Wall clock time and date at job start Tue Mar 31 2020 22:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99755 * 2 1 4 4 C 1.50703 * 109.47109 * 66.04401 * 3 2 1 5 5 O 1.21296 * 119.99996 * 0.02562 * 4 3 2 6 6 N 1.34776 * 119.99978 * 180.02562 * 4 3 2 7 7 C 1.37099 * 119.99848 * 180.02562 * 6 4 3 8 8 H 1.07998 * 120.00405 * 359.97438 * 7 6 4 9 9 C 1.38953 * 119.99358 * 179.97438 * 7 6 4 10 10 N 1.31411 * 120.00464 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99431 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47204 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.46979 * 120.00140 * 11 9 7 14 14 H 1.48498 * 109.47371 * 240.00040 * 11 9 7 15 15 C 1.46893 * 111.00360 * 236.04616 * 2 1 3 16 16 H 1.09002 * 115.51759 * 153.53171 * 15 2 1 17 17 C 1.53005 * 117.44198 * 8.19312 * 15 2 1 18 18 H 1.08998 * 119.53575 * 4.11551 * 17 15 2 19 19 C 1.54390 * 118.12085 * 160.81065 * 17 15 2 20 20 N 1.48141 * 104.61761 * 39.45723 * 19 17 15 21 21 C 1.34774 * 127.83603 * 219.58240 * 20 19 17 22 22 O 1.21505 * 120.00516 * 179.97438 * 21 20 19 23 23 O 1.34641 * 119.99865 * 0.02562 * 21 20 19 24 24 C 1.45204 * 116.99986 * 179.97438 * 23 21 20 25 25 C 1.52998 * 109.47036 * 60.00085 * 24 23 21 26 26 C 1.53001 * 109.47273 * 180.02562 * 24 23 21 27 27 C 1.53003 * 109.47205 * 299.99987 * 24 23 21 28 28 C 1.48147 * 104.32791 * 39.58588 * 20 19 17 29 29 C 1.53001 * 117.44502 * 298.95340 * 15 2 1 30 30 H 1.09002 * 119.53453 * 354.28330 * 29 15 2 31 31 H 1.08995 * 109.47046 * 60.00231 * 1 2 3 32 32 H 1.09008 * 109.46903 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47457 * 299.99830 * 1 2 3 34 34 H 1.08992 * 109.47459 * 186.04319 * 3 2 1 35 35 H 1.09004 * 109.47040 * 306.04470 * 3 2 1 36 36 H 0.97002 * 119.99767 * 359.97438 * 6 4 3 37 37 H 0.96997 * 119.99770 * 179.97438 * 10 9 7 38 38 H 1.08993 * 110.40471 * 280.66448 * 19 17 15 39 39 H 1.09007 * 110.40299 * 158.24228 * 19 17 15 40 40 H 1.08999 * 109.47007 * 59.99920 * 25 24 23 41 41 H 1.09004 * 109.46914 * 179.97438 * 25 24 23 42 42 H 1.08999 * 109.47529 * 299.99862 * 25 24 23 43 43 H 1.09002 * 109.46929 * 59.99631 * 26 24 23 44 44 H 1.08996 * 109.47647 * 179.97438 * 26 24 23 45 45 H 1.08999 * 109.46931 * 300.00178 * 26 24 23 46 46 H 1.09005 * 109.46914 * 59.99697 * 27 24 23 47 47 H 1.09001 * 109.46985 * 179.97438 * 27 24 23 48 48 H 1.08997 * 109.47438 * 300.00189 * 27 24 23 49 49 H 1.09001 * 110.40463 * 201.63091 * 28 20 19 50 50 H 1.08999 * 110.50519 * 79.24909 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 1.2984 5 8 1.0053 1.4453 2.1412 6 7 2.0178 3.3203 1.5233 7 6 1.6920 3.9348 2.7048 8 1 1.1297 3.3989 3.4551 9 6 2.0854 5.2472 2.9367 10 7 2.7700 5.8991 2.0239 11 14 1.6409 6.0847 4.5462 12 1 0.8737 5.1420 5.3994 13 1 2.8825 6.4919 5.2517 14 1 0.8135 7.2859 4.2672 15 6 1.9955 -0.7659 -1.1375 16 1 2.9859 -0.4708 -1.4842 17 6 0.9935 -1.2421 -2.1912 18 1 -0.0530 -0.9487 -2.1089 19 6 1.5332 -1.6361 -3.5830 20 7 2.8008 -2.3503 -3.3041 21 6 3.9597 -2.2753 -3.9879 22 8 4.9196 -2.9289 -3.6304 23 8 4.0543 -1.4752 -5.0666 24 6 5.3329 -1.4437 -5.7540 25 6 5.6788 -2.8483 -6.2523 26 6 5.2487 -0.4860 -6.9442 27 6 6.4189 -0.9631 -4.7892 28 6 2.5054 -3.1658 -2.1030 29 6 1.6346 -2.2507 -1.2154 30 1 1.0883 -2.7147 -0.3942 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0278 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 3.0796 1.3446 -0.1082 35 1 1.5610 1.9274 -0.8310 36 1 2.5232 3.8015 0.8495 37 1 3.0442 6.8153 2.1857 38 1 1.7224 -0.7461 -4.1831 39 1 0.8292 -2.2954 -4.0909 40 1 4.9051 -3.1906 -6.9396 41 1 6.6384 -2.8245 -6.7687 42 1 5.7389 -3.5302 -5.4042 43 1 5.0025 0.5146 -6.5888 44 1 6.2087 -0.4620 -7.4600 45 1 4.4750 -0.8280 -7.6316 46 1 6.4790 -1.6450 -3.9410 47 1 7.3788 -0.9399 -5.3051 48 1 6.1725 0.0376 -4.4342 49 1 3.4283 -3.4298 -1.5866 50 1 1.9541 -4.0649 -2.3781 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656552950.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:25 Heat of formation + Delta-G solvation = -58.302415 kcal Electronic energy + Delta-G solvation = -30215.440471 eV Core-core repulsion = 26051.835598 eV Total energy + Delta-G solvation = -4163.604874 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.20031 -40.08514 -38.37170 -37.10906 -35.79940 -34.31876 -33.87050 -32.31520 -31.24096 -28.82127 -27.95932 -27.67954 -27.61570 -26.70736 -25.16316 -23.60437 -22.12440 -20.45789 -20.03390 -19.25534 -19.17045 -18.15788 -17.85381 -17.03082 -16.76727 -16.22436 -15.53309 -15.31412 -15.01037 -14.78508 -14.61245 -14.30980 -14.17321 -13.83176 -13.74060 -13.64268 -13.23519 -13.00222 -12.76408 -12.54860 -12.50869 -12.43942 -12.16916 -12.14650 -12.05286 -11.71655 -11.69172 -11.53661 -11.51908 -11.29674 -11.24551 -10.94640 -10.71213 -10.60217 -10.34619 -10.23796 -10.23191 -9.83579 -9.49857 -9.11681 -8.41560 -7.98446 -7.82193 -6.42478 -3.83276 1.81007 2.64777 3.15843 3.26512 3.32978 3.38747 3.61037 3.72858 3.89112 4.19496 4.43219 4.45619 4.49263 4.63334 4.65250 4.78521 4.83407 5.06083 5.15295 5.19400 5.21698 5.24537 5.26016 5.28194 5.40581 5.41429 5.47418 5.51399 5.54679 5.60204 5.60553 5.65810 5.69379 5.73814 5.84537 5.95510 5.96506 6.01033 6.05643 6.11711 6.24758 6.26590 6.49443 7.20038 7.25181 7.33305 7.54862 8.05488 8.12528 8.60575 9.17278 9.53231 10.04703 10.75315 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014461 B = 0.002350 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.811666 B =11911.230116 C =13243.652456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.482 5.482 3 C 0.047 3.953 4 C 0.444 3.556 5 O -0.578 6.578 6 N -0.563 5.563 7 C -0.298 4.298 8 H 0.104 0.896 9 C 0.022 3.978 10 N -0.901 5.901 11 Si 0.929 3.071 12 H -0.268 1.268 13 H -0.281 1.281 14 H -0.282 1.282 15 C 0.072 3.928 16 H 0.111 0.889 17 C -0.218 4.218 18 H 0.132 0.868 19 C 0.137 3.863 20 N -0.613 5.613 21 C 0.676 3.324 22 O -0.566 6.566 23 O -0.361 6.361 24 C 0.136 3.864 25 C -0.183 4.183 26 C -0.141 4.141 27 C -0.185 4.185 28 C 0.156 3.844 29 C -0.169 4.169 30 H 0.133 0.867 31 H 0.022 0.978 32 H 0.061 0.939 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.051 0.949 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.058 0.942 41 H 0.070 0.930 42 H 0.087 0.913 43 H 0.068 0.932 44 H 0.080 0.920 45 H 0.065 0.935 46 H 0.088 0.912 47 H 0.070 0.930 48 H 0.062 0.938 49 H 0.090 0.910 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.740 -15.045 -19.407 24.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.203 5.203 3 C -0.084 4.084 4 C 0.230 3.770 5 O -0.462 6.462 6 N -0.200 5.200 7 C -0.427 4.427 8 H 0.122 0.878 9 C -0.180 4.180 10 N -0.543 5.543 11 Si 0.756 3.244 12 H -0.192 1.192 13 H -0.207 1.207 14 H -0.208 1.208 15 C -0.038 4.038 16 H 0.129 0.871 17 C -0.239 4.239 18 H 0.150 0.850 19 C 0.014 3.986 20 N -0.355 5.355 21 C 0.432 3.568 22 O -0.456 6.456 23 O -0.276 6.276 24 C 0.099 3.901 25 C -0.240 4.240 26 C -0.198 4.198 27 C -0.242 4.242 28 C 0.034 3.966 29 C -0.189 4.189 30 H 0.151 0.849 31 H 0.040 0.960 32 H 0.080 0.920 33 H 0.117 0.883 34 H 0.107 0.893 35 H 0.069 0.931 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.106 0.894 43 H 0.087 0.913 44 H 0.099 0.901 45 H 0.085 0.915 46 H 0.106 0.894 47 H 0.089 0.911 48 H 0.081 0.919 49 H 0.109 0.891 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.009 -15.628 -18.391 24.217 hybrid contribution -0.131 1.178 -0.444 1.266 sum 1.879 -14.450 -18.835 23.813 Atomic orbital electron populations 1.22659 0.86415 1.01570 1.02329 1.61383 1.08806 1.12949 1.37115 1.21905 1.00792 0.88306 0.97362 1.19671 0.85551 0.82972 0.88848 1.90485 1.44029 1.64623 1.47092 1.41861 1.49349 1.10696 1.18074 1.19747 1.32884 0.95421 0.94683 0.87826 1.25269 0.96806 0.96668 0.99238 1.69620 1.38053 1.12202 1.34398 0.85803 0.78224 0.79009 0.81325 1.19206 1.20738 1.20776 1.22583 0.97569 0.93532 0.90145 0.87090 1.24379 1.01252 1.07178 0.91085 0.85015 1.21843 0.84273 0.96688 0.95791 1.47484 1.09758 1.47738 1.30505 1.17310 0.81784 0.78647 0.79044 1.90909 1.36003 1.48377 1.70277 1.86308 1.39042 1.62220 1.40038 1.22095 0.79809 0.96677 0.91479 1.22513 1.01985 0.96502 1.02978 1.21861 1.03073 0.99078 0.95769 1.22530 0.97888 1.02683 1.01104 1.21777 0.99943 0.92302 0.82560 1.23707 1.03477 0.91290 1.00393 0.84911 0.95959 0.92032 0.88264 0.89322 0.93071 0.77471 0.91912 0.89657 0.90216 0.92281 0.91109 0.89420 0.91302 0.90090 0.91544 0.89363 0.91100 0.91926 0.89145 0.89828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 7.87 60.07 0.47 0.74 16 2 N -0.48 -7.94 4.71 -236.32 -1.11 -9.06 16 3 C 0.05 0.85 5.42 -4.97 -0.03 0.82 16 4 C 0.44 10.41 7.51 -10.98 -0.08 10.33 16 5 O -0.58 -15.38 13.89 5.54 0.08 -15.30 16 6 N -0.56 -14.22 5.29 -10.96 -0.06 -14.27 16 7 C -0.30 -8.26 9.68 -14.93 -0.14 -8.40 16 8 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 9 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 10 N -0.90 -24.48 13.05 55.50 0.72 -23.76 16 11 Si 0.93 20.99 29.55 -169.99 -5.02 15.97 16 12 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 13 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 14 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 15 C 0.07 0.95 5.46 -67.71 -0.37 0.58 16 16 H 0.11 1.56 7.79 -51.93 -0.40 1.15 16 17 C -0.22 -2.22 6.01 -89.21 -0.54 -2.76 16 18 H 0.13 1.28 6.14 -51.93 -0.32 0.96 16 19 C 0.14 1.26 6.97 -2.41 -0.02 1.24 16 20 N -0.61 -6.78 2.90 -175.08 -0.51 -7.29 16 21 C 0.68 8.65 8.01 54.05 0.43 9.08 16 22 O -0.57 -8.32 12.15 -19.28 -0.23 -8.55 16 23 O -0.36 -4.21 9.41 -40.33 -0.38 -4.59 16 24 C 0.14 1.30 1.13 -90.62 -0.10 1.20 16 25 C -0.18 -1.63 8.37 37.16 0.31 -1.32 16 26 C -0.14 -0.99 8.85 37.16 0.33 -0.66 16 27 C -0.18 -1.84 8.37 37.16 0.31 -1.52 16 28 C 0.16 1.55 6.96 -2.41 -0.02 1.53 16 29 C -0.17 -1.80 6.50 -89.22 -0.58 -2.38 16 30 H 0.13 1.38 7.85 -51.93 -0.41 0.98 16 31 H 0.02 0.31 7.18 -51.93 -0.37 -0.07 16 32 H 0.06 0.80 6.90 -51.92 -0.36 0.44 16 33 H 0.10 1.89 5.88 -51.93 -0.31 1.58 16 34 H 0.09 1.49 7.96 -51.93 -0.41 1.07 16 35 H 0.05 0.84 8.12 -51.93 -0.42 0.42 16 36 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 37 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 38 H 0.09 0.80 7.87 -51.93 -0.41 0.39 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.09 0.98 5.88 -51.93 -0.31 0.68 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.09 1.09 5.88 -51.93 -0.31 0.78 16 47 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 48 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.09 0.99 7.88 -51.93 -0.41 0.58 16 50 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 396.84 15.07 5.98 5.98 Total: -1.00 -32.18 396.84 -8.72 -40.89 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -8.07 Total: 11.01 kcal Atomic # 6 Polarization: 9.09 SS G_CDS: -0.11 Total: 8.97 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: -0.95 Total: -54.38 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -0.54 Total: -28.44 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.18 -8.72 -40.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656552950.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.411 kcal (2) G-P(sol) polarization free energy of solvation -32.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds