Wall clock time and date at job start Tue Mar 31 2020 23:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47449 * 2 1 4 4 C 1.52998 * 109.47160 * 239.99935 * 2 1 3 5 5 O 1.45208 * 109.47115 * 119.99939 * 2 1 3 6 6 C 1.34635 * 116.99892 * 59.99608 * 5 2 1 7 7 O 1.21509 * 119.99733 * 0.02562 * 6 5 2 8 8 N 1.34779 * 120.00033 * 179.97438 * 6 5 2 9 9 C 1.46497 * 119.99802 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47188 * 60.00459 * 9 8 6 11 11 C 1.52992 * 109.47081 * 300.00003 * 9 8 6 12 12 C 1.50706 * 109.46582 * 180.02562 * 9 8 6 13 13 C 1.41383 * 126.79734 * 179.70827 * 12 9 8 14 14 C 1.35457 * 103.98154 * 179.88756 * 13 12 9 15 15 C 1.50694 * 126.77484 * 180.14086 * 14 13 12 16 16 N 1.46903 * 109.47374 * 90.29878 * 15 14 13 17 17 C 1.46897 * 111.00331 * 179.97438 * 16 15 14 18 18 C 1.50699 * 109.47159 * 180.02562 * 17 16 15 19 19 H 1.07997 * 120.00431 * 0.02562 * 18 17 16 20 20 C 1.37881 * 119.99637 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00349 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99668 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47026 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47005 * 119.99757 * 22 20 18 25 25 H 1.48494 * 109.47077 * 239.99978 * 22 20 18 26 26 O 1.34039 * 106.44432 * 0.37040 * 14 13 12 27 27 N 1.20919 * 111.56935 * 359.74837 * 26 14 13 28 28 H 1.09006 * 109.47049 * 300.00433 * 1 2 3 29 29 H 1.08997 * 109.46837 * 59.99794 * 1 2 3 30 30 H 1.09001 * 109.47372 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47162 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47274 * 300.00499 * 3 2 1 33 33 H 1.09002 * 109.46883 * 59.99642 * 3 2 1 34 34 H 1.09001 * 109.47069 * 299.99741 * 4 2 1 35 35 H 1.08996 * 109.47281 * 59.99903 * 4 2 1 36 36 H 1.09000 * 109.47197 * 180.02562 * 4 2 1 37 37 H 0.97004 * 119.99467 * 0.02562 * 8 6 5 38 38 H 1.09002 * 109.47153 * 299.99573 * 10 9 8 39 39 H 1.09001 * 109.46832 * 179.97438 * 10 9 8 40 40 H 1.09004 * 109.47261 * 59.99745 * 10 9 8 41 41 H 1.09001 * 109.47066 * 180.02562 * 11 9 8 42 42 H 1.08996 * 109.47747 * 300.00111 * 11 9 8 43 43 H 1.09002 * 109.47103 * 60.00523 * 11 9 8 44 44 H 1.08001 * 128.00983 * 0.02562 * 13 12 9 45 45 H 1.08998 * 109.47518 * 210.29959 * 15 14 13 46 46 H 1.09002 * 109.47488 * 330.30111 * 15 14 13 47 47 H 1.00895 * 110.99882 * 303.95467 * 16 15 14 48 48 H 1.08998 * 109.47438 * 300.00721 * 17 16 15 49 49 H 1.09005 * 109.46769 * 60.00063 * 17 16 15 50 50 H 0.97000 * 120.00046 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9515 -2.5096 0.5037 8 7 2.0680 -2.6657 2.4168 9 6 1.6747 -4.0671 2.5827 10 6 2.1891 -4.8851 1.3965 11 6 0.1492 -4.1646 2.6462 12 6 2.2657 -4.6068 3.8597 13 6 2.1139 -5.9137 4.3771 14 6 2.8302 -5.8959 5.5266 15 6 3.0171 -7.0388 6.4909 16 7 4.2093 -7.8090 6.1122 17 6 4.4239 -8.9336 7.0326 18 6 5.6531 -9.6982 6.6137 19 1 6.2186 -9.3803 5.7503 20 6 6.0556 -10.8037 7.3327 21 7 5.3667 -11.1911 8.3838 22 14 7.5797 -11.7510 6.8138 23 1 8.1713 -11.1154 5.6091 24 1 8.5719 -11.7359 7.9185 25 1 7.2078 -13.1543 6.5015 26 8 3.3356 -4.6597 5.6396 27 7 3.0124 -3.9604 4.7076 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2492 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7217 -1.2490 37 1 2.6276 -2.2368 3.0829 38 1 1.7613 -4.4946 0.4731 39 1 1.8968 -5.9279 1.5202 40 1 3.2760 -4.8156 1.3512 41 1 -0.1434 -5.2073 2.7702 42 1 -0.2173 -3.5819 3.4913 43 1 -0.2786 -3.7741 1.7228 44 1 1.5576 -6.7365 3.9528 45 1 3.1437 -6.6460 7.4997 46 1 2.1412 -7.6868 6.4606 47 1 4.1444 -8.1298 5.1578 48 1 4.5603 -8.5536 8.0451 49 1 3.5577 -9.5948 7.0064 50 1 5.6502 -11.9686 8.8898 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001659028895.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:43 Heat of formation + Delta-G solvation = -43.605287 kcal Electronic energy + Delta-G solvation = -29680.090592 eV Core-core repulsion = 25517.123033 eV Total energy + Delta-G solvation = -4162.967558 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -45.98402 -41.98831 -39.48385 -37.46263 -37.15414 -35.27665 -34.87224 -34.15950 -32.73757 -32.14105 -29.17420 -28.40937 -28.29004 -28.27874 -26.23719 -25.61134 -23.77086 -23.53192 -22.87640 -21.04373 -20.57546 -19.42988 -18.72897 -18.58478 -17.91158 -17.50563 -17.19798 -16.84962 -16.56092 -16.13337 -15.79580 -15.41029 -15.32853 -15.13608 -14.93603 -14.81287 -14.63163 -14.48700 -14.04725 -13.44372 -13.39389 -13.35528 -13.27867 -13.05602 -13.01630 -12.87163 -12.80827 -12.78747 -12.69907 -12.62394 -12.55434 -12.30857 -12.30357 -12.14087 -12.04583 -11.35659 -11.33340 -11.29241 -10.93032 -10.66166 -10.48761 -10.30249 -9.19484 -8.21550 -6.31350 0.39499 1.05248 1.14208 1.42678 1.44424 1.57066 1.72037 2.03757 2.41893 2.75179 3.01958 3.12865 3.43943 3.67985 3.75952 3.81291 3.83528 3.95766 3.96198 4.05986 4.20212 4.31110 4.46124 4.55522 4.59372 4.64105 4.68389 4.69561 4.74707 4.78356 4.79401 4.79964 4.87489 4.89228 4.99766 5.07971 5.10103 5.18103 5.22085 5.26269 5.27822 5.30691 5.37812 5.52862 5.61369 6.00843 6.32438 6.37497 6.64771 6.87728 7.14754 7.29774 7.39132 8.89673 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024553 B = 0.001830 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.102244 B =15294.337491 C =15585.034306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.124 3.876 3 C -0.138 4.138 4 C -0.179 4.179 5 O -0.375 6.375 6 C 0.655 3.345 7 O -0.572 6.572 8 N -0.706 5.706 9 C 0.278 3.722 10 C -0.157 4.157 11 C -0.155 4.155 12 C 0.017 3.983 13 C -0.210 4.210 14 C -0.003 4.003 15 C 0.134 3.866 16 N -0.689 5.689 17 C 0.208 3.792 18 C -0.535 4.535 19 H 0.062 0.938 20 C 0.005 3.995 21 N -0.930 5.930 22 Si 0.968 3.032 23 H -0.266 1.266 24 H -0.280 1.280 25 H -0.277 1.277 26 O 0.089 5.911 27 N -0.382 5.382 28 H 0.058 0.942 29 H 0.091 0.909 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.104 0.896 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.056 0.944 37 H 0.410 0.590 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.049 0.951 41 H 0.092 0.908 42 H 0.054 0.946 43 H 0.084 0.916 44 H 0.200 0.800 45 H 0.089 0.911 46 H 0.081 0.919 47 H 0.341 0.659 48 H 0.008 0.992 49 H -0.023 1.023 50 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.638 21.608 -17.893 30.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.088 3.912 3 C -0.195 4.195 4 C -0.236 4.236 5 O -0.290 6.290 6 C 0.409 3.591 7 O -0.463 6.463 8 N -0.365 5.365 9 C 0.192 3.808 10 C -0.216 4.216 11 C -0.214 4.214 12 C -0.143 4.143 13 C -0.233 4.233 14 C -0.067 4.067 15 C 0.004 3.996 16 N -0.321 5.321 17 C 0.081 3.919 18 C -0.574 4.574 19 H 0.080 0.920 20 C -0.194 4.194 21 N -0.570 5.570 22 Si 0.793 3.207 23 H -0.190 1.190 24 H -0.206 1.206 25 H -0.203 1.203 26 O 0.025 5.975 27 N -0.088 5.088 28 H 0.077 0.923 29 H 0.109 0.891 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.122 0.878 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.110 0.890 36 H 0.076 0.924 37 H 0.246 0.754 38 H 0.103 0.897 39 H 0.110 0.890 40 H 0.068 0.932 41 H 0.111 0.889 42 H 0.073 0.927 43 H 0.102 0.898 44 H 0.217 0.783 45 H 0.107 0.893 46 H 0.098 0.902 47 H 0.158 0.842 48 H 0.026 0.974 49 H -0.005 1.005 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.072 22.969 -17.798 31.466 hybrid contribution 0.087 -1.726 0.163 1.736 sum -11.984 21.243 -17.635 30.098 Atomic orbital electron populations 1.22465 0.93579 1.04016 1.03465 1.22440 0.94848 0.92516 0.81388 1.21898 1.02280 0.91005 1.04288 1.22471 1.01389 1.02527 0.97232 1.86338 1.71688 1.23231 1.47693 1.17998 0.78563 0.80714 0.81821 1.90828 1.41542 1.70379 1.43533 1.44874 1.55594 1.11991 1.24086 1.18529 0.95238 0.78293 0.88695 1.22251 1.00985 1.00903 0.97457 1.22234 0.91245 1.04359 1.03523 1.23545 0.99321 0.93316 0.98098 1.22542 1.06464 0.98396 0.95868 1.24556 0.96071 0.87339 0.98705 1.20389 0.93978 0.89018 0.96174 1.60524 1.37201 1.27265 1.07094 1.19253 0.94685 0.86318 0.91628 1.21545 1.11372 1.11143 1.13323 0.91964 1.25851 1.00340 0.98273 0.94905 1.70065 1.41135 1.26691 1.19111 0.85349 0.78828 0.78157 0.78351 1.18971 1.20631 1.20260 1.84803 1.56640 1.19436 1.36634 1.73690 1.16598 1.19728 0.98762 0.92285 0.89050 0.91341 0.91563 0.87777 0.91430 0.91373 0.89022 0.92449 0.75399 0.89658 0.89002 0.93214 0.88900 0.92731 0.89751 0.78263 0.89263 0.90171 0.84181 0.97357 1.00523 0.92598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.64 8.37 71.98 0.60 -2.04 16 2 C 0.12 1.98 1.13 -10.79 -0.01 1.97 16 3 C -0.14 -1.47 8.85 71.98 0.64 -0.83 16 4 C -0.18 -2.75 8.37 71.98 0.60 -2.15 16 5 O -0.37 -8.05 9.94 -55.45 -0.55 -8.60 16 6 C 0.66 15.11 7.48 129.79 0.97 16.08 16 7 O -0.57 -13.81 8.09 19.81 0.16 -13.65 16 8 N -0.71 -15.95 5.10 -553.77 -2.83 -18.78 16 9 C 0.28 5.90 0.99 2.86 0.00 5.90 16 10 C -0.16 -3.16 8.31 71.98 0.60 -2.56 16 11 C -0.16 -2.87 8.30 71.98 0.60 -2.27 16 12 C 0.02 0.40 5.76 43.58 0.25 0.66 16 13 C -0.21 -4.81 10.68 22.40 0.24 -4.57 16 14 C 0.00 -0.08 7.00 25.04 0.18 0.09 16 15 C 0.13 4.10 6.25 85.55 0.53 4.63 16 16 N -0.69 -27.12 6.48 -521.99 -3.38 -30.50 16 17 C 0.21 10.35 5.44 85.56 0.47 10.81 16 18 C -0.54 -29.32 9.32 25.60 0.24 -29.08 16 19 H 0.06 3.35 7.81 -2.91 -0.02 3.33 16 20 C 0.00 0.27 5.46 84.66 0.46 0.74 16 21 N -0.93 -54.06 13.29 21.45 0.28 -53.78 16 22 Si 0.97 43.24 29.54 68.60 2.03 45.26 16 23 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 24 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 25 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 26 O 0.09 2.73 11.20 71.65 0.80 3.53 16 27 N -0.38 -10.97 11.06 -49.57 -0.55 -11.52 16 28 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 29 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.07 1.33 5.88 -2.39 -0.01 1.31 16 31 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.07 1.36 5.88 -2.39 -0.01 1.35 16 35 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.41 9.55 7.82 -92.71 -0.73 8.83 16 38 H 0.08 1.82 6.16 -2.39 -0.01 1.80 16 39 H 0.09 1.50 8.07 -2.39 -0.02 1.48 16 40 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 41 H 0.09 1.35 8.06 -2.39 -0.02 1.33 16 42 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.08 1.70 6.17 -2.39 -0.01 1.68 16 44 H 0.20 3.30 8.06 -2.91 -0.02 3.28 16 45 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 46 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 47 H 0.34 12.59 8.72 -89.70 -0.78 11.81 16 48 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 49 H -0.02 -1.19 8.14 -2.38 -0.02 -1.21 16 50 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -64.38 404.50 1.78 -62.60 By element: Atomic # 1 Polarization: 28.60 SS G_CDS: -0.55 Total: 28.05 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: 6.37 Total: -2.62 kcal Atomic # 7 Polarization: -108.11 SS G_CDS: -6.47 Total: -114.58 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: 0.41 Total: -18.72 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -64.38 1.78 -62.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001659028895.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.994 kcal (2) G-P(sol) polarization free energy of solvation -64.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds