Wall clock time and date at job start Tue Mar 31 2020 23:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47002 * 2 1 4 4 C 1.50695 * 109.47093 * 120.00052 * 2 1 3 5 5 O 1.20828 * 120.00348 * 263.86242 * 4 2 1 6 6 O 1.34230 * 120.00160 * 83.58867 * 4 2 1 7 7 N 1.46902 * 109.47216 * 240.00153 * 2 1 3 8 8 C 1.46902 * 110.99998 * 187.04844 * 7 2 1 9 9 C 1.53238 * 109.34064 * 172.74538 * 8 7 2 10 10 N 1.47081 * 108.51830 * 53.83250 * 9 8 7 11 11 C 1.34775 * 120.87939 * 128.79704 * 10 9 8 12 12 O 1.21588 * 119.99677 * 184.32480 * 11 10 9 13 13 N 1.34776 * 120.00007 * 4.31952 * 11 10 9 14 14 C 1.46505 * 119.99725 * 174.83783 * 13 11 10 15 15 C 1.52996 * 109.46855 * 184.99454 * 14 13 11 16 16 C 1.50699 * 115.54882 * 280.18349 * 15 14 13 17 17 H 1.08003 * 120.00239 * 125.52366 * 16 15 14 18 18 C 1.37879 * 120.00271 * 305.51945 * 16 15 14 19 19 N 1.31516 * 119.99839 * 187.41555 * 18 16 15 20 20 Si 1.86793 * 119.99816 * 7.41737 * 18 16 15 21 21 H 1.48498 * 109.47265 * 95.43512 * 20 18 16 22 22 H 1.48503 * 109.47191 * 215.43369 * 20 18 16 23 23 H 1.48507 * 109.47229 * 335.43145 * 20 18 16 24 24 C 1.52997 * 117.49718 * 134.47763 * 15 14 13 25 25 C 1.53002 * 60.00134 * 252.50703 * 24 15 14 26 26 C 1.47079 * 118.23784 * 308.81094 * 10 9 8 27 27 C 1.46899 * 110.99785 * 62.75088 * 7 2 1 28 28 H 1.08992 * 109.47283 * 299.99985 * 1 2 3 29 29 H 1.09000 * 109.47190 * 59.99974 * 1 2 3 30 30 H 1.09002 * 109.47082 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46807 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47169 * 300.00038 * 3 2 1 33 33 H 1.09003 * 109.46609 * 59.99990 * 3 2 1 34 34 H 0.96700 * 117.00540 * 180.27424 * 6 4 2 35 35 H 1.08998 * 109.49197 * 292.71082 * 8 7 2 36 36 H 1.09003 * 109.48984 * 52.78706 * 8 7 2 37 37 H 1.09005 * 109.62988 * 294.12402 * 9 8 7 38 38 H 1.09000 * 109.63187 * 173.54144 * 9 8 7 39 39 H 0.97000 * 119.99993 * 354.83716 * 13 11 10 40 40 H 1.09000 * 109.47360 * 304.99714 * 14 13 11 41 41 H 1.09005 * 109.46913 * 64.99764 * 14 13 11 42 42 H 0.97000 * 119.99575 * 179.97438 * 19 18 16 43 43 H 1.08995 * 117.49968 * 359.97438 * 24 15 14 44 44 H 1.09007 * 117.49832 * 145.01933 * 24 15 14 45 45 H 1.08991 * 117.50290 * 252.51301 * 25 24 15 46 46 H 1.08999 * 117.51313 * 107.47382 * 25 24 15 47 47 H 1.08994 * 109.63285 * 291.47658 * 26 10 9 48 48 H 1.09005 * 109.63134 * 170.89472 * 26 10 9 49 49 H 1.08996 * 109.49141 * 307.20727 * 27 7 2 50 50 H 1.08993 * 109.49962 * 67.26705 * 27 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.3392 -0.0756 2.2116 6 8 2.1336 -2.0488 1.2383 7 7 2.0197 -0.6925 -1.1995 8 6 3.4784 -0.8595 -1.1522 9 6 3.9267 -1.7395 -2.3239 10 7 3.4074 -1.1572 -3.5708 11 6 4.2231 -0.9260 -4.6185 12 8 3.7941 -0.3723 -5.6123 13 7 5.5143 -1.3086 -4.5645 14 6 6.3720 -1.1604 -5.7429 15 6 7.7420 -1.7788 -5.4575 16 6 8.6855 -0.9243 -4.6509 17 1 9.1286 -1.3146 -3.7466 18 6 8.9833 0.3559 -5.0674 19 7 9.9144 1.0488 -4.4489 20 14 8.0641 1.1062 -6.5101 21 1 6.9324 1.9241 -6.0047 22 1 8.9875 1.9679 -7.2913 23 1 7.5417 0.0230 -7.3815 24 6 8.3495 -2.6785 -6.5356 25 6 7.8034 -3.2928 -5.2451 26 6 1.9745 -0.8337 -3.6439 27 6 1.6031 0.0107 -2.4201 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 2.4570 -2.4599 2.0517 35 1 3.9588 0.1162 -1.2254 36 1 3.7598 -1.3343 -0.2123 37 1 3.5306 -2.7472 -2.1976 38 1 5.0155 -1.7731 -2.3611 39 1 5.8757 -1.6819 -3.7454 40 1 5.9140 -1.6680 -6.5919 41 1 6.4922 -0.1020 -5.9741 42 1 10.1241 1.9493 -4.7422 43 1 7.7729 -2.8302 -7.4481 44 1 9.4319 -2.6523 -6.6619 45 1 8.5264 -3.6707 -4.5224 46 1 6.8676 -3.8481 -5.3085 47 1 1.3908 -1.7542 -3.6444 48 1 1.7727 -0.2683 -4.5537 49 1 0.5246 0.1668 -2.3998 50 1 2.1093 0.9744 -2.4756 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603260320.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:18 Heat of formation + Delta-G solvation = -84.554866 kcal Electronic energy + Delta-G solvation = -31434.903714 eV Core-core repulsion = 27270.160448 eV Total energy + Delta-G solvation = -4164.743265 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.08638 -41.27615 -39.62113 -38.72821 -37.21603 -36.53273 -35.10805 -34.32192 -32.78955 -32.20538 -28.98983 -28.47603 -27.79997 -26.86223 -25.70971 -24.20407 -23.26335 -22.62070 -21.24488 -20.97219 -20.20341 -19.58892 -18.91417 -18.32131 -17.80020 -17.51865 -17.32833 -16.89252 -16.45278 -15.98992 -15.87230 -15.69276 -15.52386 -15.36384 -15.02599 -14.95839 -14.81386 -14.38111 -14.08984 -13.88459 -13.71045 -13.64562 -13.42580 -13.10720 -13.04275 -12.86405 -12.62182 -12.58240 -12.50074 -12.28912 -12.13530 -12.10514 -12.03570 -11.92832 -11.56888 -11.46627 -11.24410 -10.98988 -10.76475 -10.43280 -10.14662 -9.69733 -9.32396 -8.36670 -6.37299 1.07372 1.27446 1.34226 1.40060 1.61526 2.01886 2.09820 2.26825 2.55038 2.83228 3.00599 3.40222 3.57801 3.68797 3.81501 3.92926 3.97369 4.09630 4.18410 4.23756 4.26181 4.34108 4.41269 4.44550 4.49248 4.53829 4.55611 4.61084 4.68102 4.75922 4.79621 4.84510 4.86591 4.92388 4.97239 5.05613 5.09396 5.22436 5.25412 5.46133 5.50102 5.51710 5.58714 5.66357 5.71610 5.80411 5.97349 6.25738 6.67537 6.97793 6.98350 7.28790 7.53857 8.78155 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014933 B = 0.003115 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.593335 B = 8985.939231 C = 9199.263119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.117 3.883 3 C -0.174 4.174 4 C 0.498 3.502 5 O -0.547 6.547 6 O -0.494 6.494 7 N -0.505 5.505 8 C 0.037 3.963 9 C 0.121 3.879 10 N -0.628 5.628 11 C 0.699 3.301 12 O -0.639 6.639 13 N -0.723 5.723 14 C 0.178 3.822 15 C -0.042 4.042 16 C -0.475 4.475 17 H 0.048 0.952 18 C 0.033 3.967 19 N -0.938 5.938 20 Si 0.932 3.068 21 H -0.297 1.297 22 H -0.299 1.299 23 H -0.236 1.236 24 C -0.185 4.185 25 C -0.150 4.150 26 C 0.134 3.866 27 C 0.039 3.961 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.044 0.956 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.423 0.577 35 H 0.026 0.974 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.082 0.918 39 H 0.406 0.594 40 H 0.058 0.942 41 H 0.025 0.975 42 H 0.265 0.735 43 H 0.093 0.907 44 H 0.082 0.918 45 H 0.087 0.913 46 H 0.102 0.898 47 H 0.093 0.907 48 H 0.082 0.918 49 H 0.125 0.875 50 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.933 -7.614 9.537 25.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.026 3.974 3 C -0.233 4.233 4 C 0.340 3.660 5 O -0.437 6.437 6 O -0.306 6.306 7 N -0.231 5.231 8 C -0.092 4.092 9 C -0.002 4.002 10 N -0.366 5.366 11 C 0.400 3.600 12 O -0.522 6.522 13 N -0.379 5.379 14 C 0.054 3.946 15 C -0.043 4.043 16 C -0.513 4.513 17 H 0.066 0.934 18 C -0.165 4.165 19 N -0.577 5.577 20 Si 0.762 3.238 21 H -0.225 1.225 22 H -0.228 1.228 23 H -0.159 1.159 24 C -0.223 4.223 25 C -0.187 4.187 26 C 0.012 3.988 27 C -0.089 4.089 28 H 0.092 0.908 29 H 0.112 0.888 30 H 0.101 0.899 31 H 0.063 0.937 32 H 0.105 0.895 33 H 0.095 0.905 34 H 0.285 0.715 35 H 0.044 0.956 36 H 0.113 0.887 37 H 0.119 0.881 38 H 0.100 0.900 39 H 0.245 0.755 40 H 0.077 0.923 41 H 0.042 0.958 42 H 0.074 0.926 43 H 0.111 0.889 44 H 0.100 0.900 45 H 0.106 0.894 46 H 0.120 0.880 47 H 0.111 0.889 48 H 0.100 0.900 49 H 0.142 0.858 50 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -22.392 -7.221 8.730 25.095 hybrid contribution 1.221 1.480 0.528 1.990 sum -21.171 -5.741 9.258 23.809 Atomic orbital electron populations 1.21920 0.88300 1.04715 1.04394 1.21056 0.99170 0.91150 0.85990 1.22391 1.01214 0.95275 1.04383 1.23347 0.72593 0.81197 0.88832 1.90740 1.47419 1.68386 1.37190 1.84626 1.78477 1.21033 1.46419 1.62273 1.11209 1.48767 1.00823 1.22571 0.88109 0.98841 0.99710 1.21802 0.99046 0.97981 0.81359 1.47369 1.09234 1.66741 1.13264 1.16090 0.81426 0.79040 0.83411 1.90834 1.76553 1.50376 1.34436 1.45192 1.08463 1.67503 1.16752 1.21051 0.89126 0.97869 0.86560 1.19400 0.92378 0.91217 1.01297 1.20461 1.24633 0.97535 1.08667 0.93416 1.25541 0.94932 0.97783 0.98280 1.70005 1.32098 1.12034 1.43560 0.86157 0.77059 0.78970 0.81589 1.22528 1.22759 1.15940 1.23133 1.00372 1.05848 0.92989 1.22776 1.02318 0.94212 0.99431 1.21674 0.78460 1.00617 0.98083 1.22711 1.03107 0.94878 0.88174 0.90828 0.88815 0.89897 0.93680 0.89494 0.90486 0.71542 0.95552 0.88677 0.88062 0.90032 0.75520 0.92336 0.95768 0.92564 0.88861 0.89951 0.89433 0.87959 0.88866 0.89994 0.85762 0.94904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.31 71.98 0.60 -0.79 16 2 C 0.12 1.83 0.67 2.78 0.00 1.83 16 3 C -0.17 -3.06 7.29 71.98 0.52 -2.53 16 4 C 0.50 8.97 5.70 71.23 0.41 9.37 16 5 O -0.55 -13.35 16.84 21.96 0.37 -12.98 16 6 O -0.49 -6.41 12.11 -51.42 -0.62 -7.03 16 7 N -0.50 -8.38 4.26 -849.96 -3.62 -12.00 16 8 C 0.04 0.73 4.84 86.38 0.42 1.15 16 9 C 0.12 2.57 6.55 86.35 0.57 3.14 16 10 N -0.63 -16.93 3.01 -835.91 -2.52 -19.44 16 11 C 0.70 25.72 8.31 179.05 1.49 27.21 16 12 O -0.64 -28.44 15.80 -3.99 -0.06 -28.50 16 13 N -0.72 -26.97 5.43 -478.52 -2.60 -29.57 16 14 C 0.18 7.60 4.32 86.38 0.37 7.97 16 15 C -0.04 -1.79 0.95 -52.93 -0.05 -1.84 16 16 C -0.48 -25.39 9.51 25.60 0.24 -25.15 16 17 H 0.05 2.78 8.06 -2.91 -0.02 2.76 16 18 C 0.03 1.90 5.47 84.65 0.46 2.36 16 19 N -0.94 -57.35 13.96 21.45 0.30 -57.05 16 20 Si 0.93 46.83 24.74 68.60 1.70 48.53 16 21 H -0.30 -15.65 7.11 99.48 0.71 -14.94 16 22 H -0.30 -14.94 7.11 99.48 0.71 -14.23 16 23 H -0.24 -10.90 5.91 99.48 0.59 -10.31 16 24 C -0.19 -7.01 9.88 30.59 0.30 -6.71 16 25 C -0.15 -5.20 9.92 30.60 0.30 -4.90 16 26 C 0.13 2.85 6.61 86.35 0.57 3.42 16 27 C 0.04 0.65 4.72 86.39 0.41 1.06 16 28 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.09 0.67 6.32 -2.39 -0.02 0.65 16 30 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.04 0.98 6.75 -2.39 -0.02 0.96 16 32 H 0.09 1.33 6.53 -2.39 -0.02 1.31 16 33 H 0.08 1.35 7.88 -2.39 -0.02 1.33 16 34 H 0.42 2.17 9.10 -74.06 -0.67 1.50 16 35 H 0.03 0.65 6.86 -2.39 -0.02 0.63 16 36 H 0.10 1.75 5.94 -2.39 -0.01 1.74 16 37 H 0.10 1.75 8.14 -2.38 -0.02 1.74 16 38 H 0.08 1.84 5.72 -2.39 -0.01 1.83 16 39 H 0.41 13.63 6.01 -92.71 -0.56 13.07 16 40 H 0.06 2.39 7.95 -2.39 -0.02 2.37 16 41 H 0.02 1.19 2.91 -2.38 -0.01 1.19 16 42 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 43 H 0.09 3.14 8.09 -2.39 -0.02 3.12 16 44 H 0.08 3.25 8.14 -2.38 -0.02 3.23 16 45 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 46 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 47 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 48 H 0.08 2.05 7.04 -2.38 -0.02 2.04 16 49 H 0.12 1.30 6.04 -2.39 -0.01 1.29 16 50 H 0.03 0.67 6.69 -2.39 -0.02 0.65 16 Total: -1.00 -76.04 382.50 -0.80 -76.84 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: -0.36 Total: 25.61 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: 6.62 Total: 15.60 kcal Atomic # 7 Polarization: -109.63 SS G_CDS: -8.43 Total: -118.06 kcal Atomic # 8 Polarization: -48.20 SS G_CDS: -0.32 Total: -48.52 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 1.70 Total: 48.53 kcal Total: -76.04 -0.80 -76.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603260320.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.719 kcal (2) G-P(sol) polarization free energy of solvation -76.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds