Wall clock time and date at job start Wed Apr 1 2020 00:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47056 * 2 1 4 4 H 1.09004 * 109.47247 * 306.66635 * 3 2 1 5 5 N 1.46499 * 109.47334 * 66.66449 * 3 2 1 6 6 C 1.34777 * 119.99915 * 274.73062 * 5 3 2 7 7 C 1.50706 * 119.99710 * 180.27237 * 6 5 3 8 8 O 1.21276 * 120.00150 * 0.27180 * 6 5 3 9 9 C 1.50703 * 109.47429 * 186.66643 * 3 2 1 10 10 O 1.21277 * 119.99720 * 248.80963 * 9 3 2 11 11 N 1.34777 * 119.99707 * 68.81243 * 9 3 2 12 12 C 1.47079 * 125.63073 * 3.86691 * 11 9 3 13 13 C 1.54473 * 107.28639 * 178.89204 * 12 11 9 14 14 C 1.54370 * 102.95777 * 338.86047 * 13 12 11 15 15 C 1.47572 * 125.62823 * 184.17882 * 11 9 3 16 16 C 1.52357 * 110.38797 * 152.19360 * 14 13 12 17 17 N 1.47330 * 108.42758 * 73.49391 * 16 14 13 18 18 C 1.36940 * 121.07988 * 229.13271 * 17 16 14 19 19 H 1.08002 * 120.00063 * 154.23378 * 18 17 16 20 20 C 1.38816 * 120.00066 * 334.23778 * 18 17 16 21 21 N 1.31621 * 119.99940 * 343.73459 * 20 18 17 22 22 Si 1.86799 * 119.99777 * 163.73093 * 20 18 17 23 23 H 1.48498 * 109.47114 * 90.00430 * 22 20 18 24 24 H 1.48500 * 109.46797 * 209.99845 * 22 20 18 25 25 H 1.48501 * 109.47322 * 329.99981 * 22 20 18 26 26 C 1.47162 * 117.84223 * 49.15609 * 17 16 14 27 27 C 1.53277 * 108.55748 * 308.75053 * 26 17 16 28 28 O 1.41879 * 110.72366 * 276.11723 * 14 13 12 29 29 H 1.08998 * 109.47584 * 60.00107 * 1 2 3 30 30 H 1.09007 * 109.46709 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47139 * 299.99918 * 1 2 3 32 32 H 1.08996 * 109.47139 * 240.00082 * 2 1 3 33 33 H 1.08998 * 109.47584 * 119.99893 * 2 1 3 34 34 H 0.97001 * 119.99728 * 94.99517 * 5 3 2 35 35 H 1.08997 * 109.47252 * 60.00120 * 7 6 5 36 36 H 1.09003 * 109.46806 * 179.97438 * 7 6 5 37 37 H 1.08998 * 109.47092 * 299.99325 * 7 6 5 38 38 H 1.09005 * 109.88272 * 298.45257 * 12 11 9 39 39 H 1.09000 * 109.87942 * 59.60674 * 12 11 9 40 40 H 1.09003 * 110.87561 * 220.40169 * 13 12 11 41 41 H 1.09005 * 110.67225 * 97.22470 * 13 12 11 42 42 H 1.09003 * 110.37700 * 322.12640 * 15 11 9 43 43 H 1.08999 * 110.37752 * 84.35894 * 15 11 9 44 44 H 1.09007 * 109.67275 * 193.22622 * 16 14 13 45 45 H 1.08999 * 109.67721 * 313.72407 * 16 14 13 46 46 H 0.96993 * 119.99644 * 180.02562 * 21 20 18 47 47 H 1.09007 * 109.62222 * 68.46835 * 26 17 16 48 48 H 1.08996 * 109.62461 * 188.83685 * 26 17 16 49 49 H 1.09001 * 109.51430 * 172.95137 * 27 26 17 50 50 H 1.09003 * 109.50902 * 293.09781 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5825 1.9897 -0.8243 5 7 1.6869 2.0853 1.2682 6 6 0.4753 2.6557 1.4203 7 6 0.1144 3.3223 2.7228 8 8 -0.3245 2.6325 0.5089 9 6 3.5379 1.4458 -0.1649 10 8 4.2486 1.7886 0.7561 11 7 4.0877 1.0678 -1.3360 12 6 3.3462 0.7077 -2.5540 13 6 4.3885 0.3725 -3.6438 14 6 5.6615 1.0821 -3.1350 15 6 5.5330 0.9408 -1.6058 16 6 6.9070 0.3616 -3.6360 17 7 7.0657 0.6496 -5.0721 18 6 7.2844 -0.3566 -5.9749 19 1 6.9943 -0.2283 -7.0073 20 6 7.8789 -1.5415 -5.5632 21 7 8.5173 -1.5926 -4.4133 22 14 7.7727 -3.0634 -6.6411 23 1 8.9316 -3.0945 -7.5691 24 1 7.7905 -4.2776 -5.7862 25 1 6.5118 -3.0282 -7.4246 26 6 6.9820 2.0536 -5.5049 27 6 5.6980 2.6647 -4.9329 28 8 5.6622 2.4481 -3.5187 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.3266 2.1038 1.9971 35 1 0.8143 4.1339 2.9217 36 1 -0.8971 3.7232 2.6577 37 1 0.1651 2.5925 3.5307 38 1 2.7161 -0.1606 -2.3613 39 1 2.7328 1.5489 -2.8769 40 1 4.0829 0.7739 -4.6100 41 1 4.5461 -0.7042 -3.7073 42 1 6.0842 1.7358 -1.1036 43 1 5.8954 -0.0346 -1.2814 44 1 7.7813 0.7182 -3.0914 45 1 6.7946 -0.7123 -3.4868 46 1 8.9330 -2.4204 -4.1258 47 1 7.8465 2.6035 -5.1326 48 1 6.9596 2.1004 -6.5936 49 1 5.6815 3.7352 -5.1378 50 1 4.8320 2.1914 -5.3958 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570886805.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:00:41 Heat of formation + Delta-G solvation = -103.878069 kcal Electronic energy + Delta-G solvation = -31557.750912 eV Core-core repulsion = 27392.169729 eV Total energy + Delta-G solvation = -4165.581182 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.93350 -40.97102 -39.89105 -37.61682 -36.44801 -36.26249 -33.80928 -33.24167 -32.79430 -30.93310 -30.61675 -29.30503 -28.41492 -26.75223 -25.22842 -24.22614 -23.09186 -22.82792 -21.49881 -20.81149 -20.30469 -18.91730 -18.71722 -17.87964 -17.44988 -17.37314 -16.88370 -16.54852 -16.46675 -16.15177 -15.87548 -15.75944 -15.30844 -15.15564 -15.02810 -14.62807 -14.53467 -14.19726 -14.14185 -13.87526 -13.65113 -13.42289 -13.32055 -13.10374 -13.00818 -12.89394 -12.80200 -12.65822 -12.50485 -12.46826 -12.27445 -12.15599 -11.96440 -11.82334 -11.73252 -11.16901 -11.07180 -10.92832 -10.77218 -10.47357 -10.15229 -9.77521 -8.72272 -7.88684 -5.34597 1.36086 1.47837 1.50431 1.55314 1.59194 1.70303 2.33854 2.49313 2.71625 3.19014 3.26412 3.45445 3.55395 3.81608 3.84730 3.90700 3.97177 4.00250 4.17974 4.26793 4.33689 4.37497 4.45229 4.48579 4.56327 4.57939 4.60548 4.67235 4.67760 4.74037 4.85097 4.90352 4.95809 5.00901 5.04800 5.05641 5.10703 5.14051 5.17857 5.25948 5.34056 5.42230 5.52044 5.63375 6.30136 6.34559 6.40538 6.51468 6.87825 7.07962 7.21656 7.76168 8.31026 9.17747 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018903 B = 0.002865 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.909111 B = 9770.498284 C =10253.733080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.127 4.127 3 C 0.139 3.861 4 H 0.107 0.893 5 N -0.712 5.712 6 C 0.508 3.492 7 C -0.166 4.166 8 O -0.578 6.578 9 C 0.526 3.474 10 O -0.572 6.572 11 N -0.603 5.603 12 C 0.103 3.897 13 C -0.137 4.137 14 C 0.091 3.909 15 C 0.129 3.871 16 C 0.175 3.825 17 N -0.608 5.608 18 C -0.257 4.257 19 H 0.074 0.926 20 C -0.048 4.048 21 N -0.936 5.936 22 Si 0.966 3.034 23 H -0.290 1.290 24 H -0.294 1.294 25 H -0.266 1.266 26 C 0.103 3.897 27 C 0.053 3.947 28 O -0.384 6.384 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.049 0.951 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.415 0.585 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.110 0.890 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.086 0.914 44 H -0.008 1.008 45 H 0.075 0.925 46 H 0.251 0.749 47 H 0.012 0.988 48 H 0.074 0.926 49 H 0.115 0.885 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.988 5.624 10.061 20.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.165 4.165 3 C 0.031 3.969 4 H 0.125 0.875 5 N -0.366 5.366 6 C 0.298 3.702 7 C -0.225 4.225 8 O -0.458 6.458 9 C 0.314 3.686 10 O -0.452 6.452 11 N -0.336 5.336 12 C -0.018 4.018 13 C -0.175 4.175 14 C 0.050 3.950 15 C 0.006 3.994 16 C 0.049 3.951 17 N -0.333 5.333 18 C -0.387 4.387 19 H 0.092 0.908 20 C -0.243 4.243 21 N -0.583 5.583 22 Si 0.794 3.206 23 H -0.217 1.217 24 H -0.220 1.220 25 H -0.191 1.191 26 C -0.022 4.022 27 C -0.024 4.024 28 O -0.303 6.303 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.107 0.893 33 H 0.092 0.908 34 H 0.253 0.747 35 H 0.122 0.878 36 H 0.114 0.886 37 H 0.129 0.871 38 H 0.117 0.883 39 H 0.101 0.899 40 H 0.110 0.890 41 H 0.098 0.902 42 H 0.087 0.913 43 H 0.104 0.896 44 H 0.010 0.990 45 H 0.093 0.907 46 H 0.060 0.940 47 H 0.030 0.970 48 H 0.093 0.907 49 H 0.133 0.867 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.150 5.837 10.145 20.763 hybrid contribution 1.309 -0.976 -0.497 1.706 sum -15.841 4.861 9.648 19.174 Atomic orbital electron populations 1.21704 0.93567 1.01588 1.02302 1.21942 0.97753 0.92870 1.03976 1.20720 0.89305 0.97052 0.89868 0.87533 1.45904 1.17326 1.57751 1.15647 1.21502 0.80398 0.77072 0.91245 1.21934 1.04901 1.02553 0.93142 1.90716 1.50286 1.60315 1.44495 1.20618 0.90876 0.76143 0.80914 1.90663 1.64132 1.49702 1.40743 1.48459 1.07484 1.65874 1.11749 1.22379 0.94668 1.01712 0.83086 1.22934 0.93975 1.01615 0.98943 1.22411 0.96388 0.83142 0.93102 1.21931 0.81926 1.02030 0.93558 1.20866 0.91440 0.98984 0.83835 1.44327 1.83917 1.01653 1.03377 1.19489 1.32669 0.94125 0.92394 0.90840 1.25751 0.97493 1.02192 0.98895 1.70167 1.37537 1.26626 1.23923 0.85302 0.78129 0.79202 0.77962 1.21666 1.22003 1.19063 1.21780 0.95962 0.85402 0.99097 1.23157 0.97327 1.01413 0.80520 1.87653 1.94763 1.23879 1.23997 0.92887 0.91640 0.93229 0.89339 0.90835 0.74713 0.87770 0.88618 0.87133 0.88270 0.89907 0.89025 0.90159 0.91291 0.89614 0.99021 0.90675 0.94012 0.97009 0.90739 0.86747 0.92068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 8.55 71.98 0.62 -1.88 16 2 C -0.13 -2.36 5.51 30.59 0.17 -2.19 16 3 C 0.14 3.08 2.04 44.25 0.09 3.17 16 4 H 0.11 2.50 7.41 -2.38 -0.02 2.49 16 5 N -0.71 -13.96 4.96 -446.08 -2.21 -16.17 16 6 C 0.51 9.78 6.60 87.66 0.58 10.35 16 7 C -0.17 -1.70 10.32 71.24 0.74 -0.96 16 8 O -0.58 -15.18 14.25 -3.02 -0.04 -15.22 16 9 C 0.53 14.76 7.17 87.66 0.63 15.39 16 10 O -0.57 -19.34 16.07 -3.02 -0.05 -19.39 16 11 N -0.60 -17.18 3.33 -812.55 -2.71 -19.88 16 12 C 0.10 2.46 6.14 86.77 0.53 2.99 16 13 C -0.14 -4.11 5.87 31.56 0.19 -3.93 16 14 C 0.09 3.32 0.84 -10.17 -0.01 3.31 16 15 C 0.13 4.38 6.10 86.55 0.53 4.91 16 16 C 0.18 8.07 4.07 86.01 0.35 8.42 16 17 N -0.61 -28.90 2.98 -698.87 -2.08 -30.99 16 18 C -0.26 -13.22 9.66 84.03 0.81 -12.41 16 19 H 0.07 3.64 7.88 -2.91 -0.02 3.62 16 20 C -0.05 -2.53 4.97 84.86 0.42 -2.11 16 21 N -0.94 -53.02 11.10 21.65 0.24 -52.78 16 22 Si 0.97 42.52 29.58 68.60 2.03 44.55 16 23 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 24 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 25 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 26 C 0.10 4.06 6.71 86.35 0.58 4.64 16 27 C 0.05 1.70 6.78 72.07 0.49 2.19 16 28 O -0.38 -14.01 10.28 -148.95 -1.53 -15.54 16 29 H 0.05 1.09 7.94 -2.39 -0.02 1.07 16 30 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.05 1.01 5.62 -2.39 -0.01 1.00 16 32 H 0.09 1.52 5.49 -2.39 -0.01 1.50 16 33 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.42 7.48 7.72 -92.71 -0.72 6.76 16 35 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.09 0.96 8.12 -2.39 -0.02 0.95 16 37 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.10 1.86 5.87 -2.38 -0.01 1.84 16 39 H 0.08 1.79 8.12 -2.39 -0.02 1.77 16 40 H 0.09 2.70 6.08 -2.39 -0.01 2.68 16 41 H 0.08 2.57 7.82 -2.38 -0.02 2.55 16 42 H 0.07 2.57 8.02 -2.39 -0.02 2.55 16 43 H 0.09 2.91 8.00 -2.39 -0.02 2.90 16 44 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 45 H 0.08 3.80 5.93 -2.39 -0.01 3.79 16 46 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16 47 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 48 H 0.07 2.72 7.96 -2.39 -0.02 2.71 16 49 H 0.11 2.96 8.14 -2.39 -0.02 2.95 16 50 H 0.06 1.83 6.23 -2.39 -0.01 1.81 16 Total: -1.00 -69.15 384.75 0.59 -68.56 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: 0.24 Total: 24.97 kcal Atomic # 6 Polarization: 25.20 SS G_CDS: 6.71 Total: 31.90 kcal Atomic # 7 Polarization: -113.06 SS G_CDS: -6.76 Total: -119.83 kcal Atomic # 8 Polarization: -48.53 SS G_CDS: -1.62 Total: -50.15 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -69.15 0.59 -68.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570886805.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.318 kcal (2) G-P(sol) polarization free energy of solvation -69.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds