Wall clock time and date at job start Tue Mar 31 2020 23:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46630 * 2 1 4 4 H 1.09001 * 110.43811 * 51.36884 * 3 2 1 5 5 C 1.54813 * 110.60435 * 288.74281 * 3 2 1 6 6 C 1.54996 * 102.08970 * 220.39103 * 5 3 2 7 7 O 1.44383 * 103.49460 * 37.02309 * 6 5 3 8 8 C 1.43744 * 106.97286 * 319.93851 * 7 6 5 9 9 H 1.09002 * 109.87705 * 267.08866 * 8 7 6 10 10 C 1.50701 * 110.00146 * 146.00773 * 8 7 6 11 11 O 1.21280 * 119.99782 * 342.68693 * 10 8 7 12 12 N 1.34773 * 119.99848 * 162.68903 * 10 8 7 13 13 C 1.47427 * 125.65210 * 4.71928 * 12 10 8 14 14 C 1.54907 * 104.83216 * 204.09246 * 13 12 10 15 15 C 1.55158 * 101.58215 * 322.98925 * 14 13 12 16 16 H 1.08996 * 110.71935 * 276.96253 * 15 14 13 17 17 N 1.46898 * 110.71901 * 153.86647 * 15 14 13 18 18 C 1.46900 * 110.99730 * 86.45435 * 17 15 14 19 19 C 1.50709 * 109.46700 * 179.97438 * 18 17 15 20 20 O 1.21285 * 119.99995 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99667 * 179.97438 * 19 18 17 22 22 C 1.37101 * 119.99822 * 180.02562 * 21 19 18 23 23 H 1.07996 * 119.99993 * 0.02562 * 22 21 19 24 24 C 1.38949 * 119.99737 * 179.97438 * 22 21 19 25 25 N 1.31407 * 120.00369 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99744 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.46903 * 90.00723 * 26 24 22 28 28 H 1.48499 * 109.47269 * 210.00446 * 26 24 22 29 29 H 1.48500 * 109.47551 * 330.01048 * 26 24 22 30 30 C 1.47023 * 125.64417 * 184.41033 * 12 10 8 31 31 H 1.09005 * 109.47176 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47508 * 299.99691 * 1 2 3 33 33 H 1.09001 * 109.47519 * 59.99884 * 1 2 3 34 34 H 1.08999 * 109.46721 * 240.00795 * 2 1 3 35 35 H 1.08995 * 109.46863 * 120.00337 * 2 1 3 36 36 H 1.08995 * 110.90270 * 338.58549 * 5 3 2 37 37 H 1.09000 * 110.90187 * 102.19240 * 5 3 2 38 38 H 1.09001 * 110.61246 * 155.52637 * 6 5 3 39 39 H 1.08997 * 110.61753 * 278.36236 * 6 5 3 40 40 H 1.09005 * 110.36109 * 322.93203 * 13 12 10 41 41 H 1.08998 * 110.36568 * 85.24938 * 13 12 10 42 42 H 1.09002 * 111.00473 * 81.06408 * 14 13 12 43 43 H 1.08998 * 111.00359 * 204.91483 * 14 13 12 44 44 H 1.00894 * 111.00048 * 322.49673 * 17 15 14 45 45 H 1.09002 * 109.47289 * 299.99495 * 18 17 15 46 46 H 1.09004 * 109.47543 * 60.00159 * 18 17 15 47 47 H 0.97002 * 120.00093 * 359.97438 * 21 19 18 48 48 H 0.97004 * 120.00237 * 179.97438 * 25 24 22 49 49 H 1.09006 * 109.88343 * 298.38939 * 30 12 10 50 50 H 1.09002 * 109.88469 * 59.56068 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5655 2.0139 0.7979 5 6 1.7824 2.1114 -1.3723 6 6 3.0884 2.9169 -1.5909 7 8 4.1109 2.0555 -1.0456 8 6 3.5730 1.4726 0.1532 9 1 3.8475 2.0797 1.0159 10 6 4.0984 0.0707 0.3253 11 8 4.5937 -0.5111 -0.6165 12 7 4.0179 -0.5364 1.5259 13 6 3.3562 0.0123 2.7236 14 6 4.0425 -0.6987 3.9166 15 6 4.2621 -2.1244 3.3450 16 1 3.3588 -2.7253 3.4498 17 7 5.3993 -2.7794 4.0050 18 6 4.9742 -3.4555 5.2379 19 6 6.1648 -4.1149 5.8853 20 8 7.2597 -4.0294 5.3705 21 7 6.0131 -4.7985 7.0368 22 6 7.0962 -5.3979 7.6260 23 1 8.0711 -5.3219 7.1676 24 6 6.9398 -6.1023 8.8135 25 7 5.7537 -6.1944 9.3715 26 14 8.4155 -6.9195 9.6159 27 1 9.0589 -5.9665 10.5557 28 1 7.9699 -8.1244 10.3607 29 1 9.3911 -7.3172 8.5693 30 6 4.5698 -1.8585 1.8561 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.8933 -0.5137 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 1.6529 1.3612 -2.1523 37 1 0.9191 2.7752 -1.3255 38 1 3.2591 3.0903 -2.6534 39 1 3.0512 3.8625 -1.0501 40 1 3.5122 1.0895 2.7832 41 1 2.2908 -0.2172 2.7071 42 1 4.9933 -0.2244 4.1596 43 1 3.3863 -0.7234 4.7866 44 1 6.1388 -2.1187 4.1914 45 1 4.5456 -2.7248 5.9239 46 1 4.2263 -4.2115 4.9985 47 1 5.1376 -4.8659 7.4491 48 1 5.6445 -6.6865 10.2003 49 1 4.0994 -2.6220 1.2364 50 1 5.6480 -1.8606 1.6962 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662503876.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:23 Heat of formation + Delta-G solvation = -133.837382 kcal Electronic energy + Delta-G solvation = -29939.862145 eV Core-core repulsion = 25772.981829 eV Total energy + Delta-G solvation = -4166.880316 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.93868 -40.36096 -39.83041 -38.54604 -36.29547 -35.86235 -35.35941 -33.26726 -31.98459 -31.28260 -30.58888 -29.62487 -27.71726 -25.82772 -24.90504 -24.05327 -23.60803 -22.08002 -21.64474 -21.08808 -20.02466 -19.91818 -18.41192 -17.91982 -17.70925 -17.43930 -16.90184 -16.80869 -16.35093 -16.07151 -15.78976 -15.60735 -15.52716 -15.15815 -15.08594 -14.64360 -14.46352 -14.18313 -14.10753 -13.69890 -13.59360 -13.52577 -13.47440 -13.15245 -13.04001 -12.96837 -12.68607 -12.59194 -12.43578 -12.39196 -12.17424 -12.12345 -12.10845 -11.82329 -11.65067 -11.50484 -11.47359 -11.13726 -10.53335 -10.34908 -10.00660 -9.75069 -9.30758 -8.46420 -5.94650 1.37968 1.42191 1.44207 1.54484 1.69934 2.06590 2.29666 2.89027 2.97951 3.21083 3.26220 3.41402 3.44448 3.61707 3.66853 3.79748 3.98195 4.06051 4.13811 4.24036 4.24901 4.31830 4.37365 4.37781 4.43379 4.48706 4.52310 4.61297 4.65492 4.71930 4.79640 4.81332 4.82134 4.84762 4.97175 5.01383 5.09074 5.12011 5.17827 5.20549 5.24687 5.41613 5.41773 5.79213 5.89804 6.10922 6.34023 6.41172 6.61269 7.05719 7.13742 7.57557 8.13534 8.70727 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.030392 B = 0.001849 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.065779 B =15138.018837 C =15582.919291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.132 4.132 3 C -0.102 4.102 4 H 0.131 0.869 5 C -0.144 4.144 6 C 0.037 3.963 7 O -0.391 6.391 8 C 0.065 3.935 9 H 0.115 0.885 10 C 0.528 3.472 11 O -0.581 6.581 12 N -0.614 5.614 13 C 0.097 3.903 14 C -0.160 4.160 15 C 0.087 3.913 16 H 0.114 0.886 17 N -0.679 5.679 18 C 0.070 3.930 19 C 0.435 3.565 20 O -0.627 6.627 21 N -0.572 5.572 22 C -0.334 4.334 23 H 0.076 0.924 24 C -0.012 4.012 25 N -0.918 5.918 26 Si 0.991 3.009 27 H -0.270 1.270 28 H -0.270 1.270 29 H -0.276 1.276 30 C 0.117 3.883 31 H 0.050 0.950 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.032 0.968 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.116 0.884 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.072 0.928 43 H 0.113 0.887 44 H 0.346 0.654 45 H 0.079 0.921 46 H 0.107 0.893 47 H 0.398 0.602 48 H 0.278 0.722 49 H 0.062 0.938 50 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.656 21.030 -13.574 31.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C -0.120 4.120 4 H 0.149 0.851 5 C -0.181 4.181 6 C -0.039 4.039 7 O -0.310 6.310 8 C 0.004 3.996 9 H 0.132 0.868 10 C 0.317 3.683 11 O -0.461 6.461 12 N -0.349 5.349 13 C -0.024 4.024 14 C -0.200 4.200 15 C -0.024 4.024 16 H 0.132 0.868 17 N -0.311 5.311 18 C -0.062 4.062 19 C 0.223 3.777 20 O -0.514 6.514 21 N -0.209 5.209 22 C -0.464 4.464 23 H 0.094 0.906 24 C -0.212 4.212 25 N -0.559 5.559 26 Si 0.815 3.185 27 H -0.196 1.196 28 H -0.195 1.195 29 H -0.201 1.201 30 C -0.006 4.006 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.051 0.949 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.134 0.866 38 H 0.117 0.883 39 H 0.107 0.893 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.091 0.909 43 H 0.131 0.869 44 H 0.166 0.834 45 H 0.097 0.903 46 H 0.125 0.875 47 H 0.232 0.768 48 H 0.087 0.913 49 H 0.080 0.920 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -17.550 20.101 -14.783 30.505 hybrid contribution 0.616 -0.235 1.002 1.200 sum -16.934 19.866 -13.781 29.518 Atomic orbital electron populations 1.21711 0.93218 1.02033 1.03025 1.21864 0.98159 0.95202 1.01769 1.22640 0.90735 0.98067 1.00593 0.85123 1.23251 0.99176 0.99809 0.95910 1.23896 0.85893 0.93627 1.00476 1.88965 1.39609 1.62340 1.40069 1.22914 0.95519 0.90259 0.90878 0.86754 1.20671 0.78007 0.88617 0.80977 1.90699 1.47074 1.67459 1.40842 1.48514 1.56161 1.19293 1.10924 1.22689 0.97949 0.99968 0.81835 1.23574 1.02490 0.95159 0.98755 1.22597 0.93951 0.94561 0.91281 0.86797 1.59870 1.10310 1.35413 1.25500 1.21532 0.94451 0.99035 0.91143 1.20993 0.91189 0.83332 0.82235 1.90508 1.29590 1.65867 1.65442 1.41911 1.11022 1.46768 1.21223 1.19633 0.90364 1.30499 1.05866 0.90584 1.25992 1.00643 0.97728 0.96803 1.69655 1.23278 1.42595 1.20339 0.84963 0.77597 0.77972 0.78016 1.19560 1.19499 1.20102 1.21755 0.98399 0.84261 0.96213 0.93125 0.90549 0.92131 0.94875 0.90775 0.91785 0.86590 0.88348 0.89293 0.88055 0.88027 0.90934 0.86907 0.83385 0.90337 0.87452 0.76791 0.91280 0.91999 0.93380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.80 71.98 0.71 -0.57 16 2 C -0.13 -1.83 4.17 30.59 0.13 -1.70 16 3 C -0.10 -1.07 2.89 -9.80 -0.03 -1.10 16 4 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 5 C -0.14 -1.40 6.09 31.90 0.19 -1.21 16 6 C 0.04 0.46 7.72 72.66 0.56 1.02 16 7 O -0.39 -9.03 10.80 -130.96 -1.41 -10.44 16 8 C 0.07 1.15 3.18 30.22 0.10 1.25 16 9 H 0.12 1.39 7.09 -2.39 -0.02 1.37 16 10 C 0.53 13.59 5.14 87.66 0.45 14.04 16 11 O -0.58 -21.65 16.95 14.99 0.25 -21.39 16 12 N -0.61 -12.59 2.50 -811.75 -2.03 -14.62 16 13 C 0.10 1.06 5.93 86.85 0.52 1.57 16 14 C -0.16 -2.17 6.63 31.99 0.21 -1.96 16 15 C 0.09 1.76 3.23 46.11 0.15 1.91 16 16 H 0.11 1.93 7.89 -2.39 -0.02 1.91 16 17 N -0.68 -20.07 5.91 -489.40 -2.89 -22.96 16 18 C 0.07 2.18 6.02 85.56 0.52 2.70 16 19 C 0.43 20.13 7.82 87.66 0.69 20.82 16 20 O -0.63 -34.79 15.78 -3.05 -0.05 -34.84 16 21 N -0.57 -28.64 5.29 -306.98 -1.62 -30.26 16 22 C -0.33 -18.84 9.68 84.04 0.81 -18.03 16 23 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 24 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 25 N -0.92 -48.63 13.05 21.66 0.28 -48.35 16 26 Si 0.99 42.77 29.55 68.60 2.03 44.80 16 27 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 28 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 29 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 30 C 0.12 2.91 6.64 86.73 0.58 3.49 16 31 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 32 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.06 0.48 7.67 -2.39 -0.02 0.46 16 34 H 0.03 0.70 7.72 -2.39 -0.02 0.68 16 35 H 0.07 1.06 4.21 -2.39 -0.01 1.05 16 36 H 0.06 0.86 7.76 -2.39 -0.02 0.84 16 37 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.10 0.66 6.96 -2.38 -0.02 0.65 16 41 H 0.10 0.66 6.90 -2.39 -0.02 0.64 16 42 H 0.07 1.16 7.81 -2.39 -0.02 1.14 16 43 H 0.11 1.04 8.14 -2.39 -0.02 1.03 16 44 H 0.35 11.05 8.00 -89.70 -0.72 10.33 16 45 H 0.08 1.96 8.13 -2.39 -0.02 1.94 16 46 H 0.11 2.95 8.09 -2.38 -0.02 2.93 16 47 H 0.40 18.63 7.90 -92.71 -0.73 17.90 16 48 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 49 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 50 H 0.05 1.49 8.03 -2.39 -0.02 1.47 16 Total: -1.00 -81.37 396.36 0.11 -81.27 By element: Atomic # 1 Polarization: 35.21 SS G_CDS: -0.49 Total: 34.72 kcal Atomic # 6 Polarization: 16.04 SS G_CDS: 6.04 Total: 22.08 kcal Atomic # 7 Polarization: -109.93 SS G_CDS: -6.26 Total: -116.19 kcal Atomic # 8 Polarization: -65.47 SS G_CDS: -1.21 Total: -66.68 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -81.37 0.11 -81.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662503876.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.571 kcal (2) G-P(sol) polarization free energy of solvation -81.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds