655 -16.63887 -16.50106 -16.19224 -15.98470 -15.74717 -15.37338 -15.33922 -15.04855 -14.80973 -14.70553 -14.53055 -14.51629 -14.04459 -13.84680 -13.67686 -13.54600 -13.35380 -13.21204 -13.16418 -12.89741 -12.84748 -12.60813 -12.47561 -12.45214 -12.13414 -12.08251 -11.93674 -11.78077 -11.52706 -11.45640 -10.80049 -10.39664 -10.36566 -10.02950 -9.96846 -9.53989 -9.09316 -8.48175 -5.96921 0.38814 1.37705 1.39013 1.50324 2.04446 2.07777 2.27764 2.34336 2.85099 3.18220 3.32842 3.51930 3.65441 3.78657 3.84964 3.94991 4.00148 4.09191 4.24241 4.26817 4.32560 4.39426 4.46990 4.54991 4.56820 4.58018 4.64085 4.67164 4.68248 4.69318 4.79279 4.85421 4.88246 4.90609 4.98095 5.08086 5.21065 5.24625 5.26315 5.38498 5.52350 5.68417 5.70650 5.91853 6.19314 6.39590 6.53199 6.59991 7.05066 7.11636 7.30953 7.54618 8.12187 8.69216 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010771 B = 0.003187 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2598.878259 B = 8784.605100 C =10170.063540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.028 4.028 3 C -0.123 4.123 4 C -0.253 4.253 5 C 0.536 3.464 6 O -0.577 6.577 7 N -0.609 5.609 8 C 0.103 3.897 9 C -0.137 4.137 10 C -0.146 4.146 11 C 0.100 3.900 12 C 0.084 3.916 13 O -0.580 6.580 14 N -0.659 5.659 15 C 0.070 3.930 16 C 0.437 3.563 17 O -0.626 6.626 18 N -0.572 5.572 19 C -0.336 4.336 20 H 0.073 0.927 21 C -0.010 4.010 22 N -0.919 5.919 23 Si 0.992 3.008 24 H -0.272 1.272 25 H -0.266 1.266 26 H -0.275 1.275 27 C 0.133 3.867 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.158 0.842 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.037 0.963 38 H 0.109 0.891 39 H 0.104 0.896 40 H 0.071 0.929 41 H 0.054 0.946 42 H 0.081 0.919 43 H 0.388 0.612 44 H 0.334 0.666 45 H 0.100 0.900 46 H 0.065 0.935 47 H 0.396 0.604 48 H 0.279 0.721 49 H 0.063 0.937 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.852 2.468 24.700 25.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.030 4.030 3 C -0.179 4.179 4 C -0.273 4.273 5 C 0.329 3.671 6 O -0.460 6.460 7 N -0.340 5.340 8 C -0.018 4.018 9 C -0.176 4.176 10 C -0.185 4.185 11 C 0.008 3.992 12 C 0.006 3.994 13 O -0.386 6.386 14 N -0.292 5.292 15 C -0.062 4.062 16 C 0.225 3.775 17 O -0.512 6.512 18 N -0.210 5.210 19 C -0.466 4.466 20 H 0.091 0.909 21 C -0.210 4.210 22 N -0.560 5.560 23 Si 0.815 3.185 24 H -0.197 1.197 25 H -0.190 1.190 26 H -0.200 1.200 27 C 0.010 3.990 28 H 0.105 0.895 29 H 0.102 0.898 30 H 0.079 0.921 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.108 0.892 34 H 0.175 0.825 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.055 0.945 38 H 0.128 0.872 39 H 0.122 0.878 40 H 0.090 0.910 41 H 0.072 0.928 42 H 0.099 0.901 43 H 0.236 0.764 44 H 0.154 0.846 45 H 0.118 0.882 46 H 0.083 0.917 47 H 0.230 0.770 48 H 0.088 0.912 49 H 0.082 0.918 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.515 3.461 24.161 24.536 hybrid contribution 0.677 -0.653 -1.157 1.491 sum 3.192 2.808 23.004 23.393 Atomic orbital electron populations 1.21613 0.92549 1.05775 1.01902 1.22870 0.96456 0.95846 0.87846 1.21052 1.00560 0.92829 1.03506 1.22572 1.01895 0.91137 1.11686 1.19161 0.85799 0.85197 0.76930 1.90631 1.20018 1.86950 1.48418 1.48094 1.11930 1.05252 1.68770 1.22092 0.78194 1.02609 0.98910 1.21950 1.01288 0.95452 0.98873 1.22205 0.94171 0.98200 1.03904 1.21545 0.95250 0.93744 0.88614 1.22326 0.84315 0.94427 0.98343 1.86697 1.29503 1.36545 1.85902 1.59991 1.60187 1.04810 1.04177 1.21506 0.98318 0.97605 0.88744 1.20984 0.82641 0.86944 0.86952 1.90507 1.47524 1.25954 1.87232 1.41884 1.50511 1.22464 1.06114 1.19600 1.35538 1.06135 0.85329 0.90870 1.26005 0.95672 0.96658 1.02666 1.69656 1.36866 1.17535 1.31951 0.85013 0.78560 0.78132 0.76764 1.19689 1.19014 1.20002 1.21482 0.96170 0.83737 0.97584 0.89501 0.89815 0.92086 0.90035 0.89871 0.89230 0.82490 0.88014 0.88173 0.94450 0.87235 0.87794 0.90995 0.92817 0.90095 0.76376 0.84564 0.88174 0.91700 0.77003 0.91203 0.91818 0.88580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.05 9.39 71.24 0.67 -3.38 16 2 C -0.03 -0.61 6.08 -17.62 -0.11 -0.72 16 3 C -0.12 -1.70 10.05 71.24 0.72 -0.99 16 4 C -0.25 -5.72 8.93 23.43 0.21 -5.51 16 5 C 0.54 16.23 7.46 86.57 0.65 16.88 16 6 O -0.58 -22.93 12.63 -4.07 -0.05 -22.98 16 7 N -0.61 -14.83 2.48 -823.20 -2.04 -16.87 16 8 C 0.10 1.55 6.32 86.36 0.55 2.09 16 9 C -0.14 -2.28 5.76 30.67 0.18 -2.10 16 10 C -0.15 -2.47 4.41 30.62 0.13 -2.34 16 11 C 0.10 2.50 0.47 3.61 0.00 2.50 16 12 C 0.08 1.82 5.21 71.99 0.38 2.20 16 13 O -0.58 -16.32 13.10 -148.98 -1.95 -18.27 16 14 N -0.66 -23.97 5.29 -473.75 -2.51 -26.48 16 15 C 0.07 2.65 5.38 85.55 0.46 3.11 16 16 C 0.44 22.69 7.83 87.65 0.69 23.37 16 17 O -0.63 -38.59 15.88 -3.07 -0.05 -38.64 16 18 N -0.57 -31.01 5.29 -306.98 -1.62 -32.63 16 19 C -0.34 -20.09 9.68 84.04 0.81 -19.27 16 20 H 0.07 4.70 7.16 -2.91 -0.02 4.68 16 21 C -0.01 -0.56 5.50 84.93 0.47 -0.10 16 22 N -0.92 -50.60 13.05 21.66 0.28 -50.31 16 23 Si 0.99 44.41 29.55 68.60 2.03 46.43 16 24 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 25 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 26 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 27 C 0.13 3.46 5.21 86.36 0.45 3.91 16 28 H 0.09 2.76 4.66 -25.94 -0.12 2.64 16 29 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.08 0.91 8.12 -2.39 -0.02 0.89 16 33 H 0.09 0.88 8.05 -2.39 -0.02 0.86 16 34 H 0.16 2.40 5.88 -2.91 -0.02 2.38 16 35 H 0.10 1.24 5.37 -2.38 -0.01 1.23 16 36 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.04 0.89 6.58 -2.39 -0.02 0.88 16 38 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 39 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.07 1.27 6.68 -2.39 -0.02 1.25 16 41 H 0.05 1.10 6.62 -2.38 -0.02 1.08 16 42 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.39 7.15 9.12 -74.06 -0.68 6.47 16 44 H 0.33 13.36 6.24 -89.69 -0.56 12.81 16 45 H 0.10 3.49 6.11 -2.39 -0.01 3.47 16 46 H 0.07 2.08 6.69 -2.39 -0.02 2.07 16 47 H 0.40 20.13 7.90 -92.70 -0.73 19.39 16 48 H 0.28 14.30 8.31 -92.71 -0.77 13.53 16 49 H 0.06 2.30 6.87 -2.39 -0.02 2.28 16 50 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -86.15 391.74 -0.75 -86.89 By element: Atomic # 1 Polarization: 54.29 SS G_CDS: -1.08 Total: 53.21 kcal Atomic # 6 Polarization: 13.41 SS G_CDS: 6.24 Total: 19.65 kcal Atomic # 7 Polarization: -120.41 SS G_CDS: -5.89 Total: -126.30 kcal Atomic # 8 Polarization: -77.84 SS G_CDS: -2.05 Total: -79.89 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -86.15 -0.75 -86.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570276800.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.432 kcal (2) G-P(sol) polarization free energy of solvation -86.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds