Wall clock time and date at job start Tue Mar 31 2020 23:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47556 * 2 1 4 4 H 1.08999 * 110.67245 * 52.03846 * 3 2 1 5 5 O 1.44381 * 110.61987 * 289.07707 * 3 2 1 6 6 C 1.43744 * 106.97544 * 201.43777 * 5 3 2 7 7 C 1.54103 * 107.29542 * 26.50763 * 6 5 3 8 8 C 1.54813 * 104.18801 * 357.97293 * 7 6 5 9 9 H 1.09005 * 110.90600 * 97.34994 * 8 7 6 10 10 C 1.50698 * 110.90616 * 220.92274 * 8 7 6 11 11 O 1.21280 * 119.99745 * 118.54867 * 10 8 7 12 12 N 1.34774 * 119.99753 * 298.54196 * 10 8 7 13 13 C 1.47425 * 125.65138 * 0.02907 * 12 10 8 14 14 C 1.54908 * 104.92961 * 204.15299 * 13 12 10 15 15 C 1.55154 * 101.58289 * 322.93718 * 14 13 12 16 16 H 1.08994 * 110.71922 * 276.96131 * 15 14 13 17 17 N 1.46901 * 110.72208 * 153.86260 * 15 14 13 18 18 C 1.46901 * 110.99976 * 86.45388 * 17 15 14 19 19 C 1.50696 * 109.47330 * 180.02562 * 18 17 15 20 20 O 1.21295 * 120.00060 * 359.97438 * 19 18 17 21 21 N 1.34778 * 120.00003 * 180.02562 * 19 18 17 22 22 C 1.37096 * 120.00027 * 179.97438 * 21 19 18 23 23 H 1.07998 * 120.00128 * 0.02562 * 22 21 19 24 24 C 1.38953 * 120.00252 * 179.97438 * 22 21 19 25 25 N 1.31413 * 119.99722 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 120.00347 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47328 * 59.99690 * 26 24 22 28 28 H 1.48496 * 109.47598 * 179.97438 * 26 24 22 29 29 H 1.48505 * 109.47199 * 300.00378 * 26 24 22 30 30 C 1.47290 * 125.79121 * 180.02562 * 12 10 8 31 31 H 1.08998 * 109.46905 * 59.99335 * 1 2 3 32 32 H 1.08996 * 109.47283 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46726 * 299.99679 * 1 2 3 34 34 H 1.09005 * 109.47187 * 240.00294 * 2 1 3 35 35 H 1.09001 * 109.47400 * 120.00756 * 2 1 3 36 36 H 1.09000 * 109.87645 * 267.08632 * 6 5 3 37 37 H 1.08994 * 110.00721 * 146.00777 * 6 5 3 38 38 H 1.09002 * 110.48859 * 239.29945 * 7 6 5 39 39 H 1.08998 * 110.59915 * 116.70342 * 7 6 5 40 40 H 1.09002 * 110.36696 * 85.25946 * 13 12 10 41 41 H 1.08995 * 110.36608 * 323.04783 * 13 12 10 42 42 H 1.09008 * 111.00494 * 81.01141 * 14 13 12 43 43 H 1.09000 * 111.00857 * 204.82205 * 14 13 12 44 44 H 1.00902 * 111.00204 * 210.40637 * 17 15 14 45 45 H 1.09002 * 109.47118 * 300.00032 * 18 17 15 46 46 H 1.09002 * 109.47383 * 59.99684 * 18 17 15 47 47 H 0.97002 * 120.00225 * 0.02562 * 21 19 18 48 48 H 0.97003 * 119.99787 * 179.97438 * 25 24 22 49 49 H 1.09004 * 109.85762 * 59.50172 * 30 12 10 50 50 H 1.08995 * 110.00297 * 298.43119 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5769 2.0143 0.8040 5 8 1.7932 2.0690 -1.2771 6 6 2.7073 3.1729 -1.3866 7 6 3.9334 2.8408 -0.5141 8 6 3.5845 1.4752 0.1264 9 1 4.0385 0.6564 -0.4318 10 6 4.0067 1.4361 1.5725 11 8 3.1764 1.2795 2.4426 12 7 5.3069 1.5751 1.8989 13 6 6.4155 1.7715 0.9472 14 6 7.6749 1.2608 1.6905 15 6 7.3884 1.7240 3.1433 16 1 7.6768 2.7662 3.2798 17 7 8.0835 0.8634 4.1099 18 6 9.4548 1.3355 4.3440 19 6 10.1350 0.4298 5.3380 20 8 9.5362 -0.5157 5.8058 21 7 11.4084 0.6709 5.7080 22 6 12.0270 -0.1527 6.6127 23 1 11.4942 -0.9950 7.0286 24 6 13.3400 0.0956 6.9938 25 7 13.9886 1.1202 6.4874 26 14 14.1832 -1.0270 8.2259 27 1 14.2210 -2.4112 7.6893 28 1 15.5696 -0.5503 8.4621 29 1 13.4295 -1.0127 9.5053 30 6 5.8590 1.5565 3.2643 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 2.2319 4.0850 -1.0259 37 1 3.0147 3.3010 -2.4245 38 1 4.0703 3.5997 0.2562 39 1 4.8297 2.7561 -1.1286 40 1 6.5222 2.8282 0.7019 41 1 6.2464 1.1880 0.0422 42 1 7.7484 0.1747 1.6340 43 1 8.5770 1.7321 1.3003 44 1 7.5691 0.8031 4.9758 45 1 10.0082 1.3244 3.4050 46 1 9.4271 2.3516 4.7375 47 1 11.8869 1.4277 5.3348 48 1 14.9051 1.2937 6.7537 49 1 5.6271 0.6058 3.7445 50 1 5.4411 2.3775 3.8467 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662520141.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:48 Heat of formation + Delta-G solvation = -142.846212 kcal Electronic energy + Delta-G solvation = -29446.106032 eV Core-core repulsion = 25278.835065 eV Total energy + Delta-G solvation = -4167.270968 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.73535 -40.34236 -39.87400 -38.62632 -36.22887 -35.60211 -34.53881 -33.54771 -33.24418 -31.52688 -30.10370 -29.37524 -27.77688 -25.90889 -25.01429 -24.27764 -22.82512 -22.14845 -21.52846 -21.11058 -20.32575 -19.89993 -18.44622 -17.78945 -17.64081 -17.30833 -16.83728 -16.80631 -16.38310 -16.35960 -15.97795 -15.67504 -15.30724 -15.07508 -14.71450 -14.59869 -14.53655 -14.35392 -14.15448 -14.04889 -13.82214 -13.48138 -13.42791 -13.21641 -13.13611 -12.84869 -12.64487 -12.51101 -12.43639 -12.39037 -12.14438 -12.10501 -11.89171 -11.83267 -11.79416 -11.63694 -11.50347 -10.99954 -10.63578 -10.35143 -10.01411 -9.76745 -9.39736 -8.46648 -5.95099 1.39728 1.42120 1.47396 1.52499 1.76910 2.05864 2.29438 2.75817 2.91474 3.20810 3.28899 3.45703 3.52357 3.53081 3.66483 3.73058 3.99992 4.09852 4.12469 4.17796 4.22067 4.27887 4.33255 4.36522 4.40161 4.49175 4.51407 4.59481 4.65314 4.74759 4.75798 4.78766 4.82419 4.85348 4.96829 4.98116 5.05063 5.06866 5.18624 5.19994 5.29081 5.35600 5.41142 5.88267 5.88913 6.09411 6.28412 6.42082 6.60513 7.00579 7.13006 7.56715 8.12473 8.70252 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.031435 B = 0.001728 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.517798 B =16202.046555 C =16764.982219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C 0.098 3.902 4 H 0.060 0.940 5 O -0.385 6.385 6 C 0.041 3.959 7 C -0.138 4.138 8 C -0.132 4.132 9 H 0.130 0.870 10 C 0.535 3.465 11 O -0.582 6.582 12 N -0.611 5.611 13 C 0.099 3.901 14 C -0.122 4.122 15 C 0.078 3.922 16 H 0.081 0.919 17 N -0.674 5.674 18 C 0.069 3.931 19 C 0.435 3.565 20 O -0.626 6.626 21 N -0.572 5.572 22 C -0.336 4.336 23 H 0.077 0.923 24 C -0.011 4.011 25 N -0.918 5.918 26 Si 0.991 3.009 27 H -0.273 1.273 28 H -0.270 1.270 29 H -0.273 1.273 30 C 0.109 3.891 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.046 0.954 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.109 0.891 38 H 0.077 0.923 39 H 0.118 0.882 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.070 0.930 43 H 0.106 0.894 44 H 0.344 0.656 45 H 0.111 0.889 46 H 0.071 0.929 47 H 0.398 0.602 48 H 0.278 0.722 49 H 0.055 0.945 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.692 8.394 -20.338 28.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.153 4.153 3 C 0.040 3.960 4 H 0.078 0.922 5 O -0.305 6.305 6 C -0.035 4.035 7 C -0.176 4.176 8 C -0.153 4.153 9 H 0.148 0.852 10 C 0.325 3.675 11 O -0.462 6.462 12 N -0.344 5.344 13 C -0.023 4.023 14 C -0.161 4.161 15 C -0.032 4.032 16 H 0.099 0.901 17 N -0.307 5.307 18 C -0.063 4.063 19 C 0.223 3.777 20 O -0.513 6.513 21 N -0.209 5.209 22 C -0.465 4.465 23 H 0.095 0.905 24 C -0.211 4.211 25 N -0.559 5.559 26 Si 0.815 3.185 27 H -0.198 1.198 28 H -0.194 1.194 29 H -0.199 1.199 30 C -0.014 4.014 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.127 0.873 38 H 0.096 0.904 39 H 0.136 0.864 40 H 0.117 0.883 41 H 0.118 0.882 42 H 0.088 0.912 43 H 0.124 0.876 44 H 0.163 0.837 45 H 0.129 0.871 46 H 0.089 0.911 47 H 0.232 0.768 48 H 0.087 0.913 49 H 0.073 0.927 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.364 7.242 -20.189 28.236 hybrid contribution 0.733 0.540 1.714 1.941 sum -17.631 7.782 -18.474 26.697 Atomic orbital electron populations 1.21682 0.94736 1.02222 1.01717 1.21530 0.97381 0.93752 1.02636 1.22893 0.91924 0.95172 0.85996 0.92194 1.88885 1.59476 1.45850 1.36275 1.23335 0.88663 0.89508 1.01993 1.23006 1.00855 0.93922 0.99825 1.22884 0.98102 1.02458 0.91870 0.85240 1.20402 0.80473 0.75355 0.91298 1.90712 1.51762 1.51480 1.52218 1.48510 1.06469 1.70998 1.08469 1.22704 0.83850 1.02995 0.92703 1.22904 0.98287 1.02178 0.92700 1.22611 0.90685 0.95885 0.93971 0.90120 1.60165 1.01838 1.52152 1.16542 1.21562 0.90474 0.95573 0.98734 1.20939 0.82634 0.88012 0.86101 1.90507 1.66019 1.34394 1.60384 1.41908 1.11627 1.27856 1.39498 1.19611 0.96454 1.09762 1.20692 0.90497 1.25998 0.96602 0.98537 0.99969 1.69655 1.12769 1.28847 1.44583 0.85018 0.77346 0.78084 0.78069 1.19833 1.19403 1.19857 1.21947 0.93281 1.01610 0.84593 0.92218 0.91615 0.93480 0.90139 0.91527 0.92065 0.87257 0.90416 0.86356 0.88253 0.88162 0.91170 0.87609 0.83663 0.87104 0.91125 0.76834 0.91274 0.92673 0.91402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.86 71.98 0.71 -1.72 16 2 C -0.12 -2.05 5.69 30.59 0.17 -1.88 16 3 C 0.10 1.80 2.34 31.28 0.07 1.87 16 4 H 0.06 1.37 7.53 -2.39 -0.02 1.35 16 5 O -0.39 -6.69 11.08 -148.98 -1.65 -8.34 16 6 C 0.04 0.44 7.70 72.36 0.56 1.00 16 7 C -0.14 -1.24 5.46 31.59 0.17 -1.06 16 8 C -0.13 -1.94 2.20 -10.24 -0.02 -1.97 16 9 H 0.13 1.49 7.89 -2.38 -0.02 1.47 16 10 C 0.54 11.62 7.11 87.66 0.62 12.25 16 11 O -0.58 -17.86 16.04 -3.03 -0.05 -17.91 16 12 N -0.61 -11.40 3.33 -811.12 -2.71 -14.10 16 13 C 0.10 1.08 5.55 86.85 0.48 1.56 16 14 C -0.12 -1.87 6.71 31.98 0.21 -1.66 16 15 C 0.08 1.56 3.24 46.10 0.15 1.71 16 16 H 0.08 1.33 7.89 -2.39 -0.02 1.31 16 17 N -0.67 -19.58 5.93 -489.45 -2.90 -22.48 16 18 C 0.07 2.14 6.02 85.56 0.52 2.65 16 19 C 0.44 20.05 7.82 87.66 0.69 20.73 16 20 O -0.63 -34.38 15.78 -3.08 -0.05 -34.43 16 21 N -0.57 -28.53 5.29 -306.98 -1.62 -30.15 16 22 C -0.34 -18.83 9.68 84.04 0.81 -18.02 16 23 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 24 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 25 N -0.92 -48.49 13.05 21.66 0.28 -48.21 16 26 Si 0.99 42.50 29.55 68.60 2.03 44.52 16 27 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 28 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 29 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 30 C 0.11 2.42 6.41 86.68 0.56 2.97 16 31 H 0.06 0.98 8.06 -2.39 -0.02 0.96 16 32 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 35 H 0.07 1.36 8.04 -2.39 -0.02 1.34 16 36 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.11 0.69 8.14 -2.39 -0.02 0.68 16 38 H 0.08 0.76 7.85 -2.39 -0.02 0.74 16 39 H 0.12 0.37 7.93 -2.39 -0.02 0.35 16 40 H 0.10 0.61 8.10 -2.39 -0.02 0.59 16 41 H 0.10 0.70 7.56 -2.39 -0.02 0.69 16 42 H 0.07 1.40 8.14 -2.38 -0.02 1.39 16 43 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.34 11.01 8.15 -89.69 -0.73 10.28 16 45 H 0.11 2.96 8.13 -2.39 -0.02 2.94 16 46 H 0.07 1.87 8.09 -2.39 -0.02 1.85 16 47 H 0.40 18.60 7.90 -92.71 -0.73 17.87 16 48 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 49 H 0.05 1.52 7.97 -2.38 -0.02 1.50 16 50 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -74.60 404.37 -1.01 -75.61 By element: Atomic # 1 Polarization: 37.68 SS G_CDS: -0.52 Total: 37.16 kcal Atomic # 6 Polarization: 12.15 SS G_CDS: 6.17 Total: 18.32 kcal Atomic # 7 Polarization: -107.99 SS G_CDS: -6.95 Total: -114.94 kcal Atomic # 8 Polarization: -58.93 SS G_CDS: -1.75 Total: -60.68 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal Total: -74.60 -1.01 -75.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662520141.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.236 kcal (2) G-P(sol) polarization free energy of solvation -74.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds