Wall clock time and date at job start Wed Apr 1 2020 00:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53005 * 109.46954 * 2 1 4 4 H 1.09000 * 109.46860 * 55.00007 * 3 2 1 5 5 N 1.46500 * 109.47010 * 294.99930 * 3 2 1 6 6 C 1.34772 * 119.99988 * 85.00352 * 5 3 2 7 7 C 1.50695 * 120.00003 * 179.97438 * 6 5 3 8 8 O 1.21281 * 120.00216 * 359.97438 * 6 5 3 9 9 C 1.50701 * 109.46647 * 175.00023 * 3 2 1 10 10 O 1.21288 * 120.00025 * 120.00284 * 9 3 2 11 11 N 1.34778 * 120.00204 * 299.99953 * 9 3 2 12 12 C 1.47486 * 125.65995 * 0.02562 * 11 9 3 13 13 C 1.55023 * 104.90097 * 204.02581 * 12 11 9 14 14 C 1.54517 * 101.52068 * 323.62560 * 13 12 11 15 15 C 1.47190 * 125.66460 * 179.72332 * 11 9 3 16 16 C 1.52510 * 110.05809 * 153.10077 * 14 13 12 17 17 N 1.47307 * 108.38414 * 72.02597 * 16 14 13 18 18 C 1.36930 * 121.05687 * 229.39547 * 17 16 14 19 19 H 1.08000 * 120.00069 * 154.19037 * 18 17 16 20 20 C 1.38817 * 120.00193 * 334.19007 * 18 17 16 21 21 N 1.31616 * 120.00044 * 159.51535 * 20 18 17 22 22 Si 1.86792 * 119.99836 * 339.50773 * 20 18 17 23 23 H 1.48504 * 109.46944 * 90.86385 * 22 20 18 24 24 H 1.48497 * 109.47400 * 210.86121 * 22 20 18 25 25 H 1.48499 * 109.47420 * 330.86382 * 22 20 18 26 26 C 1.47155 * 117.88147 * 49.41532 * 17 16 14 27 27 C 1.53287 * 108.54092 * 308.88886 * 26 17 16 28 28 O 1.42072 * 110.33742 * 276.05492 * 14 13 12 29 29 H 1.08997 * 109.46849 * 60.00084 * 1 2 3 30 30 H 1.08994 * 109.47182 * 300.00263 * 1 2 3 31 31 H 1.08998 * 109.46800 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46849 * 119.99916 * 2 1 3 33 33 H 1.09001 * 109.47041 * 240.00141 * 2 1 3 34 34 H 0.97002 * 119.99685 * 264.99664 * 5 3 2 35 35 H 1.09004 * 109.47047 * 60.00279 * 7 6 5 36 36 H 1.09004 * 109.47394 * 180.02562 * 7 6 5 37 37 H 1.09002 * 109.47448 * 299.99798 * 7 6 5 38 38 H 1.08995 * 110.35895 * 322.88659 * 12 11 9 39 39 H 1.09008 * 110.35139 * 85.17452 * 12 11 9 40 40 H 1.08996 * 111.01546 * 81.68436 * 13 12 11 41 41 H 1.09001 * 111.01341 * 205.53023 * 13 12 11 42 42 H 1.08995 * 109.90495 * 297.85611 * 15 11 9 43 43 H 1.09002 * 109.90489 * 59.11616 * 15 11 9 44 44 H 1.09005 * 109.67957 * 191.75084 * 16 14 13 45 45 H 1.09002 * 109.68452 * 312.26216 * 16 14 13 46 46 H 0.97002 * 120.00115 * 180.02562 * 21 20 18 47 47 H 1.09002 * 109.62785 * 68.60497 * 26 17 16 48 48 H 1.08999 * 109.62699 * 188.98566 * 26 17 16 49 49 H 1.09004 * 109.50783 * 172.80076 * 27 26 17 50 50 H 1.08994 * 109.51113 * 292.94833 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6525 2.0975 -1.2518 6 6 0.4352 2.6644 -1.3670 7 6 0.0367 3.3386 -2.6544 8 8 -0.3395 2.6320 -0.4344 9 6 3.5420 1.4443 0.1238 10 8 4.2218 1.9436 -0.7478 11 7 4.1298 0.8911 1.2031 12 6 3.4276 0.2521 2.3318 13 6 4.4152 0.3503 3.5227 14 6 5.7733 0.1441 2.8152 15 6 5.5794 0.8187 1.4482 16 6 6.8834 0.8312 3.6036 17 7 7.1269 0.0579 4.8334 18 6 7.1797 0.6728 6.0558 19 1 6.9424 0.1168 6.9507 20 6 7.5381 2.0110 6.1447 21 7 7.2132 2.7098 7.2116 22 14 8.4816 2.8197 4.7501 23 1 7.5235 3.4162 3.7848 24 1 9.3593 3.8847 5.2985 25 1 9.3120 1.8014 4.0583 26 6 7.3122 -1.3964 4.7066 27 6 6.1497 -1.9661 3.8856 28 8 6.0417 -1.2419 2.6561 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 2.2720 2.1232 -1.9978 35 1 0.0680 2.6145 -3.4686 36 1 -0.9741 3.7353 -2.5592 37 1 0.7281 4.1541 -2.8667 38 1 2.5063 0.7888 2.5580 39 1 3.2128 -0.7917 2.1026 40 1 4.3644 1.3324 3.9927 41 1 4.2292 -0.4392 4.2508 42 1 6.0585 0.2270 0.6682 43 1 6.0029 1.8229 1.4687 44 1 7.7932 0.8638 3.0041 45 1 6.5772 1.8451 3.8613 46 1 7.4633 3.6449 7.2736 47 1 8.2545 -1.6026 4.1989 48 1 7.3225 -1.8520 5.6967 49 1 6.3358 -3.0188 3.6729 50 1 5.2224 -1.8662 4.4496 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570886807.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:00:49 Heat of formation + Delta-G solvation = -73.738515 kcal Electronic energy + Delta-G solvation = -31710.178815 eV Core-core repulsion = 27545.904582 eV Total energy + Delta-G solvation = -4164.274233 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.93947 -39.98753 -38.86167 -36.44216 -35.58031 -34.75909 -32.98056 -31.68125 -31.65302 -30.00713 -29.85994 -28.28119 -27.20441 -25.42020 -23.89151 -23.32591 -21.99053 -21.38804 -20.69693 -19.71596 -19.27250 -17.75370 -17.40938 -16.83311 -16.44858 -16.24918 -15.98980 -15.48311 -15.26550 -14.98196 -14.77133 -14.33097 -14.23462 -14.10571 -13.86794 -13.71727 -13.23900 -13.07506 -12.92873 -12.85290 -12.60282 -12.53177 -12.36327 -12.20133 -12.09566 -11.89042 -11.75568 -11.58701 -11.30954 -11.20171 -10.96835 -10.81230 -10.46737 -10.28144 -10.12017 -10.01604 -9.81843 -9.60165 -9.48360 -9.30471 -8.74166 -8.65149 -7.12047 -6.06784 -3.43831 2.34225 2.42729 2.57936 3.15697 3.21861 3.41469 3.42497 3.90474 4.17147 4.40366 4.53026 4.58008 4.62806 4.66764 4.77976 4.94528 5.00148 5.03545 5.07321 5.14103 5.25908 5.27689 5.33294 5.45642 5.49781 5.53595 5.58757 5.61557 5.69979 5.75126 5.75914 5.85076 5.86416 5.98915 6.03151 6.08100 6.15723 6.20401 6.21334 6.30865 6.37945 6.39880 6.62211 7.24995 7.35327 7.57300 7.74812 7.90899 7.98890 8.18712 8.75609 9.57074 9.92818 11.08591 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016347 B = 0.003187 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.448441 B = 8783.140505 C = 9406.233451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.137 4.137 3 C 0.132 3.868 4 H 0.115 0.885 5 N -0.713 5.713 6 C 0.513 3.487 7 C -0.173 4.173 8 O -0.541 6.541 9 C 0.526 3.474 10 O -0.542 6.542 11 N -0.606 5.606 12 C 0.096 3.904 13 C -0.146 4.146 14 C 0.095 3.905 15 C 0.123 3.877 16 C 0.111 3.889 17 N -0.604 5.604 18 C -0.261 4.261 19 H 0.090 0.910 20 C 0.026 3.974 21 N -0.904 5.904 22 Si 0.876 3.124 23 H -0.287 1.287 24 H -0.300 1.300 25 H -0.270 1.270 26 C 0.112 3.888 27 C 0.044 3.956 28 O -0.372 6.372 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.410 0.590 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.035 0.965 45 H 0.085 0.915 46 H 0.264 0.736 47 H 0.031 0.969 48 H 0.073 0.927 49 H 0.089 0.911 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.080 -5.969 -16.613 21.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.176 4.176 3 C 0.023 3.977 4 H 0.132 0.868 5 N -0.367 5.367 6 C 0.300 3.700 7 C -0.233 4.233 8 O -0.419 6.419 9 C 0.313 3.687 10 O -0.420 6.420 11 N -0.340 5.340 12 C -0.026 4.026 13 C -0.184 4.184 14 C 0.053 3.947 15 C 0.001 3.999 16 C -0.015 4.015 17 N -0.329 5.329 18 C -0.389 4.389 19 H 0.107 0.893 20 C -0.173 4.173 21 N -0.546 5.546 22 Si 0.706 3.294 23 H -0.215 1.215 24 H -0.228 1.228 25 H -0.195 1.195 26 C -0.014 4.014 27 C -0.034 4.034 28 O -0.291 6.291 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.247 0.753 35 H 0.106 0.894 36 H 0.112 0.888 37 H 0.108 0.892 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.109 0.891 41 H 0.114 0.886 42 H 0.100 0.900 43 H 0.101 0.899 44 H 0.053 0.947 45 H 0.103 0.897 46 H 0.074 0.926 47 H 0.049 0.951 48 H 0.092 0.908 49 H 0.107 0.893 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.263 -5.612 -16.518 21.324 hybrid contribution 1.024 0.682 -0.723 1.427 sum -11.238 -4.930 -17.241 21.163 Atomic orbital electron populations 1.21786 0.93899 1.01001 1.03203 1.22066 0.97799 0.94014 1.03691 1.20784 0.91170 0.95860 0.89866 0.86784 1.45807 1.17167 1.57710 1.16028 1.20767 0.81031 0.77818 0.90374 1.21910 1.04359 1.01863 0.95149 1.90741 1.51176 1.58900 1.41052 1.20188 0.89788 0.77818 0.80864 1.90692 1.65276 1.46110 1.39911 1.48456 1.07986 1.57084 1.20437 1.22629 0.96281 0.97853 0.85867 1.23233 0.93700 1.04943 0.96476 1.22328 0.95604 0.83371 0.93384 1.21836 0.80574 1.01005 0.96508 1.21812 0.94899 0.96392 0.88395 1.44371 1.83383 1.02079 1.03062 1.18878 1.41350 0.94494 0.84173 0.89276 1.25231 0.99084 0.96663 0.96350 1.69813 1.47056 1.08375 1.29369 0.87097 0.81098 0.78975 0.82199 1.21476 1.22804 1.19497 1.21630 0.95380 0.85381 0.99003 1.23159 0.99279 0.94944 0.86005 1.87706 1.92217 1.18951 1.30264 0.92503 0.91821 0.93039 0.89699 0.91280 0.75339 0.89370 0.88835 0.89234 0.90300 0.90514 0.89069 0.88581 0.90027 0.89869 0.94694 0.89715 0.92578 0.95056 0.90825 0.89331 0.92775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.52 37.16 0.32 -1.08 16 2 C -0.14 -1.34 5.47 -26.72 -0.15 -1.48 16 3 C 0.13 1.50 2.02 -69.08 -0.14 1.36 16 4 H 0.11 1.40 7.29 -51.93 -0.38 1.02 16 5 N -0.71 -7.28 4.90 -54.93 -0.27 -7.55 16 6 C 0.51 5.26 6.51 -10.99 -0.07 5.19 16 7 C -0.17 -1.07 10.32 36.00 0.37 -0.70 16 8 O -0.54 -7.39 14.22 5.56 0.08 -7.31 16 9 C 0.53 7.34 7.28 -10.98 -0.08 7.26 16 10 O -0.54 -8.95 16.17 5.55 0.09 -8.86 16 11 N -0.61 -8.51 3.33 -170.66 -0.57 -9.08 16 12 C 0.10 1.17 5.14 -2.43 -0.01 1.16 16 13 C -0.15 -2.21 5.91 -24.87 -0.15 -2.36 16 14 C 0.10 1.61 0.83 -89.72 -0.07 1.53 16 15 C 0.12 1.96 6.25 -3.31 -0.02 1.94 16 16 C 0.11 2.31 2.92 -3.85 -0.01 2.30 16 17 N -0.60 -13.44 2.73 -172.18 -0.47 -13.91 16 18 C -0.26 -6.86 10.10 -15.06 -0.15 -7.01 16 19 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 20 C 0.03 0.73 5.25 -17.43 -0.09 0.64 16 21 N -0.90 -26.67 13.97 55.49 0.78 -25.90 16 22 Si 0.88 21.71 24.27 -169.99 -4.13 17.58 16 23 H -0.29 -6.85 6.54 56.52 0.37 -6.48 16 24 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 25 H -0.27 -6.63 6.62 56.52 0.37 -6.26 16 26 C 0.11 2.03 6.72 -3.54 -0.02 2.01 16 27 C 0.04 0.66 6.76 37.31 0.25 0.91 16 28 O -0.37 -6.14 10.21 -35.23 -0.36 -6.50 16 29 H 0.06 0.60 5.64 -51.93 -0.29 0.31 16 30 H 0.06 0.69 7.85 -51.93 -0.41 0.29 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.78 4.88 -51.93 -0.25 0.53 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.41 3.80 7.79 -40.82 -0.32 3.48 16 35 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.09 0.57 8.12 -51.93 -0.42 0.15 16 37 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.83 7.41 -51.93 -0.39 0.45 16 39 H 0.08 0.84 6.98 -51.92 -0.36 0.47 16 40 H 0.09 1.54 7.86 -51.93 -0.41 1.14 16 41 H 0.10 1.44 5.98 -51.93 -0.31 1.13 16 42 H 0.08 1.29 8.06 -51.93 -0.42 0.87 16 43 H 0.08 1.39 7.79 -51.93 -0.40 0.98 16 44 H 0.04 0.75 6.85 -51.93 -0.36 0.40 16 45 H 0.08 1.92 4.46 -51.93 -0.23 1.69 16 46 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 47 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.07 1.29 7.96 -51.93 -0.41 0.87 16 49 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 50 H 0.05 0.79 6.13 -51.93 -0.32 0.47 16 LS Contribution 376.33 15.07 5.67 5.67 Total: -1.00 -32.62 376.33 -7.04 -39.66 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -7.83 Total: 4.53 kcal Atomic # 6 Polarization: 11.69 SS G_CDS: -0.03 Total: 11.66 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: -0.53 Total: -56.44 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.19 Total: -22.67 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.13 Total: 17.58 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.62 -7.04 -39.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570886807.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.080 kcal (2) G-P(sol) polarization free energy of solvation -32.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds