Wall clock time and date at job start Tue Mar 31 2020 23:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50703 * 119.99943 * 2 1 4 4 C 1.53001 * 109.46897 * 239.99870 * 3 2 1 5 5 O 1.42895 * 109.47047 * 0.02562 * 3 2 1 6 6 C 1.52998 * 109.46891 * 120.00258 * 3 2 1 7 7 C 1.50703 * 109.46891 * 180.02562 * 6 3 2 8 8 O 1.21279 * 120.00097 * 359.97438 * 7 6 3 9 9 N 1.34776 * 119.99758 * 179.97438 * 7 6 3 10 10 C 1.47020 * 125.65281 * 359.95767 * 9 7 6 11 11 C 1.54316 * 107.27568 * 178.97789 * 10 9 7 12 12 C 1.55158 * 102.94139 * 337.80546 * 11 10 9 13 13 H 1.08996 * 111.03958 * 277.41298 * 12 11 10 14 14 C 1.52994 * 111.00727 * 153.57557 * 12 11 10 15 15 N 1.46900 * 109.47154 * 72.80327 * 14 12 11 16 16 C 1.46901 * 111.00288 * 179.97438 * 15 14 12 17 17 C 1.50696 * 109.47461 * 179.97438 * 16 15 14 18 18 O 1.21293 * 119.99918 * 0.02562 * 17 16 15 19 19 N 1.34775 * 120.00555 * 179.97438 * 17 16 15 20 20 C 1.37095 * 120.00328 * 180.02562 * 19 17 16 21 21 H 1.07995 * 120.00057 * 0.02562 * 20 19 17 22 22 C 1.38950 * 119.99783 * 180.02562 * 20 19 17 23 23 N 1.31412 * 120.00224 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99670 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47385 * 59.99811 * 24 22 20 26 26 H 1.48503 * 109.46743 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47082 * 299.99186 * 24 22 20 28 28 C 1.47422 * 125.64527 * 180.02562 * 9 7 6 29 29 H 1.07993 * 120.00134 * 180.02562 * 1 2 3 30 30 H 1.07999 * 119.99732 * 359.97438 * 1 2 3 31 31 H 1.07999 * 119.99732 * 180.02562 * 2 1 3 32 32 H 1.08997 * 109.47430 * 300.00532 * 4 3 2 33 33 H 1.09004 * 109.46716 * 60.00241 * 4 3 2 34 34 H 1.09001 * 109.47198 * 179.97438 * 4 3 2 35 35 H 0.96690 * 114.00395 * 59.99900 * 5 3 2 36 36 H 1.09004 * 109.47344 * 59.99805 * 6 3 2 37 37 H 1.09000 * 109.46964 * 299.99421 * 6 3 2 38 38 H 1.09000 * 109.88493 * 59.55540 * 10 9 7 39 39 H 1.09005 * 110.00581 * 298.46850 * 10 9 7 40 40 H 1.09003 * 110.72312 * 219.44382 * 11 10 9 41 41 H 1.09003 * 110.72351 * 96.16743 * 11 10 9 42 42 H 1.08999 * 109.47471 * 192.80466 * 14 12 11 43 43 H 1.09004 * 109.46988 * 312.80503 * 14 12 11 44 44 H 1.00898 * 111.00216 * 303.95218 * 15 14 12 45 45 H 1.09000 * 109.47316 * 300.00574 * 16 15 14 46 46 H 1.09006 * 109.46973 * 60.00379 * 16 15 14 47 47 H 0.97006 * 119.99720 * 0.02562 * 19 17 16 48 48 H 0.96999 * 119.99914 * 180.02562 * 23 22 20 49 49 H 1.08998 * 110.36873 * 85.25268 * 28 9 7 50 50 H 1.09005 * 110.36491 * 322.92676 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.9432 1.3861 -1.2492 5 8 1.1350 2.3912 0.0006 6 6 2.9432 1.3861 1.2492 7 6 3.6962 2.6915 1.2495 8 8 3.5446 3.4793 0.3399 9 7 4.5381 2.9835 2.2607 10 6 4.8143 2.1241 3.4211 11 6 5.8542 2.8555 4.2958 12 6 6.5283 3.8291 3.2933 13 1 7.3058 3.3242 2.7201 14 6 7.0916 5.0554 4.0143 15 7 8.2922 4.6713 4.7686 16 6 8.8622 5.8265 5.4749 17 6 10.0889 5.3946 6.2361 18 8 10.4530 4.2384 6.1941 19 7 10.7822 6.2933 6.9629 20 6 11.8985 5.9005 7.6550 21 1 12.2227 4.8710 7.6176 22 6 12.6129 6.8269 8.4047 23 7 12.2188 8.0798 8.4499 24 14 14.1344 6.2918 9.3472 25 1 15.1385 5.7474 8.3983 26 1 14.7107 7.4597 10.0609 27 1 13.7637 5.2434 10.3313 28 6 5.3336 4.2183 2.3869 29 1 -0.5400 -0.9352 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 3.6514 0.5576 -1.2493 33 1 2.3164 1.3284 -2.1392 34 1 3.4879 2.3303 -1.2495 35 1 0.5440 2.4030 0.7658 36 1 3.6515 0.5576 1.2492 37 1 2.3165 1.3284 2.1392 38 1 5.2176 1.1682 3.0869 39 1 3.8993 1.9614 3.9908 40 1 6.5825 2.1517 4.6989 41 1 5.3639 3.4067 5.0983 42 1 7.3516 5.8198 3.2820 43 1 6.3420 5.4496 4.7005 44 1 8.0912 3.9185 5.4095 45 1 9.1345 6.5959 4.7525 46 1 8.1251 6.2264 6.1712 47 1 10.4913 7.2181 6.9963 48 1 12.7177 8.7266 8.9730 49 1 4.7418 5.0045 2.8556 50 1 5.6893 4.5420 1.4087 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662618943.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:24 Heat of formation + Delta-G solvation = -97.196938 kcal Electronic energy + Delta-G solvation = -28785.853955 eV Core-core repulsion = 24620.562489 eV Total energy + Delta-G solvation = -4165.291467 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.66448 -39.07580 -38.27319 -37.47156 -35.39208 -33.88185 -33.41582 -32.25723 -31.47574 -31.18923 -29.73464 -28.61714 -26.98988 -24.90999 -23.71286 -23.08707 -22.70866 -20.53447 -20.07083 -19.49489 -19.23125 -17.90531 -17.63565 -17.03885 -16.89788 -16.13942 -15.82216 -15.59442 -15.30382 -15.06451 -14.64256 -14.49808 -14.33738 -13.99171 -13.75825 -13.49138 -13.37509 -13.18960 -12.97051 -12.75617 -12.64429 -12.51132 -12.37385 -12.05903 -12.02106 -11.82732 -11.58052 -11.53227 -11.47499 -11.24177 -11.04309 -10.92268 -10.84298 -10.59462 -10.45288 -10.22571 -9.93763 -9.79413 -9.51320 -8.88554 -8.48964 -8.09407 -7.97392 -6.42823 -3.83843 1.72168 2.39662 2.67200 3.19183 3.25091 3.29317 3.82566 3.89198 3.98180 4.10541 4.24336 4.27459 4.29871 4.44830 4.53192 4.64130 4.77850 4.80583 4.96419 5.01697 5.07715 5.11971 5.21265 5.23397 5.24828 5.35379 5.36910 5.46806 5.53633 5.54718 5.60792 5.66921 5.70898 5.77552 5.87988 5.95864 5.96782 6.03784 6.12054 6.14814 6.24484 6.25502 7.16807 7.24827 7.31542 7.53784 7.62455 7.95571 8.04761 8.59899 9.16455 9.52928 10.04280 10.74772 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.042329 B = 0.001478 C = 0.001458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.328876 B =18935.139539 C =19195.597763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.188 4.188 3 C 0.177 3.823 4 C -0.148 4.148 5 O -0.538 6.538 6 C -0.161 4.161 7 C 0.528 3.472 8 O -0.517 6.517 9 N -0.621 5.621 10 C 0.101 3.899 11 C -0.132 4.132 12 C -0.097 4.097 13 H 0.097 0.903 14 C 0.070 3.930 15 N -0.668 5.668 16 C 0.051 3.949 17 C 0.440 3.560 18 O -0.584 6.584 19 N -0.563 5.563 20 C -0.301 4.301 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.274 1.274 28 C 0.112 3.888 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.116 0.884 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.094 0.906 35 H 0.368 0.632 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.090 0.910 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.030 0.970 44 H 0.349 0.651 45 H 0.087 0.913 46 H 0.043 0.957 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.068 0.932 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.260 -12.728 -12.650 29.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.206 4.206 3 C 0.135 3.865 4 C -0.205 4.205 5 O -0.343 6.343 6 C -0.201 4.201 7 C 0.317 3.683 8 O -0.393 6.393 9 N -0.357 5.357 10 C -0.022 4.022 11 C -0.170 4.170 12 C -0.117 4.117 13 H 0.115 0.885 14 C -0.060 4.060 15 N -0.300 5.300 16 C -0.082 4.082 17 C 0.226 3.774 18 O -0.469 6.469 19 N -0.200 5.200 20 C -0.431 4.431 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.010 4.010 29 H 0.118 0.882 30 H 0.123 0.877 31 H 0.134 0.866 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.112 0.888 35 H 0.215 0.785 36 H 0.120 0.880 37 H 0.112 0.888 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.108 0.892 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.048 0.952 44 H 0.168 0.832 45 H 0.105 0.895 46 H 0.061 0.939 47 H 0.226 0.774 48 H 0.082 0.918 49 H 0.086 0.914 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -22.338 -12.727 -14.235 29.387 hybrid contribution -0.323 0.195 1.993 2.028 sum -22.661 -12.532 -12.242 28.643 Atomic orbital electron populations 1.23887 0.96032 1.02462 0.99286 1.23612 0.96768 0.98753 1.01479 1.19863 0.87987 0.84113 0.94503 1.21945 0.98882 1.04338 0.95308 1.86737 1.50053 1.48878 1.48593 1.22379 1.00346 0.96733 1.00638 1.20087 0.78942 0.88453 0.80826 1.90703 1.63768 1.50186 1.34626 1.48555 1.43924 1.20476 1.22729 1.22053 0.98963 0.94314 0.86871 1.22769 0.97615 0.99100 0.97548 1.22395 0.96411 0.96594 0.96284 0.88455 1.21853 0.91046 0.96072 0.97027 1.60036 1.28609 1.09385 1.31981 1.21672 0.96046 0.93582 0.96907 1.19803 0.86616 0.86826 0.84200 1.90517 1.70809 1.18796 1.66738 1.41859 1.24983 1.10675 1.42440 1.19658 1.02373 0.97023 1.24010 0.87965 1.25261 0.99601 0.94930 0.98076 1.69604 1.40830 1.02171 1.41670 0.85914 0.81023 0.77808 0.79446 1.19876 1.20971 1.19929 1.22219 0.91374 0.86826 1.00628 0.88154 0.87697 0.86578 0.91805 0.92112 0.88781 0.78518 0.87999 0.88793 0.91268 0.91514 0.89177 0.90510 0.90619 0.95171 0.83205 0.89527 0.93879 0.77444 0.91806 0.91412 0.90144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.97 13.93 29.01 0.40 -0.57 16 2 C -0.19 -1.11 8.77 -36.03 -0.32 -1.43 16 3 C 0.18 1.37 0.94 -91.77 -0.09 1.29 16 4 C -0.15 -1.33 8.50 37.16 0.32 -1.02 16 5 O -0.54 -5.01 10.84 -53.50 -0.58 -5.59 16 6 C -0.16 -1.08 4.12 -27.88 -0.11 -1.20 16 7 C 0.53 5.40 7.41 -10.98 -0.08 5.32 16 8 O -0.52 -7.21 13.21 -12.71 -0.17 -7.38 16 9 N -0.62 -5.70 3.33 -170.51 -0.57 -6.27 16 10 C 0.10 0.69 6.49 -3.07 -0.02 0.67 16 11 C -0.13 -1.04 5.90 -24.90 -0.15 -1.19 16 12 C -0.10 -0.93 3.25 -88.46 -0.29 -1.22 16 13 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 14 C 0.07 0.78 5.18 -3.83 -0.02 0.76 16 15 N -0.67 -10.11 6.13 -115.06 -0.70 -10.81 16 16 C 0.05 0.86 6.17 -4.98 -0.03 0.83 16 17 C 0.44 10.23 7.82 -10.99 -0.09 10.14 16 18 O -0.58 -15.62 15.78 5.55 0.09 -15.53 16 19 N -0.56 -14.13 5.29 -10.97 -0.06 -14.19 16 20 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 21 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 22 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 23 N -0.90 -24.35 13.05 55.50 0.72 -23.62 16 24 Si 0.93 20.88 29.55 -169.99 -5.02 15.86 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 28 C 0.11 1.09 6.38 -2.52 -0.02 1.07 16 29 H 0.10 0.42 8.06 -52.49 -0.42 0.00 16 30 H 0.10 0.56 6.41 -52.49 -0.34 0.22 16 31 H 0.12 0.55 8.06 -52.49 -0.42 0.12 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.09 1.10 5.51 -51.93 -0.29 0.82 16 35 H 0.37 2.15 8.05 45.56 0.37 2.51 16 36 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.08 0.58 7.91 -51.93 -0.41 0.17 16 42 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.03 0.31 7.97 -51.93 -0.41 -0.10 16 44 H 0.35 5.35 7.94 -39.29 -0.31 5.03 16 45 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 46 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 48 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 49 H 0.07 0.64 8.04 -51.93 -0.42 0.23 16 50 H 0.08 0.87 8.04 -51.93 -0.42 0.45 16 LS Contribution 407.45 15.07 6.14 6.14 Total: -1.00 -34.17 407.45 -8.43 -42.60 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: -7.56 Total: 13.31 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: -0.73 Total: 5.49 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: -0.61 Total: -54.90 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -0.66 Total: -28.50 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.17 -8.43 -42.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662618943.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.598 kcal (2) G-P(sol) polarization free energy of solvation -34.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds