Wall clock time and date at job start Tue Mar 31 2020 23:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50698 * 120.00118 * 2 1 4 4 C 1.53006 * 109.47213 * 240.00465 * 3 2 1 5 5 O 1.42898 * 109.47068 * 0.02562 * 3 2 1 6 6 C 1.53001 * 109.46920 * 120.00414 * 3 2 1 7 7 C 1.50706 * 109.46929 * 180.02562 * 6 3 2 8 8 O 1.21282 * 119.99925 * 359.97438 * 7 6 3 9 9 N 1.34778 * 119.99694 * 180.02562 * 7 6 3 10 10 C 1.46505 * 119.99607 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.50484 * 324.91552 * 10 9 7 12 12 C 1.53111 * 109.50513 * 84.99647 * 10 9 7 13 13 C 1.53120 * 109.16356 * 177.59503 * 12 10 9 14 14 C 1.53044 * 109.27534 * 302.34527 * 13 12 10 15 15 N 1.46843 * 109.52215 * 59.18061 * 14 13 12 16 16 C 1.46898 * 110.99911 * 174.16129 * 15 14 13 17 17 C 1.50696 * 109.47176 * 66.04283 * 16 15 14 18 18 O 1.21288 * 120.00279 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99735 * 179.97438 * 17 16 15 20 20 C 1.37105 * 119.99904 * 179.97438 * 19 17 16 21 21 H 1.07991 * 119.99780 * 0.02562 * 20 19 17 22 22 C 1.38954 * 119.99815 * 179.72596 * 20 19 17 23 23 N 1.31412 * 119.99962 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99686 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47350 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46893 * 120.00104 * 24 22 20 27 27 H 1.48493 * 109.47057 * 240.00163 * 24 22 20 28 28 C 1.46852 * 111.19972 * 298.25561 * 15 14 13 29 29 H 1.07999 * 120.00151 * 359.97438 * 1 2 3 30 30 H 1.08003 * 120.00089 * 180.02562 * 1 2 3 31 31 H 1.07999 * 120.00151 * 180.02562 * 2 1 3 32 32 H 1.08996 * 109.47264 * 299.99672 * 4 3 2 33 33 H 1.08997 * 109.46757 * 59.99966 * 4 3 2 34 34 H 1.08999 * 109.47015 * 179.97438 * 4 3 2 35 35 H 0.96705 * 113.99653 * 59.99992 * 5 3 2 36 36 H 1.09004 * 109.47079 * 60.00254 * 6 3 2 37 37 H 1.08994 * 109.47344 * 299.99983 * 6 3 2 38 38 H 0.96992 * 120.00447 * 359.97438 * 9 7 6 39 39 H 1.09002 * 109.52619 * 57.68584 * 12 10 9 40 40 H 1.09002 * 109.52566 * 297.49836 * 12 10 9 41 41 H 1.08995 * 109.50413 * 182.40884 * 13 12 10 42 42 H 1.08992 * 109.53443 * 62.30342 * 13 12 10 43 43 H 1.09002 * 109.46309 * 299.16288 * 14 13 12 44 44 H 1.08999 * 109.45793 * 179.19306 * 14 13 12 45 45 H 1.09000 * 109.46741 * 306.04225 * 16 15 14 46 46 H 1.09002 * 109.46898 * 186.04215 * 16 15 14 47 47 H 0.97005 * 120.00189 * 0.02562 * 19 17 16 48 48 H 0.97000 * 119.99308 * 179.97438 * 23 22 20 49 49 H 1.08993 * 109.46650 * 181.76015 * 28 15 14 50 50 H 1.09003 * 109.45929 * 301.73297 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3862 -1.2493 5 8 1.1349 2.3912 0.0006 6 6 2.9432 1.3860 1.2492 7 6 3.6962 2.6914 1.2495 8 8 3.5446 3.4792 0.3399 9 7 4.5390 2.9829 2.2602 10 6 5.2706 4.2522 2.2607 11 1 5.5307 4.5228 1.2374 12 6 4.3930 5.3479 2.8720 13 6 5.1862 6.6566 2.9239 14 6 6.4656 6.4401 3.7354 15 7 7.2707 5.3834 3.1097 16 6 8.5695 5.2437 3.7815 17 6 8.3566 4.7469 5.1882 18 8 7.2335 4.5301 5.5914 19 7 9.4145 4.5426 5.9980 20 6 9.2208 4.0911 7.2780 21 1 8.2207 3.8988 7.6372 22 6 10.3117 3.8750 8.1110 23 7 11.5291 4.1039 7.6721 24 14 10.0479 3.2592 9.8547 25 1 8.5946 3.0803 10.1020 26 1 10.7432 1.9589 10.0309 27 1 10.5961 4.2481 10.8172 28 6 6.5476 4.1054 3.0914 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 3.6514 0.5578 -1.2494 33 1 2.3163 1.3285 -2.1392 34 1 3.4877 2.3303 -1.2495 35 1 0.5439 2.4029 0.7659 36 1 3.6515 0.5575 1.2491 37 1 2.3166 1.3282 2.1392 38 1 4.6605 2.3528 2.9874 39 1 4.1001 5.0592 3.8814 40 1 3.5025 5.4858 2.2587 41 1 4.5815 7.4301 3.3973 42 1 5.4454 6.9660 1.9114 43 1 6.2053 6.1447 4.7518 44 1 7.0396 7.3663 3.7622 45 1 9.0698 6.2117 3.8098 46 1 9.1869 4.5315 3.2342 47 1 10.3128 4.7157 5.6755 48 1 12.2906 3.9534 8.2538 49 1 7.1812 3.3359 2.6505 50 1 6.2869 3.8210 4.1109 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665050441.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:27:51 Heat of formation + Delta-G solvation = -97.409807 kcal Electronic energy + Delta-G solvation = -30249.657660 eV Core-core repulsion = 26084.356962 eV Total energy + Delta-G solvation = -4165.300697 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.38933 -39.43545 -38.19144 -37.11644 -34.64327 -33.90451 -33.26224 -32.46418 -31.52502 -31.34944 -29.75183 -27.81072 -27.26986 -24.72433 -23.44666 -22.74463 -22.21193 -20.34338 -19.92697 -19.81505 -19.20124 -17.93152 -17.52783 -16.60867 -16.40640 -16.03128 -15.76109 -15.39257 -14.91050 -14.76434 -14.67710 -14.47494 -14.14555 -13.94980 -13.76440 -13.41588 -13.33973 -12.97626 -12.91464 -12.50344 -12.43760 -12.27216 -11.95054 -11.85558 -11.73754 -11.59107 -11.34070 -11.29152 -11.19279 -10.85721 -10.59046 -10.53581 -10.43579 -10.41679 -10.33068 -10.23579 -9.79444 -9.54931 -9.52545 -9.26818 -8.89666 -8.06977 -7.45700 -6.52146 -3.93719 1.85531 2.67305 3.07373 3.12798 3.19481 3.25657 3.75346 4.02015 4.08481 4.32584 4.45906 4.47070 4.71387 4.86492 4.91157 4.97129 5.07956 5.14248 5.19064 5.24166 5.27805 5.39808 5.42599 5.47929 5.67576 5.73139 5.79257 5.82077 5.85530 5.94344 6.00013 6.11824 6.13118 6.14397 6.20663 6.23474 6.31740 6.38603 6.39127 6.53638 6.60629 6.71915 7.31576 7.42401 7.44581 7.46889 7.57165 7.94286 8.30398 8.48571 9.06033 9.42240 9.92280 10.64267 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015908 B = 0.002267 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.647952 B =12347.224492 C =13346.027345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.187 4.187 3 C 0.178 3.822 4 C -0.148 4.148 5 O -0.538 6.538 6 C -0.168 4.168 7 C 0.514 3.486 8 O -0.519 6.519 9 N -0.726 5.726 10 C 0.153 3.847 11 H 0.088 0.912 12 C -0.126 4.126 13 C -0.109 4.109 14 C 0.039 3.961 15 N -0.509 5.509 16 C 0.042 3.958 17 C 0.405 3.595 18 O -0.595 6.595 19 N -0.555 5.555 20 C -0.302 4.302 21 H 0.103 0.897 22 C 0.024 3.976 23 N -0.897 5.897 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.281 1.281 28 C 0.028 3.972 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.116 0.884 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.095 0.905 35 H 0.368 0.632 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.399 0.601 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.090 0.910 46 H 0.089 0.911 47 H 0.393 0.607 48 H 0.272 0.728 49 H 0.065 0.935 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.686 -5.233 -12.780 20.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.205 4.205 3 C 0.136 3.864 4 C -0.204 4.204 5 O -0.342 6.342 6 C -0.208 4.208 7 C 0.300 3.700 8 O -0.395 6.395 9 N -0.377 5.377 10 C 0.048 3.952 11 H 0.106 0.894 12 C -0.164 4.164 13 C -0.147 4.147 14 C -0.088 4.088 15 N -0.233 5.233 16 C -0.090 4.090 17 C 0.191 3.809 18 O -0.483 6.483 19 N -0.190 5.190 20 C -0.432 4.432 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.537 5.537 24 Si 0.756 3.244 25 H -0.193 1.193 26 H -0.207 1.207 27 H -0.207 1.207 28 C -0.100 4.100 29 H 0.123 0.877 30 H 0.117 0.883 31 H 0.134 0.866 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.114 0.886 35 H 0.215 0.785 36 H 0.120 0.880 37 H 0.113 0.887 38 H 0.232 0.768 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.108 0.892 46 H 0.107 0.893 47 H 0.227 0.773 48 H 0.082 0.918 49 H 0.083 0.917 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.937 -4.537 -14.140 21.063 hybrid contribution 0.296 -1.117 2.606 2.851 sum -14.640 -5.655 -11.535 19.477 Atomic orbital electron populations 1.23870 0.96052 1.02384 0.99563 1.23635 0.96770 0.98859 1.01233 1.19839 0.87973 0.83976 0.94578 1.21943 0.98852 1.04422 0.95217 1.86733 1.50062 1.48902 1.48553 1.22415 1.00563 0.97203 1.00634 1.20345 0.79524 0.88209 0.81950 1.90678 1.63673 1.49973 1.35187 1.46101 1.44983 1.21342 1.25294 1.20898 0.90919 0.82442 1.00913 0.89359 1.21899 0.98434 0.95188 1.00909 1.21483 0.95845 0.96621 1.00788 1.22274 0.93850 0.94299 0.98411 1.62331 1.03389 1.05992 1.51543 1.22045 0.92369 1.02480 0.92075 1.21103 0.85807 0.85580 0.88400 1.90374 1.23131 1.58278 1.76471 1.42078 1.07982 1.56624 1.12311 1.19749 0.95035 1.40522 0.87929 0.87924 1.25304 0.94644 0.97447 1.00456 1.69618 0.98143 1.48428 1.37531 0.85807 0.78703 0.78290 0.81586 1.19261 1.20673 1.20650 1.22567 0.93668 0.91973 1.01824 0.87713 0.88256 0.86639 0.91891 0.92288 0.88626 0.78538 0.88014 0.88745 0.76750 0.91939 0.91942 0.91700 0.91573 0.91322 0.91579 0.89164 0.89270 0.77338 0.91757 0.91650 0.89188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.24 13.93 29.02 0.40 -0.83 16 2 C -0.19 -1.38 8.77 -36.03 -0.32 -1.70 16 3 C 0.18 1.65 0.94 -91.77 -0.09 1.56 16 4 C -0.15 -1.53 8.51 37.16 0.32 -1.21 16 5 O -0.54 -5.81 10.84 -53.50 -0.58 -6.39 16 6 C -0.17 -1.41 4.93 -27.88 -0.14 -1.55 16 7 C 0.51 6.17 7.35 -10.98 -0.08 6.09 16 8 O -0.52 -8.07 12.62 -12.71 -0.16 -8.23 16 9 N -0.73 -8.59 5.08 -53.72 -0.27 -8.86 16 10 C 0.15 2.15 2.62 -67.85 -0.18 1.97 16 11 H 0.09 1.39 7.58 -51.93 -0.39 0.99 16 12 C -0.13 -1.76 5.58 -26.61 -0.15 -1.91 16 13 C -0.11 -1.50 6.09 -26.65 -0.16 -1.66 16 14 C 0.04 0.63 5.09 -3.83 -0.02 0.61 16 15 N -0.51 -8.26 4.86 -236.11 -1.15 -9.40 16 16 C 0.04 0.72 5.86 -4.98 -0.03 0.69 16 17 C 0.41 8.85 7.20 -10.99 -0.08 8.77 16 18 O -0.59 -14.36 11.20 5.55 0.06 -14.30 16 19 N -0.55 -13.36 5.29 -10.96 -0.06 -13.42 16 20 C -0.30 -8.07 9.68 -14.93 -0.14 -8.21 16 21 H 0.10 2.88 7.16 -52.49 -0.38 2.50 16 22 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 23 N -0.90 -23.67 13.05 55.50 0.72 -22.95 16 24 Si 0.93 20.36 29.55 -169.99 -5.02 15.34 16 25 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 26 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 27 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 28 C 0.03 0.44 4.44 -3.83 -0.02 0.42 16 29 H 0.10 0.70 6.41 -52.49 -0.34 0.37 16 30 H 0.10 0.55 8.06 -52.48 -0.42 0.13 16 31 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.10 1.25 5.51 -51.93 -0.29 0.97 16 35 H 0.37 2.73 8.05 45.56 0.37 3.10 16 36 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.40 4.05 8.60 -40.82 -0.35 3.70 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.07 1.31 6.00 -51.93 -0.31 1.00 16 44 H 0.07 0.99 8.06 -51.93 -0.42 0.58 16 45 H 0.09 1.41 8.06 -51.93 -0.42 0.99 16 46 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 47 H 0.39 9.15 7.90 -40.82 -0.32 8.83 16 48 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 49 H 0.07 1.01 8.12 -51.93 -0.42 0.58 16 50 H 0.09 1.68 5.36 -51.93 -0.28 1.40 16 LS Contribution 394.83 15.07 5.95 5.95 Total: -1.00 -31.46 394.83 -8.61 -40.08 By element: Atomic # 1 Polarization: 25.94 SS G_CDS: -7.33 Total: 18.61 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: -0.77 Total: 3.56 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: -0.75 Total: -54.62 kcal Atomic # 8 Polarization: -28.23 SS G_CDS: -0.68 Total: -28.91 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.46 -8.61 -40.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665050441.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.334 kcal (2) G-P(sol) polarization free energy of solvation -31.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds