Wall clock time and date at job start Tue Mar 31 2020 23:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46630 * 2 1 4 4 H 1.09001 * 110.43811 * 51.36884 * 3 2 1 5 5 C 1.54813 * 110.60435 * 288.74281 * 3 2 1 6 6 C 1.54996 * 102.08970 * 220.39103 * 5 3 2 7 7 O 1.44383 * 103.49460 * 37.02309 * 6 5 3 8 8 C 1.43744 * 106.97286 * 319.93851 * 7 6 5 9 9 H 1.09002 * 109.87705 * 267.08866 * 8 7 6 10 10 C 1.50701 * 110.00146 * 146.00773 * 8 7 6 11 11 O 1.21280 * 119.99782 * 342.68693 * 10 8 7 12 12 N 1.34773 * 119.99848 * 162.68903 * 10 8 7 13 13 C 1.47427 * 125.65210 * 4.71928 * 12 10 8 14 14 C 1.54907 * 104.83216 * 204.09246 * 13 12 10 15 15 C 1.55158 * 101.58215 * 322.98925 * 14 13 12 16 16 H 1.08996 * 110.71935 * 276.96253 * 15 14 13 17 17 N 1.46898 * 110.71901 * 153.86647 * 15 14 13 18 18 C 1.46900 * 110.99730 * 86.45435 * 17 15 14 19 19 C 1.50709 * 109.46700 * 179.97438 * 18 17 15 20 20 O 1.21285 * 119.99995 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99667 * 179.97438 * 19 18 17 22 22 C 1.37101 * 119.99822 * 180.02562 * 21 19 18 23 23 H 1.07996 * 119.99993 * 0.02562 * 22 21 19 24 24 C 1.38949 * 119.99737 * 179.97438 * 22 21 19 25 25 N 1.31407 * 120.00369 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99744 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.46903 * 90.00723 * 26 24 22 28 28 H 1.48499 * 109.47269 * 210.00446 * 26 24 22 29 29 H 1.48500 * 109.47551 * 330.01048 * 26 24 22 30 30 C 1.47023 * 125.64417 * 184.41033 * 12 10 8 31 31 H 1.09005 * 109.47176 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47508 * 299.99691 * 1 2 3 33 33 H 1.09001 * 109.47519 * 59.99884 * 1 2 3 34 34 H 1.08999 * 109.46721 * 240.00795 * 2 1 3 35 35 H 1.08995 * 109.46863 * 120.00337 * 2 1 3 36 36 H 1.08995 * 110.90270 * 338.58549 * 5 3 2 37 37 H 1.09000 * 110.90187 * 102.19240 * 5 3 2 38 38 H 1.09001 * 110.61246 * 155.52637 * 6 5 3 39 39 H 1.08997 * 110.61753 * 278.36236 * 6 5 3 40 40 H 1.09005 * 110.36109 * 322.93203 * 13 12 10 41 41 H 1.08998 * 110.36568 * 85.24938 * 13 12 10 42 42 H 1.09002 * 111.00473 * 81.06408 * 14 13 12 43 43 H 1.08998 * 111.00359 * 204.91483 * 14 13 12 44 44 H 1.00894 * 111.00048 * 322.49673 * 17 15 14 45 45 H 1.09002 * 109.47289 * 299.99495 * 18 17 15 46 46 H 1.09004 * 109.47543 * 60.00159 * 18 17 15 47 47 H 0.97002 * 120.00093 * 359.97438 * 21 19 18 48 48 H 0.97004 * 120.00237 * 179.97438 * 25 24 22 49 49 H 1.09006 * 109.88343 * 298.38939 * 30 12 10 50 50 H 1.09002 * 109.88469 * 59.56068 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5655 2.0139 0.7979 5 6 1.7824 2.1114 -1.3723 6 6 3.0884 2.9169 -1.5909 7 8 4.1109 2.0555 -1.0456 8 6 3.5730 1.4726 0.1532 9 1 3.8475 2.0797 1.0159 10 6 4.0984 0.0707 0.3253 11 8 4.5937 -0.5111 -0.6165 12 7 4.0179 -0.5364 1.5259 13 6 3.3562 0.0123 2.7236 14 6 4.0425 -0.6987 3.9166 15 6 4.2621 -2.1244 3.3450 16 1 3.3588 -2.7253 3.4498 17 7 5.3993 -2.7794 4.0050 18 6 4.9742 -3.4555 5.2379 19 6 6.1648 -4.1149 5.8853 20 8 7.2597 -4.0294 5.3705 21 7 6.0131 -4.7985 7.0368 22 6 7.0962 -5.3979 7.6260 23 1 8.0711 -5.3219 7.1676 24 6 6.9398 -6.1023 8.8135 25 7 5.7537 -6.1944 9.3715 26 14 8.4155 -6.9195 9.6159 27 1 9.0589 -5.9665 10.5557 28 1 7.9699 -8.1244 10.3607 29 1 9.3911 -7.3172 8.5693 30 6 4.5698 -1.8585 1.8561 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.8933 -0.5137 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 1.6529 1.3612 -2.1523 37 1 0.9191 2.7752 -1.3255 38 1 3.2591 3.0903 -2.6534 39 1 3.0512 3.8625 -1.0501 40 1 3.5122 1.0895 2.7832 41 1 2.2908 -0.2172 2.7071 42 1 4.9933 -0.2244 4.1596 43 1 3.3863 -0.7234 4.7866 44 1 6.1388 -2.1187 4.1914 45 1 4.5456 -2.7248 5.9239 46 1 4.2263 -4.2115 4.9985 47 1 5.1376 -4.8659 7.4491 48 1 5.6445 -6.6865 10.2003 49 1 4.0994 -2.6220 1.2364 50 1 5.6480 -1.8606 1.6962 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662503876.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:24 Heat of formation + Delta-G solvation = -108.107419 kcal Electronic energy + Delta-G solvation = -29938.746410 eV Core-core repulsion = 25772.981829 eV Total energy + Delta-G solvation = -4165.764581 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.15702 -39.37604 -38.29734 -37.45757 -35.32211 -34.62727 -33.80785 -31.32479 -31.02692 -30.68537 -29.89081 -28.68349 -26.19775 -24.56993 -23.84555 -23.35346 -23.00717 -21.40735 -20.79038 -19.33475 -19.22800 -17.94949 -17.59009 -17.15136 -16.70463 -16.21795 -15.95130 -15.48444 -15.20308 -14.89091 -14.78525 -14.53856 -14.31848 -14.00797 -13.86638 -13.71551 -13.65320 -13.31109 -12.96006 -12.79642 -12.61424 -12.49138 -12.39715 -12.14022 -12.03980 -11.73371 -11.64226 -11.56117 -11.49714 -11.41046 -11.15387 -11.07011 -11.03324 -10.90806 -10.41021 -10.40455 -10.23654 -9.68067 -9.53100 -8.84527 -8.51924 -8.12660 -7.98510 -6.43884 -3.84657 2.33583 2.54885 3.16704 3.25724 3.31973 3.58296 3.87437 3.89146 3.99108 4.06717 4.16993 4.20479 4.35614 4.45020 4.63676 4.69424 4.71860 4.81294 4.88032 4.93179 4.97850 5.04554 5.09043 5.14406 5.16289 5.22131 5.25043 5.28000 5.34873 5.40121 5.54614 5.57995 5.65484 5.69201 5.70716 5.73631 5.83137 5.88825 5.91040 5.93455 6.04174 6.23436 6.39025 7.11612 7.25704 7.53502 7.54405 7.97942 8.04028 8.58678 9.15855 9.51595 10.02911 10.73749 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.030392 B = 0.001849 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.065779 B =15138.018837 C =15582.919291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.135 4.135 3 C -0.109 4.109 4 H 0.093 0.907 5 C -0.148 4.148 6 C 0.044 3.956 7 O -0.348 6.348 8 C 0.066 3.934 9 H 0.090 0.910 10 C 0.536 3.464 11 O -0.518 6.518 12 N -0.619 5.619 13 C 0.099 3.901 14 C -0.169 4.169 15 C 0.081 3.919 16 H 0.095 0.905 17 N -0.658 5.658 18 C 0.052 3.948 19 C 0.439 3.561 20 O -0.582 6.582 21 N -0.563 5.563 22 C -0.299 4.299 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.930 3.070 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.269 1.269 30 C 0.117 3.883 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.064 0.936 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.354 0.646 45 H 0.046 0.954 46 H 0.087 0.913 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.073 0.927 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.827 18.989 -15.153 28.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C -0.128 4.128 4 H 0.111 0.889 5 C -0.186 4.186 6 C -0.032 4.032 7 O -0.266 6.266 8 C 0.004 3.996 9 H 0.107 0.893 10 C 0.323 3.677 11 O -0.393 6.393 12 N -0.356 5.356 13 C -0.025 4.025 14 C -0.209 4.209 15 C -0.031 4.031 16 H 0.113 0.887 17 N -0.289 5.289 18 C -0.080 4.080 19 C 0.225 3.775 20 O -0.466 6.466 21 N -0.200 5.200 22 C -0.429 4.429 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.757 3.243 27 H -0.204 1.204 28 H -0.209 1.209 29 H -0.194 1.194 30 C -0.006 4.006 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.115 0.885 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.105 0.895 44 H 0.175 0.825 45 H 0.064 0.936 46 H 0.106 0.894 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.092 0.908 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.657 18.035 -16.397 28.442 hybrid contribution -0.283 0.397 1.572 1.645 sum -14.940 18.431 -14.826 27.977 Atomic orbital electron populations 1.21741 0.94978 1.02022 1.01770 1.21928 0.96743 0.94778 1.03820 1.22546 0.92877 0.98353 0.98984 0.88897 1.23248 0.98560 0.99940 0.96845 1.23631 0.86424 0.93165 1.00027 1.89004 1.37314 1.61310 1.38960 1.22711 0.93783 0.92522 0.90561 0.89284 1.19872 0.78983 0.87420 0.81380 1.90740 1.44093 1.65797 1.38644 1.48467 1.56841 1.20042 1.10270 1.22381 0.97059 0.98686 0.84350 1.23619 1.02135 0.97556 0.97576 1.22607 0.95033 0.92645 0.92799 0.88659 1.59951 1.08723 1.34436 1.25839 1.21688 0.97612 0.98190 0.90514 1.19791 0.89786 0.84718 0.83248 1.90537 1.26974 1.64636 1.64495 1.41857 1.11456 1.46214 1.20442 1.19707 0.90298 1.28289 1.04587 0.87899 1.25263 0.97956 0.97819 0.96912 1.69607 1.22132 1.42531 1.20041 0.85853 0.80805 0.78488 0.79126 1.20431 1.20913 1.19377 1.21909 1.00325 0.83261 0.95092 0.92412 0.92620 0.92666 0.91103 0.90310 0.89938 0.89764 0.88472 0.91809 0.90641 0.90725 0.90046 0.89457 0.82539 0.93634 0.89445 0.77463 0.91867 0.90819 0.90163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.80 37.16 0.36 -0.49 16 2 C -0.14 -1.03 4.17 -26.73 -0.11 -1.14 16 3 C -0.11 -0.73 2.89 -89.09 -0.26 -0.98 16 4 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 5 C -0.15 -0.89 6.09 -24.72 -0.15 -1.04 16 6 C 0.04 0.31 7.72 38.21 0.29 0.60 16 7 O -0.35 -4.04 10.80 -54.08 -0.58 -4.63 16 8 C 0.07 0.63 3.18 -27.30 -0.09 0.54 16 9 H 0.09 0.68 7.09 -51.93 -0.37 0.32 16 10 C 0.54 6.77 5.14 -10.99 -0.06 6.72 16 11 O -0.52 -8.94 16.95 -13.29 -0.23 -9.17 16 12 N -0.62 -6.55 2.50 -170.51 -0.43 -6.97 16 13 C 0.10 0.71 5.93 -2.53 -0.01 0.70 16 14 C -0.17 -1.42 6.63 -24.58 -0.16 -1.58 16 15 C 0.08 0.89 3.23 -65.87 -0.21 0.67 16 16 H 0.10 0.95 7.89 -51.93 -0.41 0.54 16 17 N -0.66 -9.90 5.91 -106.04 -0.63 -10.52 16 18 C 0.05 0.86 6.02 -4.97 -0.03 0.83 16 19 C 0.44 10.09 7.82 -10.98 -0.09 10.01 16 20 O -0.58 -15.65 15.78 5.55 0.09 -15.56 16 21 N -0.56 -13.97 5.29 -10.96 -0.06 -14.03 16 22 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 23 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -24.21 13.05 55.50 0.72 -23.48 16 26 Si 0.93 20.93 29.55 -169.99 -5.02 15.90 16 27 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 28 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 29 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 30 C 0.12 1.41 6.64 -3.06 -0.02 1.39 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.05 0.29 7.67 -51.93 -0.40 -0.11 16 34 H 0.07 0.72 7.72 -51.93 -0.40 0.31 16 35 H 0.08 0.64 4.21 -51.93 -0.22 0.42 16 36 H 0.08 0.57 7.76 -51.93 -0.40 0.17 16 37 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.08 0.43 6.96 -51.93 -0.36 0.07 16 41 H 0.07 0.43 6.90 -51.93 -0.36 0.07 16 42 H 0.08 0.75 7.81 -51.93 -0.41 0.34 16 43 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.35 5.59 8.00 -39.29 -0.31 5.28 16 45 H 0.05 0.65 8.13 -51.93 -0.42 0.22 16 46 H 0.09 1.31 8.09 -51.93 -0.42 0.89 16 47 H 0.39 9.23 7.90 -40.82 -0.32 8.91 16 48 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 49 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 50 H 0.08 1.15 8.03 -51.93 -0.42 0.73 16 LS Contribution 396.36 15.07 5.97 5.97 Total: -1.00 -34.66 396.36 -9.04 -43.71 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: -8.11 Total: 10.48 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: -0.77 Total: 8.30 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: -0.39 Total: -55.01 kcal Atomic # 8 Polarization: -28.63 SS G_CDS: -0.72 Total: -29.36 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.66 -9.04 -43.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662503876.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.400 kcal (2) G-P(sol) polarization free energy of solvation -34.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds