Wall clock time and date at job start Tue Mar 31 2020 23:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47556 * 2 1 4 4 H 1.08999 * 110.67245 * 52.03846 * 3 2 1 5 5 O 1.44381 * 110.61987 * 289.07707 * 3 2 1 6 6 C 1.43744 * 106.97544 * 201.43777 * 5 3 2 7 7 C 1.54103 * 107.29542 * 26.50763 * 6 5 3 8 8 C 1.54813 * 104.18801 * 357.97293 * 7 6 5 9 9 H 1.09005 * 110.90600 * 97.34994 * 8 7 6 10 10 C 1.50698 * 110.90616 * 220.92274 * 8 7 6 11 11 O 1.21280 * 119.99745 * 118.54867 * 10 8 7 12 12 N 1.34774 * 119.99753 * 298.54196 * 10 8 7 13 13 C 1.47425 * 125.65138 * 0.02907 * 12 10 8 14 14 C 1.54908 * 104.92961 * 204.15299 * 13 12 10 15 15 C 1.55154 * 101.58289 * 322.93718 * 14 13 12 16 16 H 1.08994 * 110.71922 * 276.96131 * 15 14 13 17 17 N 1.46901 * 110.72208 * 153.86260 * 15 14 13 18 18 C 1.46901 * 110.99976 * 86.45388 * 17 15 14 19 19 C 1.50696 * 109.47330 * 180.02562 * 18 17 15 20 20 O 1.21295 * 120.00060 * 359.97438 * 19 18 17 21 21 N 1.34778 * 120.00003 * 180.02562 * 19 18 17 22 22 C 1.37096 * 120.00027 * 179.97438 * 21 19 18 23 23 H 1.07998 * 120.00128 * 0.02562 * 22 21 19 24 24 C 1.38953 * 120.00252 * 179.97438 * 22 21 19 25 25 N 1.31413 * 119.99722 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 120.00347 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47328 * 59.99690 * 26 24 22 28 28 H 1.48496 * 109.47598 * 179.97438 * 26 24 22 29 29 H 1.48505 * 109.47199 * 300.00378 * 26 24 22 30 30 C 1.47290 * 125.79121 * 180.02562 * 12 10 8 31 31 H 1.08998 * 109.46905 * 59.99335 * 1 2 3 32 32 H 1.08996 * 109.47283 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46726 * 299.99679 * 1 2 3 34 34 H 1.09005 * 109.47187 * 240.00294 * 2 1 3 35 35 H 1.09001 * 109.47400 * 120.00756 * 2 1 3 36 36 H 1.09000 * 109.87645 * 267.08632 * 6 5 3 37 37 H 1.08994 * 110.00721 * 146.00777 * 6 5 3 38 38 H 1.09002 * 110.48859 * 239.29945 * 7 6 5 39 39 H 1.08998 * 110.59915 * 116.70342 * 7 6 5 40 40 H 1.09002 * 110.36696 * 85.25946 * 13 12 10 41 41 H 1.08995 * 110.36608 * 323.04783 * 13 12 10 42 42 H 1.09008 * 111.00494 * 81.01141 * 14 13 12 43 43 H 1.09000 * 111.00857 * 204.82205 * 14 13 12 44 44 H 1.00902 * 111.00204 * 210.40637 * 17 15 14 45 45 H 1.09002 * 109.47118 * 300.00032 * 18 17 15 46 46 H 1.09002 * 109.47383 * 59.99684 * 18 17 15 47 47 H 0.97002 * 120.00225 * 0.02562 * 21 19 18 48 48 H 0.97003 * 119.99787 * 179.97438 * 25 24 22 49 49 H 1.09004 * 109.85762 * 59.50172 * 30 12 10 50 50 H 1.08995 * 110.00297 * 298.43119 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5769 2.0143 0.8040 5 8 1.7932 2.0690 -1.2771 6 6 2.7073 3.1729 -1.3866 7 6 3.9334 2.8408 -0.5141 8 6 3.5845 1.4752 0.1264 9 1 4.0385 0.6564 -0.4318 10 6 4.0067 1.4361 1.5725 11 8 3.1764 1.2795 2.4426 12 7 5.3069 1.5751 1.8989 13 6 6.4155 1.7715 0.9472 14 6 7.6749 1.2608 1.6905 15 6 7.3884 1.7240 3.1433 16 1 7.6768 2.7662 3.2798 17 7 8.0835 0.8634 4.1099 18 6 9.4548 1.3355 4.3440 19 6 10.1350 0.4298 5.3380 20 8 9.5362 -0.5157 5.8058 21 7 11.4084 0.6709 5.7080 22 6 12.0270 -0.1527 6.6127 23 1 11.4942 -0.9950 7.0286 24 6 13.3400 0.0956 6.9938 25 7 13.9886 1.1202 6.4874 26 14 14.1832 -1.0270 8.2259 27 1 14.2210 -2.4112 7.6893 28 1 15.5696 -0.5503 8.4621 29 1 13.4295 -1.0127 9.5053 30 6 5.8590 1.5565 3.2643 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 2.2319 4.0850 -1.0259 37 1 3.0147 3.3010 -2.4245 38 1 4.0703 3.5997 0.2562 39 1 4.8297 2.7561 -1.1286 40 1 6.5222 2.8282 0.7019 41 1 6.2464 1.1880 0.0422 42 1 7.7484 0.1747 1.6340 43 1 8.5770 1.7321 1.3003 44 1 7.5691 0.8031 4.9758 45 1 10.0082 1.3244 3.4050 46 1 9.4271 2.3516 4.7375 47 1 11.8869 1.4277 5.3348 48 1 14.9051 1.2937 6.7537 49 1 5.6271 0.6058 3.7445 50 1 5.4411 2.3775 3.8467 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662520141.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:49 Heat of formation + Delta-G solvation = -118.069983 kcal Electronic energy + Delta-G solvation = -29445.031654 eV Core-core repulsion = 25278.835065 eV Total energy + Delta-G solvation = -4166.196590 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.97804 -39.40007 -38.36581 -37.59575 -34.88364 -33.89893 -33.82837 -32.82052 -31.27960 -30.64783 -29.23000 -28.67950 -26.26503 -24.67342 -23.78934 -23.61999 -22.20975 -21.45717 -20.65561 -19.63114 -19.26211 -17.93763 -17.68903 -16.86873 -16.56028 -16.21165 -16.03774 -15.71110 -15.29355 -15.10268 -14.58989 -14.37141 -14.09756 -13.98916 -13.83510 -13.70794 -13.66972 -13.40390 -13.36132 -13.12392 -12.57791 -12.44317 -12.34949 -12.03094 -11.85427 -11.79277 -11.70806 -11.48441 -11.29277 -11.25110 -11.15660 -11.09856 -11.02747 -10.95008 -10.46630 -10.24584 -10.17046 -9.95720 -9.53518 -8.94197 -8.53711 -8.20183 -8.00184 -6.45140 -3.86066 2.30296 2.56885 3.17986 3.24003 3.28424 3.38728 3.85978 3.95697 4.00473 4.11067 4.18200 4.24017 4.37711 4.43245 4.56083 4.72728 4.74319 4.86509 4.91587 4.97179 5.01709 5.05841 5.12299 5.17775 5.21172 5.28027 5.29532 5.30950 5.43567 5.52182 5.54580 5.60399 5.62312 5.70195 5.74854 5.76068 5.86139 5.88854 5.94649 6.04293 6.05192 6.22368 6.50162 7.09121 7.18979 7.50694 7.51998 7.84048 8.02224 8.57125 9.14250 9.49967 10.01248 10.72380 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.031435 B = 0.001728 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.517798 B =16202.046555 C =16764.982219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C 0.099 3.901 4 H 0.084 0.916 5 O -0.371 6.371 6 C 0.049 3.951 7 C -0.146 4.146 8 C -0.138 4.138 9 H 0.113 0.887 10 C 0.540 3.460 11 O -0.535 6.535 12 N -0.612 5.612 13 C 0.098 3.902 14 C -0.125 4.125 15 C 0.074 3.926 16 H 0.060 0.940 17 N -0.657 5.657 18 C 0.052 3.948 19 C 0.439 3.561 20 O -0.583 6.583 21 N -0.562 5.562 22 C -0.301 4.301 23 H 0.103 0.897 24 C 0.023 3.977 25 N -0.902 5.902 26 Si 0.931 3.069 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.274 1.274 30 C 0.108 3.892 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.060 0.940 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.353 0.647 45 H 0.087 0.913 46 H 0.045 0.955 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.082 0.918 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.722 7.073 -18.080 26.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C 0.041 3.959 4 H 0.101 0.899 5 O -0.290 6.290 6 C -0.028 4.028 7 C -0.184 4.184 8 C -0.160 4.160 9 H 0.131 0.869 10 C 0.328 3.672 11 O -0.411 6.411 12 N -0.347 5.347 13 C -0.025 4.025 14 C -0.163 4.163 15 C -0.037 4.037 16 H 0.078 0.922 17 N -0.291 5.291 18 C -0.081 4.081 19 C 0.225 3.775 20 O -0.467 6.467 21 N -0.199 5.199 22 C -0.430 4.430 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.758 3.242 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 C -0.015 4.015 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.079 0.921 37 H 0.106 0.894 38 H 0.098 0.902 39 H 0.106 0.894 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.109 0.891 43 H 0.102 0.898 44 H 0.174 0.826 45 H 0.105 0.895 46 H 0.063 0.937 47 H 0.225 0.775 48 H 0.082 0.918 49 H 0.101 0.899 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -19.422 5.884 -17.882 27.048 hybrid contribution 1.118 0.939 1.024 1.783 sum -18.304 6.822 -16.857 25.802 Atomic orbital electron populations 1.21700 0.94994 1.01701 1.02169 1.21548 0.97057 0.93795 1.02911 1.23021 0.91037 0.95435 0.86415 0.89859 1.88902 1.58384 1.44948 1.36768 1.23110 0.88873 0.90319 1.00520 1.22974 0.99919 0.95728 0.99818 1.22904 0.98989 1.00334 0.93772 0.86905 1.19853 0.80639 0.76295 0.90424 1.90733 1.50402 1.49316 1.50680 1.48423 1.06035 1.71803 1.08404 1.22464 0.86150 1.00896 0.93010 1.22897 0.96343 1.03209 0.93883 1.22541 0.91680 0.95460 0.93979 0.92235 1.60154 1.02224 1.50381 1.16300 1.21712 0.90144 0.96406 0.99829 1.19767 0.83397 0.88101 0.86273 1.90536 1.65180 1.32220 1.58756 1.41849 1.10794 1.27834 1.39411 1.19660 0.95469 1.09137 1.18754 0.87947 1.25265 0.96619 0.97303 0.98701 1.69603 1.12391 1.28198 1.44084 0.85908 0.77911 0.79928 0.80423 1.19868 1.20964 1.19901 1.22081 0.92658 1.03072 0.83699 0.92238 0.92608 0.92625 0.91224 0.90087 0.92147 0.89440 0.90194 0.89393 0.91130 0.90411 0.89091 0.89776 0.82614 0.89491 0.93666 0.77459 0.91799 0.89941 0.91290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.86 37.16 0.37 -0.85 16 2 C -0.12 -1.03 5.69 -26.74 -0.15 -1.18 16 3 C 0.10 0.92 2.34 -25.68 -0.06 0.86 16 4 H 0.08 0.90 7.53 -51.93 -0.39 0.51 16 5 O -0.37 -3.47 11.08 -35.23 -0.39 -3.86 16 6 C 0.05 0.32 7.70 37.73 0.29 0.61 16 7 C -0.15 -0.89 5.46 -25.20 -0.14 -1.03 16 8 C -0.14 -1.14 2.20 -89.76 -0.20 -1.34 16 9 H 0.11 0.81 7.89 -51.93 -0.41 0.40 16 10 C 0.54 6.02 7.11 -10.99 -0.08 5.94 16 11 O -0.53 -7.89 16.04 5.56 0.09 -7.80 16 12 N -0.61 -6.18 3.33 -170.31 -0.57 -6.75 16 13 C 0.10 0.72 5.55 -2.53 -0.01 0.70 16 14 C -0.12 -1.15 6.71 -24.58 -0.17 -1.31 16 15 C 0.07 0.81 3.24 -65.88 -0.21 0.60 16 16 H 0.06 0.60 7.89 -51.93 -0.41 0.19 16 17 N -0.66 -9.80 5.93 -106.06 -0.63 -10.43 16 18 C 0.05 0.85 6.02 -4.98 -0.03 0.82 16 19 C 0.44 10.05 7.82 -10.99 -0.09 9.96 16 20 O -0.58 -15.55 15.78 5.54 0.09 -15.46 16 21 N -0.56 -13.91 5.29 -10.96 -0.06 -13.97 16 22 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 23 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 24 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 25 N -0.90 -24.11 13.05 55.50 0.72 -23.39 16 26 Si 0.93 20.83 29.55 -169.99 -5.02 15.81 16 27 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 28 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 29 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 30 C 0.11 1.21 6.41 -2.92 -0.02 1.19 16 31 H 0.06 0.49 8.06 -51.93 -0.42 0.07 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.79 8.04 -51.93 -0.42 0.38 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.51 7.85 -51.93 -0.41 0.10 16 39 H 0.09 0.37 7.93 -51.93 -0.41 -0.05 16 40 H 0.07 0.41 8.10 -51.93 -0.42 -0.02 16 41 H 0.08 0.45 7.56 -51.93 -0.39 0.06 16 42 H 0.09 1.00 8.14 -51.92 -0.42 0.57 16 43 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.35 5.56 8.15 -39.29 -0.32 5.24 16 45 H 0.09 1.29 8.13 -51.93 -0.42 0.87 16 46 H 0.05 0.66 8.09 -51.93 -0.42 0.24 16 47 H 0.39 9.22 7.90 -40.82 -0.32 8.89 16 48 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 49 H 0.08 1.08 7.97 -51.93 -0.41 0.66 16 50 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 404.37 15.07 6.09 6.09 Total: -1.00 -32.99 404.37 -8.88 -41.87 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -8.47 Total: 10.82 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: -0.74 Total: 7.07 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: -0.53 Total: -54.53 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -0.21 Total: -27.12 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.99 -8.88 -41.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662520141.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.203 kcal (2) G-P(sol) polarization free energy of solvation -32.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds