Wall clock time and date at job start Tue Mar 31 2020 23:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 119.99606 * 2 1 4 4 C 1.52995 * 109.47117 * 120.00345 * 3 2 1 5 5 O 1.42904 * 109.47309 * 359.97438 * 3 2 1 6 6 C 1.53004 * 109.47189 * 239.99937 * 3 2 1 7 7 C 1.50702 * 109.46863 * 60.12187 * 6 3 2 8 8 O 1.21283 * 120.00247 * 354.34361 * 7 6 3 9 9 N 1.34777 * 120.00070 * 174.33876 * 7 6 3 10 10 C 1.47023 * 125.64636 * 359.95910 * 9 7 6 11 11 C 1.54325 * 107.27190 * 181.09297 * 10 9 7 12 12 C 1.55153 * 102.94003 * 22.19460 * 11 10 9 13 13 H 1.09001 * 111.03717 * 82.58776 * 12 11 10 14 14 C 1.52999 * 111.00403 * 206.42131 * 12 11 10 15 15 N 1.46899 * 109.47539 * 287.19855 * 14 12 11 16 16 C 1.46899 * 111.00363 * 180.02562 * 15 14 12 17 17 C 1.50696 * 109.46991 * 179.97438 * 16 15 14 18 18 O 1.21291 * 120.00312 * 359.97438 * 17 16 15 19 19 N 1.34782 * 119.99672 * 179.97438 * 17 16 15 20 20 C 1.37103 * 119.99629 * 179.97438 * 19 17 16 21 21 H 1.07994 * 120.00496 * 359.73370 * 20 19 17 22 22 C 1.38948 * 119.99621 * 179.97438 * 20 19 17 23 23 N 1.31408 * 120.00033 * 180.02562 * 22 20 19 24 24 Si 1.86806 * 120.00382 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47257 * 89.99161 * 24 22 20 26 26 H 1.48496 * 109.47155 * 209.99633 * 24 22 20 27 27 H 1.48505 * 109.46651 * 329.99958 * 24 22 20 28 28 C 1.47420 * 125.65227 * 180.02562 * 9 7 6 29 29 H 1.07999 * 119.99616 * 179.97438 * 1 2 3 30 30 H 1.08002 * 120.00304 * 0.02562 * 1 2 3 31 31 H 1.07992 * 120.00259 * 180.02562 * 2 1 3 32 32 H 1.08997 * 109.47583 * 184.93207 * 4 3 2 33 33 H 1.09002 * 109.47013 * 304.93412 * 4 3 2 34 34 H 1.09003 * 109.47251 * 64.93007 * 4 3 2 35 35 H 0.96696 * 113.99718 * 299.99781 * 5 3 2 36 36 H 1.08993 * 109.47203 * 300.12692 * 6 3 2 37 37 H 1.09004 * 109.47253 * 180.12073 * 6 3 2 38 38 H 1.09001 * 109.88847 * 300.51481 * 10 9 7 39 39 H 1.09000 * 109.88405 * 61.52381 * 10 9 7 40 40 H 1.08999 * 110.71878 * 263.83213 * 11 10 9 41 41 H 1.09001 * 110.72021 * 140.55913 * 11 10 9 42 42 H 1.08998 * 109.47455 * 167.19481 * 14 12 11 43 43 H 1.09004 * 109.47047 * 47.19601 * 14 12 11 44 44 H 1.00901 * 110.99774 * 56.03936 * 15 14 12 45 45 H 1.09002 * 109.47103 * 59.99585 * 16 15 14 46 46 H 1.08999 * 109.46765 * 300.00004 * 16 15 14 47 47 H 0.97000 * 120.00512 * 0.02562 * 19 17 16 48 48 H 0.96998 * 120.00180 * 180.02562 * 23 22 20 49 49 H 1.08999 * 110.36801 * 36.99402 * 28 9 7 50 50 H 1.09009 * 110.45610 * 274.72410 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.9431 1.3862 1.2492 5 8 1.1347 2.3913 -0.0006 6 6 2.9431 1.3863 -1.2493 7 6 2.0763 1.3094 -2.4797 8 8 0.8870 1.0977 -2.3715 9 7 2.6228 1.4759 -3.7004 10 6 4.0432 1.7383 -3.9748 11 6 4.1954 1.8832 -5.5037 12 6 2.7608 2.2566 -5.9618 13 1 2.5760 3.3237 -5.8383 14 6 2.5176 1.8248 -7.4092 15 7 3.2610 2.7097 -8.3159 16 6 3.0503 2.3246 -9.7177 17 6 3.8262 3.2531 -10.6159 18 8 4.4892 4.1481 -10.1355 19 7 3.7835 3.0891 -11.9530 20 6 4.4891 3.9343 -12.7701 21 1 5.0756 4.7340 -12.3427 22 6 4.4455 3.7649 -14.1485 23 7 5.1221 4.5745 -14.9317 24 14 3.4250 2.3862 -14.8884 25 1 2.0489 2.8768 -15.1545 26 1 4.0459 1.9389 -16.1611 27 1 3.3690 1.2468 -13.9376 28 6 1.8952 1.4266 -4.9816 29 1 -0.5399 -0.9353 -0.0004 30 1 -0.5401 0.9353 -0.0004 31 1 1.8500 -0.9352 -0.0004 32 1 3.4205 2.3650 1.2945 33 1 2.3276 1.2407 2.1370 34 1 3.7077 0.6106 1.2061 35 1 0.5438 2.4030 -0.7659 36 1 3.6499 0.5566 -1.2504 37 1 3.4896 2.3294 -1.2482 38 1 4.3518 2.6605 -3.4824 39 1 4.6497 0.9064 -3.6168 40 1 4.5099 0.9403 -5.9510 41 1 4.8978 2.6802 -5.7475 42 1 1.4526 1.8871 -7.6330 43 1 2.8576 0.7979 -7.5441 44 1 4.2437 2.7190 -8.0868 45 1 1.9889 2.3908 -9.9571 46 1 3.3936 1.3012 -9.8688 47 1 3.2531 2.3737 -12.3372 48 1 5.0913 4.4565 -15.8940 49 1 0.9075 1.8751 -4.8745 50 1 1.8079 0.3977 -5.3308 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662618945.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:30 Heat of formation + Delta-G solvation = -120.632204 kcal Electronic energy + Delta-G solvation = -28993.810027 eV Core-core repulsion = 24827.502331 eV Total energy + Delta-G solvation = -4166.307696 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.47542 -40.32619 -39.67422 -38.13528 -36.61577 -35.84697 -33.98268 -33.75449 -33.18468 -31.96638 -30.49742 -29.55232 -28.36603 -26.34375 -24.57334 -23.96897 -23.22641 -21.43634 -21.16966 -20.72715 -20.23097 -20.15873 -18.29484 -18.04779 -17.74281 -17.35248 -16.98214 -16.81241 -16.62155 -16.04299 -15.82840 -15.46084 -15.24826 -15.04668 -14.87228 -14.68811 -14.37776 -14.24620 -13.99160 -13.70785 -13.55237 -13.43180 -13.38167 -13.23343 -13.06837 -12.99056 -12.88726 -12.71410 -12.63564 -12.40549 -12.11289 -11.97124 -11.93333 -11.68039 -11.61354 -11.50498 -11.11856 -10.98310 -10.43234 -10.24131 -10.04591 -9.65743 -9.30927 -8.40737 -6.01708 1.30681 1.36570 1.45185 1.46165 1.58870 1.93959 1.96739 2.23607 2.73142 3.15795 3.27985 3.32770 3.47196 3.60706 3.75827 3.80609 3.87990 3.98357 4.17810 4.28629 4.33173 4.36733 4.41852 4.42740 4.45493 4.53705 4.56875 4.63964 4.66638 4.75034 4.80229 4.86751 4.90459 4.93972 4.98695 5.12246 5.15976 5.23606 5.29093 5.37178 5.53283 5.71454 5.91229 5.92905 6.05642 6.42510 6.46739 6.60491 6.68458 6.88828 7.11403 7.40700 7.97249 8.76840 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.035682 B = 0.001586 C = 0.001550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.513699 B =17652.520056 C =18061.834103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.188 4.188 3 C 0.167 3.833 4 C -0.133 4.133 5 O -0.576 6.576 6 C -0.155 4.155 7 C 0.522 3.478 8 O -0.570 6.570 9 N -0.618 5.618 10 C 0.099 3.901 11 C -0.129 4.129 12 C -0.092 4.092 13 H 0.079 0.921 14 C 0.075 3.925 15 N -0.687 5.687 16 C 0.062 3.938 17 C 0.448 3.552 18 O -0.614 6.614 19 N -0.591 5.591 20 C -0.330 4.330 21 H 0.055 0.945 22 C -0.015 4.015 23 N -0.934 5.934 24 Si 0.965 3.035 25 H -0.259 1.259 26 H -0.276 1.276 27 H -0.230 1.230 28 C 0.115 3.885 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.124 0.876 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.096 0.904 35 H 0.381 0.619 36 H 0.130 0.870 37 H 0.114 0.886 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.051 0.949 44 H 0.347 0.653 45 H 0.113 0.887 46 H 0.079 0.921 47 H 0.390 0.610 48 H 0.279 0.721 49 H 0.065 0.935 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.612 -16.178 28.873 33.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.206 4.206 3 C 0.126 3.874 4 C -0.190 4.190 5 O -0.386 6.386 6 C -0.195 4.195 7 C 0.312 3.688 8 O -0.451 6.451 9 N -0.352 5.352 10 C -0.023 4.023 11 C -0.167 4.167 12 C -0.111 4.111 13 H 0.098 0.902 14 C -0.054 4.054 15 N -0.320 5.320 16 C -0.070 4.070 17 C 0.236 3.764 18 O -0.499 6.499 19 N -0.233 5.233 20 C -0.459 4.459 21 H 0.073 0.927 22 C -0.214 4.214 23 N -0.575 5.575 24 Si 0.785 3.215 25 H -0.183 1.183 26 H -0.201 1.201 27 H -0.153 1.153 28 C -0.008 4.008 29 H 0.117 0.883 30 H 0.106 0.894 31 H 0.141 0.859 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.115 0.885 35 H 0.232 0.768 36 H 0.148 0.852 37 H 0.132 0.868 38 H 0.098 0.902 39 H 0.110 0.890 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.098 0.902 43 H 0.069 0.931 44 H 0.166 0.834 45 H 0.131 0.869 46 H 0.097 0.903 47 H 0.225 0.775 48 H 0.088 0.912 49 H 0.084 0.916 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.933 -15.013 29.678 33.784 hybrid contribution -0.152 -0.973 -1.764 2.020 sum -6.084 -15.985 27.914 32.738 Atomic orbital electron populations 1.23663 0.96590 1.01465 0.98802 1.23446 0.96703 0.98599 1.01845 1.20113 0.88122 0.84515 0.94647 1.21744 0.98774 1.03764 0.94707 1.86440 1.51448 1.49829 1.50926 1.22435 0.99297 1.06967 0.90769 1.20810 0.88375 0.75429 0.84138 1.90672 1.17287 1.50773 1.86339 1.48627 1.10678 1.70351 1.05503 1.22235 0.80735 1.02569 0.96732 1.22761 0.96598 1.03323 0.94022 1.22232 0.95530 1.00220 0.93161 0.90221 1.21888 0.99324 0.94027 0.90179 1.60001 1.16471 1.54613 1.00910 1.21625 1.01190 0.96038 0.88185 1.21027 0.85068 0.87637 0.82697 1.90542 1.46667 1.37269 1.75383 1.42041 1.45173 1.30238 1.05853 1.19016 1.26672 1.11267 0.88940 0.92661 1.26116 0.98623 1.00983 0.95629 1.69803 1.42696 1.39738 1.05265 0.85365 0.78582 0.78506 0.79055 1.18333 1.20080 1.15281 1.22126 0.95794 1.00305 0.82594 0.88268 0.89399 0.85865 0.91285 0.92263 0.88491 0.76774 0.85248 0.86831 0.90173 0.89018 0.89545 0.89472 0.90174 0.93134 0.83438 0.86948 0.90330 0.77459 0.91169 0.91628 0.90676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.05 12.60 67.78 0.85 -2.19 16 2 C -0.19 -2.91 7.47 25.65 0.19 -2.72 16 3 C 0.17 2.39 1.08 -11.54 -0.01 2.38 16 4 C -0.13 -1.33 8.83 71.98 0.64 -0.69 16 5 O -0.58 -11.62 11.92 -133.16 -1.59 -13.21 16 6 C -0.16 -1.68 4.17 29.85 0.12 -1.56 16 7 C 0.52 8.88 7.33 87.66 0.64 9.52 16 8 O -0.57 -13.26 12.21 12.78 0.16 -13.11 16 9 N -0.62 -9.16 3.33 -811.83 -2.70 -11.86 16 10 C 0.10 0.97 6.48 86.73 0.56 1.54 16 11 C -0.13 -1.56 5.90 31.78 0.19 -1.37 16 12 C -0.09 -1.45 3.25 -9.41 -0.03 -1.48 16 13 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 14 C 0.07 1.31 5.18 86.30 0.45 1.75 16 15 N -0.69 -18.08 6.12 -517.94 -3.17 -21.25 16 16 C 0.06 1.75 6.17 85.56 0.53 2.28 16 17 C 0.45 19.56 7.82 87.65 0.69 20.25 16 18 O -0.61 -33.23 15.78 -3.06 -0.05 -33.28 16 19 N -0.59 -27.25 5.09 -306.98 -1.56 -28.81 16 20 C -0.33 -19.11 10.16 84.04 0.85 -18.26 16 21 H 0.06 3.83 7.39 -2.91 -0.02 3.80 16 22 C -0.01 -0.82 5.50 84.93 0.47 -0.35 16 23 N -0.93 -55.93 13.96 21.66 0.30 -55.62 16 24 Si 0.96 38.13 27.74 68.60 1.90 40.03 16 25 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 26 H -0.28 -10.84 7.11 99.48 0.71 -10.13 16 27 H -0.23 -7.52 6.52 99.48 0.65 -6.87 16 28 C 0.12 1.83 6.38 86.85 0.55 2.38 16 29 H 0.10 1.58 8.06 -2.91 -0.02 1.55 16 30 H 0.09 1.79 6.41 -2.91 -0.02 1.77 16 31 H 0.12 1.47 8.06 -2.91 -0.02 1.45 16 32 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.06 0.69 8.14 -2.39 -0.02 0.68 16 34 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.38 8.11 5.78 -74.06 -0.43 7.68 16 36 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.11 0.99 8.13 -2.38 -0.02 0.97 16 38 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.09 0.91 7.91 -2.39 -0.02 0.89 16 41 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.05 0.72 7.97 -2.39 -0.02 0.70 16 44 H 0.35 9.55 7.94 -89.69 -0.71 8.84 16 45 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 46 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 47 H 0.39 14.74 5.76 -92.71 -0.53 14.21 16 48 H 0.28 15.24 8.31 -92.71 -0.77 14.47 16 49 H 0.07 1.25 8.04 -2.39 -0.02 1.23 16 50 H 0.08 1.10 8.03 -2.38 -0.02 1.08 16 Total: -1.00 -80.16 402.53 -0.80 -80.96 By element: Atomic # 1 Polarization: 45.45 SS G_CDS: -0.78 Total: 44.67 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: 6.69 Total: 11.48 kcal Atomic # 7 Polarization: -110.41 SS G_CDS: -7.13 Total: -117.54 kcal Atomic # 8 Polarization: -58.12 SS G_CDS: -1.48 Total: -59.59 kcal Atomic # 14 Polarization: 38.13 SS G_CDS: 1.90 Total: 40.03 kcal Total: -80.16 -0.80 -80.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662618945.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.676 kcal (2) G-P(sol) polarization free energy of solvation -80.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds