Wall clock time and date at job start Wed Apr 1 2020 00:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47056 * 2 1 4 4 H 1.09004 * 109.47247 * 306.66635 * 3 2 1 5 5 N 1.46499 * 109.47334 * 66.66449 * 3 2 1 6 6 C 1.34777 * 119.99915 * 274.73062 * 5 3 2 7 7 C 1.50706 * 119.99710 * 180.27237 * 6 5 3 8 8 O 1.21276 * 120.00150 * 0.27180 * 6 5 3 9 9 C 1.50703 * 109.47429 * 186.66643 * 3 2 1 10 10 O 1.21277 * 119.99720 * 248.80963 * 9 3 2 11 11 N 1.34777 * 119.99707 * 68.81243 * 9 3 2 12 12 C 1.47079 * 125.63073 * 3.86691 * 11 9 3 13 13 C 1.54473 * 107.28639 * 178.89204 * 12 11 9 14 14 C 1.54370 * 102.95777 * 338.86047 * 13 12 11 15 15 C 1.47572 * 125.62823 * 184.17882 * 11 9 3 16 16 C 1.52357 * 110.38797 * 152.19360 * 14 13 12 17 17 N 1.47330 * 108.42758 * 73.49391 * 16 14 13 18 18 C 1.36940 * 121.07988 * 229.13271 * 17 16 14 19 19 H 1.08002 * 120.00063 * 154.23378 * 18 17 16 20 20 C 1.38816 * 120.00066 * 334.23778 * 18 17 16 21 21 N 1.31621 * 119.99940 * 343.73459 * 20 18 17 22 22 Si 1.86799 * 119.99777 * 163.73093 * 20 18 17 23 23 H 1.48498 * 109.47114 * 90.00430 * 22 20 18 24 24 H 1.48500 * 109.46797 * 209.99845 * 22 20 18 25 25 H 1.48501 * 109.47322 * 329.99981 * 22 20 18 26 26 C 1.47162 * 117.84223 * 49.15609 * 17 16 14 27 27 C 1.53277 * 108.55748 * 308.75053 * 26 17 16 28 28 O 1.41879 * 110.72366 * 276.11723 * 14 13 12 29 29 H 1.08998 * 109.47584 * 60.00107 * 1 2 3 30 30 H 1.09007 * 109.46709 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47139 * 299.99918 * 1 2 3 32 32 H 1.08996 * 109.47139 * 240.00082 * 2 1 3 33 33 H 1.08998 * 109.47584 * 119.99893 * 2 1 3 34 34 H 0.97001 * 119.99728 * 94.99517 * 5 3 2 35 35 H 1.08997 * 109.47252 * 60.00120 * 7 6 5 36 36 H 1.09003 * 109.46806 * 179.97438 * 7 6 5 37 37 H 1.08998 * 109.47092 * 299.99325 * 7 6 5 38 38 H 1.09005 * 109.88272 * 298.45257 * 12 11 9 39 39 H 1.09000 * 109.87942 * 59.60674 * 12 11 9 40 40 H 1.09003 * 110.87561 * 220.40169 * 13 12 11 41 41 H 1.09005 * 110.67225 * 97.22470 * 13 12 11 42 42 H 1.09003 * 110.37700 * 322.12640 * 15 11 9 43 43 H 1.08999 * 110.37752 * 84.35894 * 15 11 9 44 44 H 1.09007 * 109.67275 * 193.22622 * 16 14 13 45 45 H 1.08999 * 109.67721 * 313.72407 * 16 14 13 46 46 H 0.96993 * 119.99644 * 180.02562 * 21 20 18 47 47 H 1.09007 * 109.62222 * 68.46835 * 26 17 16 48 48 H 1.08996 * 109.62461 * 188.83685 * 26 17 16 49 49 H 1.09001 * 109.51430 * 172.95137 * 27 26 17 50 50 H 1.09003 * 109.50902 * 293.09781 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5825 1.9897 -0.8243 5 7 1.6869 2.0853 1.2682 6 6 0.4753 2.6557 1.4203 7 6 0.1144 3.3223 2.7228 8 8 -0.3245 2.6325 0.5089 9 6 3.5379 1.4458 -0.1649 10 8 4.2486 1.7886 0.7561 11 7 4.0877 1.0678 -1.3360 12 6 3.3462 0.7077 -2.5540 13 6 4.3885 0.3725 -3.6438 14 6 5.6615 1.0821 -3.1350 15 6 5.5330 0.9408 -1.6058 16 6 6.9070 0.3616 -3.6360 17 7 7.0657 0.6496 -5.0721 18 6 7.2844 -0.3566 -5.9749 19 1 6.9943 -0.2283 -7.0073 20 6 7.8789 -1.5415 -5.5632 21 7 8.5173 -1.5926 -4.4133 22 14 7.7727 -3.0634 -6.6411 23 1 8.9316 -3.0945 -7.5691 24 1 7.7905 -4.2776 -5.7862 25 1 6.5118 -3.0282 -7.4246 26 6 6.9820 2.0536 -5.5049 27 6 5.6980 2.6647 -4.9329 28 8 5.6622 2.4481 -3.5187 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.3266 2.1038 1.9971 35 1 0.8143 4.1339 2.9217 36 1 -0.8971 3.7232 2.6577 37 1 0.1651 2.5925 3.5307 38 1 2.7161 -0.1606 -2.3613 39 1 2.7328 1.5489 -2.8769 40 1 4.0829 0.7739 -4.6100 41 1 4.5461 -0.7042 -3.7073 42 1 6.0842 1.7358 -1.1036 43 1 5.8954 -0.0346 -1.2814 44 1 7.7813 0.7182 -3.0914 45 1 6.7946 -0.7123 -3.4868 46 1 8.9330 -2.4204 -4.1258 47 1 7.8465 2.6035 -5.1326 48 1 6.9596 2.1004 -6.5936 49 1 5.6815 3.7352 -5.1378 50 1 4.8320 2.1914 -5.3958 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570886805.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:00:42 Heat of formation + Delta-G solvation = -81.898703 kcal Electronic energy + Delta-G solvation = -31556.797815 eV Core-core repulsion = 27392.169729 eV Total energy + Delta-G solvation = -4164.628085 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.78859 -39.81482 -38.67971 -36.25850 -35.49031 -34.51518 -32.91258 -31.55156 -31.28682 -29.96003 -29.62153 -27.93939 -27.02314 -25.30058 -23.65812 -22.92650 -21.99605 -21.43860 -20.62964 -19.61515 -18.85760 -17.67812 -17.15954 -16.74915 -16.34773 -16.10373 -15.83192 -15.26089 -15.09783 -14.79513 -14.42613 -14.37103 -14.23976 -13.90454 -13.53646 -13.44475 -13.12091 -12.93667 -12.82925 -12.80466 -12.74176 -12.34370 -12.29104 -12.14512 -11.98871 -11.65798 -11.40555 -11.17924 -11.10980 -10.91169 -10.87133 -10.71503 -10.35344 -10.33857 -10.09060 -10.01531 -9.90257 -9.60272 -9.27746 -9.09837 -8.61326 -8.55149 -6.81620 -5.91052 -3.33746 2.38378 2.55054 2.67207 3.25596 3.29499 3.37210 3.38105 4.10604 4.30280 4.37622 4.58701 4.70541 4.81819 4.83256 4.94975 5.00512 5.07965 5.09908 5.27203 5.27908 5.34754 5.38636 5.50176 5.55179 5.56676 5.68069 5.76420 5.81341 5.82513 5.88981 5.92694 5.98606 6.08363 6.14260 6.19949 6.23361 6.26398 6.36577 6.45760 6.57658 6.73696 6.99490 7.30192 7.36856 7.51516 7.65066 7.87032 7.99047 8.07250 8.25342 9.04036 9.66981 10.24346 11.17421 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018903 B = 0.002865 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.909111 B = 9770.498284 C =10253.733080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.132 4.132 3 C 0.132 3.868 4 H 0.111 0.889 5 N -0.713 5.713 6 C 0.512 3.488 7 C -0.173 4.173 8 O -0.543 6.543 9 C 0.526 3.474 10 O -0.544 6.544 11 N -0.603 5.603 12 C 0.097 3.903 13 C -0.144 4.144 14 C 0.085 3.915 15 C 0.124 3.876 16 C 0.163 3.837 17 N -0.592 5.592 18 C -0.252 4.252 19 H 0.069 0.931 20 C 0.003 3.997 21 N -0.904 5.904 22 Si 0.903 3.097 23 H -0.286 1.286 24 H -0.289 1.289 25 H -0.279 1.279 26 C 0.109 3.891 27 C 0.046 3.954 28 O -0.374 6.374 29 H 0.061 0.939 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.410 0.590 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.030 0.970 45 H 0.099 0.901 46 H 0.256 0.744 47 H 0.026 0.974 48 H 0.063 0.937 49 H 0.082 0.918 50 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.586 5.396 10.137 18.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.171 4.171 3 C 0.023 3.977 4 H 0.129 0.871 5 N -0.367 5.367 6 C 0.299 3.701 7 C -0.233 4.233 8 O -0.420 6.420 9 C 0.313 3.687 10 O -0.422 6.422 11 N -0.336 5.336 12 C -0.026 4.026 13 C -0.182 4.182 14 C 0.043 3.957 15 C 0.002 3.998 16 C 0.037 3.963 17 N -0.316 5.316 18 C -0.381 4.381 19 H 0.087 0.913 20 C -0.196 4.196 21 N -0.548 5.548 22 Si 0.732 3.268 23 H -0.213 1.213 24 H -0.215 1.215 25 H -0.204 1.204 26 C -0.018 4.018 27 C -0.031 4.031 28 O -0.293 6.293 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.247 0.753 35 H 0.107 0.893 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.104 0.896 43 H 0.106 0.894 44 H 0.048 0.952 45 H 0.117 0.883 46 H 0.066 0.934 47 H 0.044 0.956 48 H 0.081 0.919 49 H 0.101 0.899 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -14.723 5.583 10.228 18.776 hybrid contribution 0.478 -0.982 -0.501 1.201 sum -14.246 4.601 9.727 17.853 Atomic orbital electron populations 1.21786 0.93917 1.00990 1.03199 1.21963 0.97686 0.93998 1.03463 1.20797 0.91810 0.95923 0.89176 0.87137 1.45837 1.16989 1.57842 1.16064 1.20771 0.81165 0.77797 0.90317 1.21908 1.04486 1.01925 0.94959 1.90731 1.49384 1.58932 1.42952 1.20117 0.89824 0.77098 0.81622 1.90677 1.63181 1.48509 1.39846 1.48452 1.08448 1.65794 1.10931 1.22301 0.95510 0.99907 0.84855 1.23040 0.94741 1.02545 0.97856 1.22695 0.97248 0.83396 0.92330 1.22157 0.80396 1.02721 0.94568 1.21138 0.90753 1.00078 0.84329 1.44066 1.83857 1.00428 1.03272 1.19155 1.33637 0.93521 0.91827 0.91345 1.25032 0.97311 0.99602 0.97640 1.70003 1.36183 1.26418 1.22181 0.86291 0.78015 0.82747 0.79703 1.21329 1.21475 1.20432 1.21594 0.94724 0.87235 0.98211 1.23097 0.98838 0.99618 0.81596 1.87653 1.94867 1.23912 1.22871 0.91968 0.93051 0.92351 0.90042 0.91157 0.75257 0.89263 0.88889 0.89362 0.91072 0.91445 0.89399 0.89283 0.89618 0.89432 0.95202 0.88330 0.93421 0.95563 0.91867 0.89946 0.93431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 8.55 37.16 0.32 -1.14 16 2 C -0.13 -1.38 5.51 -26.73 -0.15 -1.52 16 3 C 0.13 1.56 2.04 -69.08 -0.14 1.42 16 4 H 0.11 1.40 7.41 -51.93 -0.38 1.02 16 5 N -0.71 -7.54 4.96 -54.93 -0.27 -7.82 16 6 C 0.51 5.35 6.60 -10.98 -0.07 5.28 16 7 C -0.17 -1.09 10.32 36.01 0.37 -0.72 16 8 O -0.54 -7.45 14.25 5.56 0.08 -7.38 16 9 C 0.53 7.68 7.17 -10.98 -0.08 7.60 16 10 O -0.54 -9.31 16.07 5.56 0.09 -9.22 16 11 N -0.60 -8.93 3.33 -170.76 -0.57 -9.49 16 12 C 0.10 1.26 6.14 -2.95 -0.02 1.25 16 13 C -0.14 -2.26 5.87 -25.24 -0.15 -2.41 16 14 C 0.09 1.55 0.84 -89.65 -0.08 1.47 16 15 C 0.12 2.08 6.10 -2.88 -0.02 2.06 16 16 C 0.16 3.63 4.07 -3.92 -0.02 3.62 16 17 N -0.59 -13.90 2.98 -172.25 -0.51 -14.42 16 18 C -0.25 -6.47 9.66 -15.06 -0.15 -6.61 16 19 H 0.07 1.72 7.88 -52.49 -0.41 1.31 16 20 C 0.00 0.07 4.97 -17.43 -0.09 -0.01 16 21 N -0.90 -24.79 11.10 55.49 0.62 -24.18 16 22 Si 0.90 20.56 29.58 -169.99 -5.03 15.53 16 23 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 26 C 0.11 2.17 6.71 -3.54 -0.02 2.14 16 27 C 0.05 0.79 6.78 37.30 0.25 1.04 16 28 O -0.37 -7.00 10.28 -35.22 -0.36 -7.36 16 29 H 0.06 0.69 7.94 -51.93 -0.41 0.28 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.65 5.62 -51.93 -0.29 0.35 16 32 H 0.08 0.81 5.49 -51.93 -0.29 0.53 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.41 4.00 7.72 -40.82 -0.32 3.69 16 35 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.09 0.57 8.12 -51.93 -0.42 0.15 16 37 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.78 5.87 -51.93 -0.30 0.48 16 39 H 0.07 0.84 8.12 -51.93 -0.42 0.41 16 40 H 0.09 1.39 6.08 -51.93 -0.32 1.08 16 41 H 0.09 1.46 7.82 -51.93 -0.41 1.05 16 42 H 0.09 1.54 8.02 -51.93 -0.42 1.13 16 43 H 0.09 1.43 8.00 -51.93 -0.42 1.02 16 44 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.10 2.39 5.93 -51.93 -0.31 2.08 16 46 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 47 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.06 1.19 7.96 -51.93 -0.41 0.78 16 49 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 50 H 0.05 0.78 6.23 -51.93 -0.32 0.45 16 LS Contribution 384.75 15.07 5.80 5.80 Total: -1.00 -31.35 384.75 -8.14 -39.49 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -7.94 Total: 5.59 kcal Atomic # 6 Polarization: 13.49 SS G_CDS: -0.03 Total: 13.46 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: -0.74 Total: -55.90 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: -0.19 Total: -23.96 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.03 Total: 15.53 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.35 -8.14 -39.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570886805.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.411 kcal (2) G-P(sol) polarization free energy of solvation -31.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds