Wall clock time and date at job start Tue Mar 31 2020 23:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50698 * 119.99890 * 2 1 4 4 C 1.52997 * 109.47093 * 120.00131 * 3 2 1 5 5 O 1.42902 * 109.47143 * 0.02562 * 3 2 1 6 6 C 1.53003 * 109.47153 * 240.00126 * 3 2 1 7 7 C 1.50699 * 109.46842 * 60.11923 * 6 3 2 8 8 O 1.21276 * 120.00632 * 354.33984 * 7 6 3 9 9 N 1.34779 * 119.99358 * 174.34056 * 7 6 3 10 10 C 1.47022 * 125.65094 * 359.97377 * 9 7 6 11 11 C 1.54328 * 107.27092 * 178.97901 * 10 9 7 12 12 C 1.55159 * 102.94149 * 337.80898 * 11 10 9 13 13 H 1.09006 * 110.99966 * 277.42632 * 12 11 10 14 14 C 1.52994 * 111.03660 * 153.59124 * 12 11 10 15 15 N 1.46910 * 109.47213 * 72.78367 * 14 12 11 16 16 C 1.46898 * 110.99896 * 179.97438 * 15 14 12 17 17 C 1.50707 * 109.46697 * 179.97438 * 16 15 14 18 18 O 1.21286 * 120.00117 * 0.02562 * 17 16 15 19 19 N 1.34775 * 119.99753 * 180.02562 * 17 16 15 20 20 C 1.37090 * 119.99931 * 180.02562 * 19 17 16 21 21 H 1.08000 * 120.00411 * 0.02562 * 20 19 17 22 22 C 1.38960 * 119.99930 * 180.02562 * 20 19 17 23 23 N 1.31407 * 119.99791 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99730 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47038 * 90.00251 * 24 22 20 26 26 H 1.48502 * 109.47021 * 209.99564 * 24 22 20 27 27 H 1.48497 * 109.47652 * 330.00255 * 24 22 20 28 28 C 1.47431 * 125.64727 * 180.02562 * 9 7 6 29 29 H 1.07995 * 120.00165 * 359.97438 * 1 2 3 30 30 H 1.08008 * 119.99922 * 180.02562 * 1 2 3 31 31 H 1.08004 * 119.99948 * 180.02562 * 2 1 3 32 32 H 1.08996 * 109.47270 * 184.93885 * 4 3 2 33 33 H 1.09010 * 109.47015 * 304.93578 * 4 3 2 34 34 H 1.08999 * 109.47448 * 64.93297 * 4 3 2 35 35 H 0.96701 * 113.99717 * 300.00026 * 5 3 2 36 36 H 1.08996 * 109.46445 * 300.11986 * 6 3 2 37 37 H 1.08996 * 109.46719 * 180.12148 * 6 3 2 38 38 H 1.09000 * 109.88172 * 298.39507 * 10 9 7 39 39 H 1.08994 * 109.88174 * 59.56041 * 10 9 7 40 40 H 1.08996 * 110.71969 * 96.16784 * 11 10 9 41 41 H 1.09000 * 110.71899 * 219.44702 * 11 10 9 42 42 H 1.09004 * 109.47259 * 192.77749 * 14 12 11 43 43 H 1.08998 * 109.47294 * 312.78432 * 14 12 11 44 44 H 1.00900 * 110.99645 * 303.95347 * 15 14 12 45 45 H 1.08998 * 109.47410 * 299.99997 * 16 15 14 46 46 H 1.08998 * 109.46900 * 60.00218 * 16 15 14 47 47 H 0.96998 * 119.99837 * 359.97438 * 19 17 16 48 48 H 0.97004 * 119.99360 * 180.02562 * 23 22 20 49 49 H 1.09000 * 110.36206 * 322.93141 * 28 9 7 50 50 H 1.08998 * 110.36574 * 85.13770 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3861 1.2492 5 8 1.1349 2.3913 0.0006 6 6 2.9431 1.3862 -1.2493 7 6 2.0764 1.3093 -2.4797 8 8 0.8871 1.0976 -2.3715 9 7 2.6230 1.4758 -3.7003 10 6 4.0434 1.7378 -3.9747 11 6 4.2048 1.8293 -5.5068 12 6 2.9693 1.0525 -6.0334 13 1 3.1555 -0.0216 -6.0369 14 6 2.5662 1.5408 -7.4262 15 7 3.5451 1.0665 -8.4137 16 6 3.1892 1.5168 -9.7659 17 6 4.2140 1.0128 -10.7491 18 8 5.1486 0.3438 -10.3616 19 7 4.0921 1.3053 -12.0591 20 6 5.0240 0.8464 -12.9536 21 1 5.8558 0.2500 -12.6087 22 6 4.8986 1.1485 -14.3041 23 7 3.8863 1.8737 -14.7239 24 14 6.1689 0.5237 -15.5229 25 1 5.7506 -0.8056 -16.0360 26 1 6.2804 1.4785 -16.6548 27 1 7.4854 0.4014 -14.8468 28 6 1.8953 1.4265 -4.9816 29 1 -0.5400 0.9352 0.0004 30 1 -0.5400 -0.9354 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 3.4205 2.3649 1.2946 33 1 2.3276 1.2406 2.1371 34 1 3.7078 0.6106 1.2061 35 1 0.5433 2.4033 -0.7642 36 1 3.6500 0.5565 -1.2503 37 1 3.4897 2.3292 -1.2481 38 1 4.3426 2.6790 -3.5136 39 1 4.6526 0.9220 -3.5858 40 1 4.1764 2.8679 -5.8362 41 1 5.1286 1.3472 -5.8267 42 1 1.5796 1.1508 -7.6765 43 1 2.5395 2.6304 -7.4356 44 1 4.4783 1.3611 -8.1680 45 1 2.2069 1.1265 -10.0321 46 1 3.1664 2.6063 -9.7917 47 1 3.3445 1.8400 -12.3690 48 1 3.7986 2.0843 -15.6667 49 1 1.1169 0.6643 -4.9466 50 1 1.4617 2.4002 -5.2093 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662618942.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:19 Heat of formation + Delta-G solvation = -101.291135 kcal Electronic energy + Delta-G solvation = -28933.591378 eV Core-core repulsion = 24768.122374 eV Total energy + Delta-G solvation = -4165.469004 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.79436 -39.10170 -38.26917 -37.34060 -35.42807 -33.89995 -33.29346 -32.36908 -31.35303 -31.16365 -29.82770 -28.77373 -27.03111 -24.90710 -23.61733 -23.12225 -22.58442 -20.57964 -20.07589 -19.49739 -19.24760 -17.91838 -17.63719 -17.13660 -16.87479 -16.23782 -16.01913 -15.58588 -15.21794 -14.91513 -14.64385 -14.46321 -14.23945 -14.00376 -13.73013 -13.41011 -13.38460 -13.24625 -12.93310 -12.80143 -12.75205 -12.52564 -12.41752 -12.27239 -12.07680 -12.01098 -11.60125 -11.54903 -11.34673 -11.25416 -11.07352 -10.95988 -10.87980 -10.44203 -10.41348 -10.30424 -10.23934 -9.53295 -9.38003 -8.98323 -8.50603 -8.11411 -7.98572 -6.44019 -3.84914 2.12987 2.27197 2.58909 3.16253 3.25066 3.30619 3.87314 3.88857 3.93753 4.08287 4.23754 4.25058 4.34296 4.44191 4.46776 4.71161 4.87949 4.93328 4.98846 5.04164 5.04734 5.09388 5.14679 5.19682 5.23301 5.33003 5.39876 5.42388 5.43354 5.50008 5.57674 5.63514 5.72202 5.75529 5.78304 5.84640 5.92565 5.94845 6.09447 6.23921 6.39562 6.58461 7.11738 7.14956 7.39185 7.52971 7.60171 7.80029 8.03823 8.58689 9.15464 9.51795 10.03032 10.73647 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.039310 B = 0.001518 C = 0.001497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.121475 B =18439.350749 C =18704.025249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.192 4.192 3 C 0.177 3.823 4 C -0.135 4.135 5 O -0.561 6.561 6 C -0.163 4.163 7 C 0.530 3.470 8 O -0.538 6.538 9 N -0.617 5.617 10 C 0.100 3.900 11 C -0.133 4.133 12 C -0.097 4.097 13 H 0.097 0.903 14 C 0.070 3.930 15 N -0.668 5.668 16 C 0.050 3.950 17 C 0.440 3.560 18 O -0.584 6.584 19 N -0.563 5.563 20 C -0.301 4.301 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.931 3.069 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.111 3.889 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.108 0.892 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.385 0.615 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.075 0.925 43 H 0.031 0.969 44 H 0.349 0.651 45 H 0.087 0.913 46 H 0.043 0.957 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.081 0.919 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.760 2.228 27.819 28.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.210 4.210 3 C 0.136 3.864 4 C -0.192 4.192 5 O -0.371 6.371 6 C -0.203 4.203 7 C 0.319 3.681 8 O -0.416 6.416 9 N -0.351 5.351 10 C -0.023 4.023 11 C -0.170 4.170 12 C -0.117 4.117 13 H 0.115 0.885 14 C -0.060 4.060 15 N -0.300 5.300 16 C -0.082 4.082 17 C 0.226 3.774 18 O -0.468 6.468 19 N -0.200 5.200 20 C -0.430 4.430 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.542 5.542 24 Si 0.758 3.242 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.012 4.012 29 H 0.119 0.881 30 H 0.112 0.888 31 H 0.126 0.874 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.237 0.763 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.109 0.891 42 H 0.094 0.906 43 H 0.049 0.951 44 H 0.168 0.832 45 H 0.105 0.895 46 H 0.061 0.939 47 H 0.226 0.774 48 H 0.081 0.919 49 H 0.099 0.901 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.832 1.256 28.487 28.771 hybrid contribution 0.162 0.796 -1.596 1.791 sum -3.671 2.052 26.890 27.217 Atomic orbital electron populations 1.23636 0.95968 1.01719 0.97225 1.23220 0.96835 0.97703 1.03267 1.19819 0.88105 0.85366 0.93109 1.21710 0.98729 1.02649 0.96103 1.86445 1.50905 1.48775 1.50981 1.22436 0.99698 1.05233 0.92947 1.20298 0.88462 0.75948 0.83365 1.90676 1.15841 1.49263 1.85855 1.48546 1.09827 1.70819 1.05864 1.22101 0.81820 1.01078 0.97320 1.22777 0.99759 1.01523 0.92984 1.22391 0.94122 1.01765 0.93406 0.88460 1.21851 0.97044 0.96913 0.90184 1.60040 1.05786 1.63847 1.00353 1.21674 0.99619 0.97659 0.89264 1.19800 0.88351 0.85923 0.83373 1.90517 1.34936 1.42873 1.78513 1.41863 1.25550 1.47357 1.05198 1.19708 1.05576 1.30481 0.87247 0.87906 1.25268 0.97817 0.96945 0.97891 1.69613 1.29957 1.38018 1.16657 0.85849 0.80546 0.78362 0.79475 1.20377 1.20935 1.19435 1.22242 0.95191 1.01976 0.81749 0.88108 0.88838 0.87365 0.91562 0.91424 0.90968 0.76319 0.87820 0.88144 0.91237 0.91109 0.90437 0.89106 0.90626 0.95137 0.83184 0.89529 0.93858 0.77448 0.91855 0.90100 0.91264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 12.60 29.01 0.37 -1.02 16 2 C -0.19 -1.67 7.47 -36.03 -0.27 -1.94 16 3 C 0.18 1.43 1.08 -91.77 -0.10 1.33 16 4 C -0.13 -0.83 8.82 37.16 0.33 -0.50 16 5 O -0.56 -5.64 11.92 -51.73 -0.62 -6.25 16 6 C -0.16 -1.12 4.17 -27.88 -0.12 -1.24 16 7 C 0.53 5.05 7.33 -10.98 -0.08 4.97 16 8 O -0.54 -6.49 12.22 -10.94 -0.13 -6.63 16 9 N -0.62 -5.38 3.33 -170.52 -0.57 -5.94 16 10 C 0.10 0.66 6.48 -3.06 -0.02 0.64 16 11 C -0.13 -1.01 5.90 -24.89 -0.15 -1.16 16 12 C -0.10 -0.90 3.25 -88.47 -0.29 -1.19 16 13 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 14 C 0.07 0.76 5.19 -3.82 -0.02 0.74 16 15 N -0.67 -10.01 6.13 -115.05 -0.70 -10.71 16 16 C 0.05 0.86 6.17 -4.97 -0.03 0.82 16 17 C 0.44 10.18 7.82 -10.98 -0.09 10.10 16 18 O -0.58 -15.56 15.78 5.55 0.09 -15.47 16 19 N -0.56 -14.09 5.29 -10.96 -0.06 -14.14 16 20 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 21 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.29 13.05 55.50 0.72 -23.57 16 24 Si 0.93 20.84 29.55 -169.99 -5.02 15.82 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 27 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 28 C 0.11 1.02 6.37 -2.53 -0.02 1.00 16 29 H 0.10 0.98 6.41 -52.49 -0.34 0.65 16 30 H 0.09 0.78 8.06 -52.48 -0.42 0.35 16 31 H 0.11 0.82 8.06 -52.48 -0.42 0.40 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.45 8.14 -51.92 -0.42 0.02 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.38 3.91 5.79 45.56 0.26 4.17 16 36 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.10 0.58 8.13 -51.93 -0.42 0.15 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.08 0.58 7.92 -51.93 -0.41 0.16 16 41 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.03 0.31 7.97 -51.93 -0.41 -0.11 16 44 H 0.35 5.30 7.94 -39.29 -0.31 4.99 16 45 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 46 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 48 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 49 H 0.08 0.83 8.04 -51.93 -0.42 0.41 16 50 H 0.07 0.62 8.04 -51.93 -0.42 0.20 16 LS Contribution 405.67 15.07 6.11 6.11 Total: -1.00 -32.67 405.67 -8.69 -41.37 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: -7.80 Total: 14.81 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: -0.72 Total: 4.62 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: -0.61 Total: -54.37 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.66 Total: -28.35 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.67 -8.69 -41.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662618942.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.924 kcal (2) G-P(sol) polarization free energy of solvation -32.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds