Wall clock time and date at job start Tue Mar 31 2020 23:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.50700 * 120.00536 * 2 1 4 4 C 1.33002 * 119.99867 * 180.02562 * 2 1 3 5 5 C 1.47103 * 119.99601 * 351.68117 * 4 2 1 6 6 O 1.21610 * 120.00331 * 353.75488 * 5 4 2 7 7 N 1.34784 * 119.99399 * 173.75698 * 5 4 2 8 8 C 1.46919 * 120.63317 * 353.66437 * 7 5 4 9 9 C 1.53191 * 108.77599 * 126.41306 * 8 7 5 10 10 C 1.53044 * 109.31004 * 54.63762 * 9 8 7 11 11 C 1.53047 * 109.53579 * 298.63168 * 10 9 8 12 12 C 1.52998 * 109.49724 * 181.35003 * 11 10 9 13 13 O 1.42897 * 109.47500 * 178.59455 * 12 11 10 14 14 N 1.46892 * 109.50046 * 301.41693 * 11 10 9 15 15 C 1.46900 * 110.99903 * 300.77746 * 14 11 10 16 16 C 1.50706 * 109.47355 * 179.49809 * 15 14 11 17 17 O 1.21288 * 119.99637 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00351 * 180.02562 * 16 15 14 19 19 C 1.37093 * 120.00052 * 179.97438 * 18 16 15 20 20 H 1.07993 * 120.00067 * 359.97438 * 19 18 16 21 21 C 1.38947 * 119.99804 * 179.97438 * 19 18 16 22 22 N 1.31416 * 119.99838 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 120.00369 * 0.02562 * 21 19 18 24 24 H 1.48493 * 109.47172 * 89.99602 * 23 21 19 25 25 H 1.48499 * 109.47529 * 210.00117 * 23 21 19 26 26 H 1.48501 * 109.46812 * 329.99920 * 23 21 19 27 27 C 1.46924 * 120.62454 * 173.68904 * 7 5 4 28 28 H 1.09003 * 109.46931 * 263.97744 * 1 2 3 29 29 H 1.09000 * 109.46727 * 23.96796 * 1 2 3 30 30 H 1.09000 * 109.47501 * 143.97234 * 1 2 3 31 31 H 1.08997 * 109.47376 * 239.99856 * 3 2 1 32 32 H 1.08999 * 109.46785 * 0.02562 * 3 2 1 33 33 H 1.09002 * 109.46911 * 119.99870 * 3 2 1 34 34 H 1.07997 * 120.00305 * 171.68013 * 4 2 1 35 35 H 1.09000 * 109.58958 * 6.63094 * 8 7 5 36 36 H 1.08998 * 109.70490 * 246.26941 * 8 7 5 37 37 H 1.08995 * 109.49856 * 294.68532 * 9 8 7 38 38 H 1.09002 * 109.52876 * 174.60012 * 9 8 7 39 39 H 1.09004 * 109.46118 * 178.61533 * 10 9 8 40 40 H 1.08992 * 109.45176 * 58.64533 * 10 9 8 41 41 H 1.09005 * 109.47341 * 298.59480 * 12 11 10 42 42 H 1.09002 * 109.47083 * 58.58938 * 12 11 10 43 43 H 0.96693 * 114.00536 * 179.97438 * 13 12 11 44 44 H 1.00900 * 111.00093 * 64.72531 * 14 11 10 45 45 H 1.09006 * 109.47390 * 59.49608 * 15 14 11 46 46 H 1.09000 * 109.47579 * 299.49814 * 15 14 11 47 47 H 0.97008 * 119.99905 * 0.27019 * 18 16 15 48 48 H 0.97007 * 119.99819 * 180.02562 * 22 21 19 49 49 H 1.09007 * 109.58720 * 113.80095 * 27 7 5 50 50 H 1.08998 * 109.59306 * 353.37569 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2606 1.3050 0.0000 4 6 2.1719 -1.1518 -0.0005 5 6 1.4479 -2.4191 0.1832 6 8 0.2611 -2.4085 0.4485 7 7 2.1000 -3.5920 0.0576 8 6 3.4966 -3.6271 -0.3971 9 6 4.3270 -4.4145 0.6212 10 6 3.6985 -5.7945 0.8281 11 6 2.2809 -5.6334 1.3821 12 6 1.6658 -7.0139 1.6202 13 8 0.3546 -6.8631 2.1681 14 7 2.3312 -4.8937 2.6502 15 6 3.1615 -5.5967 3.6372 16 6 3.1993 -4.8036 4.9181 17 8 2.5944 -3.7555 5.0004 18 7 3.9060 -5.2583 5.9718 19 6 3.9407 -4.5365 7.1368 20 1 3.4022 -3.6033 7.2101 21 6 4.6689 -5.0056 8.2232 22 7 4.7026 -4.3134 9.3398 23 14 5.6010 -6.6194 8.0963 24 1 6.9771 -6.3587 7.6030 25 1 5.6678 -7.2592 9.4347 26 1 4.8990 -7.5234 7.1501 27 6 1.4273 -4.8597 0.3723 28 1 -0.3633 -0.1078 1.0220 29 1 -0.3633 0.9391 -0.4175 30 1 -0.3634 -0.8311 -0.6044 31 1 2.8873 1.3627 -0.8899 32 1 1.5523 2.1335 0.0005 33 1 2.8872 1.3627 0.8900 34 1 3.2434 -1.1568 -0.1358 35 1 3.8815 -2.6103 -0.4743 36 1 3.5540 -4.1144 -1.3704 37 1 4.3451 -3.8771 1.5693 38 1 5.3451 -4.5306 0.2494 39 1 4.3013 -6.3661 1.5338 40 1 3.6581 -6.3215 -0.1251 41 1 1.6046 -7.5525 0.6745 42 1 2.2888 -7.5739 2.3176 43 1 -0.0966 -7.6999 2.3446 44 1 2.6610 -3.9510 2.5061 45 1 4.1737 -5.7069 3.2481 46 1 2.7381 -6.5820 3.8324 47 1 4.3935 -6.0943 5.9044 48 1 5.2113 -4.6408 10.0982 49 1 1.3140 -5.4490 -0.5377 50 1 0.4468 -4.6563 0.8027 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570276801.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:41 Heat of formation + Delta-G solvation = -116.273718 kcal Electronic energy + Delta-G solvation = -31261.788918 eV Core-core repulsion = 27095.670221 eV Total energy + Delta-G solvation = -4166.118698 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.69931 -40.41329 -39.54392 -37.33666 -36.35621 -36.13866 -35.58001 -33.77611 -32.91403 -32.04805 -29.28977 -28.65029 -28.23955 -26.87220 -26.37227 -25.45160 -23.13500 -21.79470 -21.28079 -20.32224 -19.80283 -18.97428 -18.39180 -18.11069 -18.02939 -17.19407 -16.70447 -16.59966 -16.25100 -15.84623 -15.76632 -15.44048 -15.13856 -15.04046 -14.79669 -14.67584 -14.61903 -14.55910 -14.23730 -13.99866 -13.86952 -13.68182 -13.32659 -13.28932 -13.19757 -12.91381 -12.86280 -12.66647 -12.46409 -12.43770 -12.12616 -11.99089 -11.94504 -11.78702 -11.53332 -11.49275 -10.79126 -10.51732 -10.45351 -10.27014 -10.11397 -9.54572 -9.14122 -8.42662 -6.04186 0.41199 1.28442 1.34291 1.43790 1.93340 2.06638 2.22044 2.33188 2.67265 3.13065 3.23792 3.43563 3.64203 3.77379 3.83252 3.91858 3.99224 4.05459 4.13005 4.24626 4.32195 4.32714 4.43827 4.54327 4.56715 4.57698 4.64962 4.66873 4.67259 4.70508 4.76590 4.85727 4.87856 4.91371 4.98667 5.07521 5.16695 5.23084 5.26465 5.50201 5.51477 5.56028 5.68250 5.90022 6.13549 6.35185 6.50050 6.58620 6.86291 7.06875 7.27185 7.37248 7.95303 8.75383 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011097 B = 0.003356 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2522.570217 B = 8340.331990 C = 9604.933292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.032 4.032 3 C -0.123 4.123 4 C -0.254 4.254 5 C 0.535 3.465 6 O -0.581 6.581 7 N -0.611 5.611 8 C 0.102 3.898 9 C -0.138 4.138 10 C -0.146 4.146 11 C 0.100 3.900 12 C 0.086 3.914 13 O -0.582 6.582 14 N -0.665 5.665 15 C 0.064 3.936 16 C 0.447 3.553 17 O -0.617 6.617 18 N -0.588 5.588 19 C -0.331 4.331 20 H 0.050 0.950 21 C -0.015 4.015 22 N -0.935 5.935 23 Si 0.968 3.032 24 H -0.253 1.253 25 H -0.274 1.274 26 H -0.232 1.232 27 C 0.135 3.865 28 H 0.055 0.945 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.154 0.846 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.038 0.962 38 H 0.110 0.890 39 H 0.080 0.920 40 H 0.103 0.897 41 H 0.080 0.920 42 H 0.058 0.942 43 H 0.389 0.611 44 H 0.336 0.664 45 H 0.080 0.920 46 H 0.108 0.892 47 H 0.390 0.610 48 H 0.280 0.720 49 H 0.092 0.908 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.338 -5.421 -28.012 28.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.033 4.033 3 C -0.180 4.180 4 C -0.274 4.274 5 C 0.328 3.672 6 O -0.464 6.464 7 N -0.343 5.343 8 C -0.019 4.019 9 C -0.177 4.177 10 C -0.185 4.185 11 C 0.009 3.991 12 C 0.008 3.992 13 O -0.389 6.389 14 N -0.298 5.298 15 C -0.068 4.068 16 C 0.235 3.765 17 O -0.502 6.502 18 N -0.230 5.230 19 C -0.460 4.460 20 H 0.068 0.932 21 C -0.214 4.214 22 N -0.576 5.576 23 Si 0.788 3.212 24 H -0.177 1.177 25 H -0.200 1.200 26 H -0.155 1.155 27 C 0.012 3.988 28 H 0.074 0.926 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.116 0.884 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.171 0.829 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.057 0.943 38 H 0.128 0.872 39 H 0.098 0.902 40 H 0.121 0.879 41 H 0.098 0.902 42 H 0.076 0.924 43 H 0.237 0.763 44 H 0.156 0.844 45 H 0.098 0.902 46 H 0.126 0.874 47 H 0.225 0.775 48 H 0.089 0.911 49 H 0.110 0.890 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.940 -4.323 -27.438 27.844 hybrid contribution 0.899 -0.854 0.858 1.508 sum 2.839 -5.177 -26.580 27.228 Atomic orbital electron populations 1.21077 0.92107 1.02502 1.02070 1.22911 0.96497 0.95939 0.87998 1.21063 1.00506 0.92494 1.03889 1.22569 1.01397 0.91130 1.12334 1.19081 0.86401 0.85402 0.76278 1.90746 1.17391 1.87833 1.50398 1.48073 1.14361 1.05600 1.66294 1.22083 0.78801 1.02979 0.98063 1.21962 1.00944 0.95714 0.99049 1.22211 0.94614 0.98162 1.03541 1.21550 0.95499 0.93642 0.88453 1.22306 0.84222 0.94194 0.98473 1.86668 1.29728 1.36212 1.86274 1.60087 1.56002 1.05067 1.08693 1.21667 0.97985 0.97807 0.89372 1.21042 0.81533 0.87418 0.86494 1.90561 1.48025 1.27273 1.84328 1.41982 1.46571 1.22737 1.11737 1.18987 1.31021 1.05512 0.90492 0.93195 1.26162 0.98206 1.03278 0.93739 1.69819 1.42316 1.41233 1.04196 0.85325 0.79308 0.77084 0.79524 1.17711 1.19953 1.15503 1.21443 0.96177 0.83903 0.97297 0.92634 0.90167 0.91574 0.88385 0.90135 0.90359 0.82862 0.88217 0.88378 0.94304 0.87186 0.90164 0.87863 0.90199 0.92419 0.76259 0.84396 0.90217 0.87404 0.77453 0.91087 0.88957 0.91927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.08 8.41 71.23 0.60 -2.48 16 2 C -0.03 -0.71 6.10 -17.62 -0.11 -0.81 16 3 C -0.12 -1.80 10.06 71.24 0.72 -1.08 16 4 C -0.25 -6.02 8.95 23.43 0.21 -5.81 16 5 C 0.54 16.29 7.47 86.57 0.65 16.94 16 6 O -0.58 -22.72 12.77 -4.06 -0.05 -22.78 16 7 N -0.61 -14.71 2.39 -823.19 -1.97 -16.68 16 8 C 0.10 1.50 6.35 86.36 0.55 2.05 16 9 C -0.14 -2.09 5.76 30.67 0.18 -1.91 16 10 C -0.15 -2.13 4.26 30.62 0.13 -2.00 16 11 C 0.10 2.28 0.47 3.61 0.00 2.28 16 12 C 0.09 1.63 5.55 71.98 0.40 2.03 16 13 O -0.58 -14.72 13.00 -148.98 -1.94 -16.66 16 14 N -0.67 -22.48 5.42 -473.75 -2.57 -25.05 16 15 C 0.06 2.10 5.38 85.56 0.46 2.56 16 16 C 0.45 21.61 7.82 87.66 0.69 22.29 16 17 O -0.62 -37.29 15.77 -3.06 -0.05 -37.33 16 18 N -0.59 -28.83 5.09 -306.99 -1.56 -30.40 16 19 C -0.33 -20.07 10.16 84.04 0.85 -19.21 16 20 H 0.05 3.63 7.39 -2.91 -0.02 3.61 16 21 C -0.02 -0.87 5.50 84.93 0.47 -0.40 16 22 N -0.94 -57.43 13.96 21.66 0.30 -57.13 16 23 Si 0.97 39.03 27.73 68.60 1.90 40.93 16 24 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 25 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 26 H -0.23 -7.86 6.52 99.48 0.65 -7.21 16 27 C 0.13 3.39 5.12 86.36 0.44 3.83 16 28 H 0.06 1.70 7.99 -2.39 -0.02 1.68 16 29 H 0.08 1.51 7.93 -2.39 -0.02 1.50 16 30 H 0.07 1.94 6.27 -2.39 -0.01 1.92 16 31 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.08 1.00 7.86 -2.39 -0.02 0.99 16 33 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.15 2.62 5.94 -2.91 -0.02 2.60 16 35 H 0.10 1.23 5.33 -2.39 -0.01 1.22 16 36 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.04 0.86 6.70 -2.39 -0.02 0.85 16 38 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.08 1.10 6.46 -2.39 -0.02 1.08 16 40 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 42 H 0.06 0.97 6.51 -2.39 -0.02 0.95 16 43 H 0.39 6.03 9.12 -74.06 -0.68 5.35 16 44 H 0.34 12.87 6.17 -89.69 -0.55 12.32 16 45 H 0.08 2.06 6.29 -2.38 -0.02 2.05 16 46 H 0.11 3.13 6.38 -2.39 -0.02 3.12 16 47 H 0.39 15.61 5.76 -92.70 -0.53 15.07 16 48 H 0.28 15.61 8.31 -92.70 -0.77 14.84 16 49 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 50 H 0.06 2.22 6.81 -2.39 -0.02 2.20 16 Total: -1.00 -93.56 388.46 -0.53 -94.09 By element: Atomic # 1 Polarization: 53.55 SS G_CDS: -0.82 Total: 52.72 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: 6.23 Total: 18.28 kcal Atomic # 7 Polarization: -123.46 SS G_CDS: -5.80 Total: -129.25 kcal Atomic # 8 Polarization: -74.73 SS G_CDS: -2.04 Total: -76.77 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 1.90 Total: 40.93 kcal Total: -93.56 -0.53 -94.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570276801.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.185 kcal (2) G-P(sol) polarization free energy of solvation -93.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds