Wall clock time and date at job start Tue Mar 31 2020 23:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50704 * 119.99836 * 2 1 4 4 C 1.52995 * 109.47181 * 119.99885 * 3 2 1 5 5 O 1.42899 * 109.47255 * 359.97438 * 3 2 1 6 6 C 1.53004 * 109.46809 * 239.99980 * 3 2 1 7 7 C 1.50694 * 109.47169 * 55.88079 * 6 3 2 8 8 O 1.21285 * 120.00284 * 5.65356 * 7 6 3 9 9 N 1.34776 * 119.99792 * 185.64838 * 7 6 3 10 10 C 1.46507 * 120.00155 * 180.02562 * 9 7 6 11 11 H 1.09005 * 109.49973 * 324.92119 * 10 9 7 12 12 C 1.53115 * 109.50368 * 84.99916 * 10 9 7 13 13 C 1.53121 * 109.16079 * 177.59701 * 12 10 9 14 14 C 1.53035 * 109.27898 * 302.34801 * 13 12 10 15 15 N 1.46845 * 109.52497 * 59.17737 * 14 13 12 16 16 C 1.46898 * 111.00066 * 174.16316 * 15 14 13 17 17 C 1.50697 * 109.46901 * 293.95038 * 16 15 14 18 18 O 1.21293 * 120.00252 * 0.02562 * 17 16 15 19 19 N 1.34775 * 120.00064 * 180.02562 * 17 16 15 20 20 C 1.37102 * 120.00250 * 180.02562 * 19 17 16 21 21 H 1.08003 * 119.99754 * 359.97438 * 20 19 17 22 22 C 1.38945 * 120.00111 * 180.02562 * 20 19 17 23 23 N 1.31408 * 120.00299 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00033 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47205 * 90.00159 * 24 22 20 26 26 H 1.48501 * 109.47428 * 210.00528 * 24 22 20 27 27 H 1.48500 * 109.47114 * 330.00366 * 24 22 20 28 28 C 1.46850 * 111.19993 * 298.25981 * 15 14 13 29 29 H 1.07993 * 120.00189 * 0.02562 * 1 2 3 30 30 H 1.08002 * 119.99670 * 179.71902 * 1 2 3 31 31 H 1.07996 * 120.00377 * 180.02562 * 2 1 3 32 32 H 1.09006 * 109.46873 * 64.94261 * 4 3 2 33 33 H 1.08994 * 109.47461 * 184.94147 * 4 3 2 34 34 H 1.08998 * 109.47229 * 304.94931 * 4 3 2 35 35 H 0.96696 * 113.99936 * 300.00569 * 5 3 2 36 36 H 1.09003 * 109.46508 * 175.87805 * 6 3 2 37 37 H 1.08993 * 109.47168 * 295.87540 * 6 3 2 38 38 H 0.97001 * 120.00343 * 0.02562 * 9 7 6 39 39 H 1.08998 * 109.52383 * 297.50449 * 12 10 9 40 40 H 1.09003 * 109.52177 * 57.68951 * 12 10 9 41 41 H 1.08997 * 109.49988 * 62.28975 * 13 12 10 42 42 H 1.09005 * 109.50258 * 182.36612 * 13 12 10 43 43 H 1.08998 * 109.46233 * 179.19595 * 14 13 12 44 44 H 1.09001 * 109.46242 * 299.17194 * 14 13 12 45 45 H 1.08996 * 109.47382 * 53.95758 * 16 15 14 46 46 H 1.09002 * 109.46957 * 173.95511 * 16 15 14 47 47 H 0.97005 * 119.99673 * 359.97438 * 19 17 16 48 48 H 0.96998 * 120.00931 * 179.97438 * 23 22 20 49 49 H 1.09002 * 109.46045 * 301.73005 * 28 15 14 50 50 H 1.08990 * 109.46383 * 181.75453 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.9431 1.3863 1.2492 5 8 1.1349 2.3913 -0.0006 6 6 2.9431 1.3862 -1.2493 7 6 2.0891 1.2049 -2.4776 8 8 0.8831 1.1311 -2.3722 9 7 2.6655 1.1250 -3.6933 10 6 1.8352 0.9494 -4.8875 11 1 0.9794 0.3189 -4.6462 12 6 1.3429 2.3154 -5.3733 13 6 0.5263 2.1287 -6.6550 14 6 1.3916 1.4334 -7.7086 15 7 1.8368 0.1312 -7.1964 16 6 2.5543 -0.6244 -8.2319 17 6 1.6016 -0.9830 -9.3430 18 8 0.4393 -0.6422 -9.2790 19 7 2.0410 -1.6823 -10.4081 20 6 1.1744 -2.0081 -11.4192 21 1 0.1394 -1.7046 -11.3622 22 6 1.6273 -2.7295 -12.5170 23 7 0.7966 -3.0422 -13.4859 24 14 3.4172 -3.2550 -12.6153 25 1 3.5764 -4.5903 -11.9854 26 1 3.8347 -3.3262 -14.0387 27 1 4.2634 -2.2662 -11.9001 28 6 2.6625 0.2882 -5.9923 29 1 -0.5400 0.9352 -0.0004 30 1 -0.5400 -0.9353 -0.0046 31 1 1.8501 -0.9352 -0.0004 32 1 3.7079 0.6107 1.2060 33 1 3.4204 2.3651 1.2946 34 1 2.3277 1.2405 2.1370 35 1 0.5438 2.4030 -0.7658 36 1 3.4318 2.3598 -1.2870 37 1 3.6987 0.6015 -1.2131 38 1 3.6300 1.1838 -3.7776 39 1 0.7172 2.7711 -4.6059 40 1 2.1984 2.9596 -5.5769 41 1 -0.3501 1.5166 -6.4422 42 1 0.2083 3.1019 -7.0290 43 1 0.8086 1.2861 -8.6177 44 1 2.2607 2.0525 -7.9309 45 1 3.3649 -0.0145 -8.6307 46 1 2.9653 -1.5357 -7.7975 47 1 2.9707 -1.9545 -10.4595 48 1 1.1128 -3.5455 -14.2525 49 1 3.5256 0.9128 -6.2227 50 1 3.0025 -0.6908 -5.6548 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665050445.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:27:55 Heat of formation + Delta-G solvation = -93.483582 kcal Electronic energy + Delta-G solvation = -29958.629060 eV Core-core repulsion = 25793.498617 eV Total energy + Delta-G solvation = -4165.130443 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.69065 -39.39546 -38.26036 -37.39734 -34.88009 -33.91951 -33.24143 -32.77283 -31.68551 -31.57895 -29.98189 -28.20821 -27.55164 -24.64976 -23.33786 -22.85867 -22.37243 -20.80042 -20.03590 -19.71631 -19.38143 -18.32682 -17.50691 -17.09451 -16.59734 -16.07972 -15.66098 -15.61534 -15.12062 -14.94503 -14.88584 -14.62155 -14.09313 -13.95320 -13.70818 -13.52576 -13.44181 -13.12597 -12.93908 -12.80340 -12.62293 -12.49691 -12.34778 -12.28369 -12.02748 -11.93714 -11.63965 -11.39346 -11.28055 -11.19891 -10.89128 -10.68536 -10.61863 -10.56084 -10.35734 -10.15552 -9.99153 -9.55054 -9.42351 -9.18737 -8.59713 -8.20042 -8.01472 -6.32547 -3.84033 2.17745 2.36532 2.78984 2.99848 3.04735 3.13107 3.70852 3.92921 3.96570 4.08400 4.30167 4.40227 4.50045 4.63199 4.69124 4.82375 4.94991 5.03067 5.06040 5.11599 5.17775 5.18743 5.22660 5.25681 5.43725 5.46012 5.48326 5.50822 5.60378 5.66547 5.75802 5.76086 5.84461 5.89311 5.90967 6.00638 6.04176 6.21459 6.39885 6.45499 6.48640 6.63586 7.10067 7.21523 7.26339 7.46087 7.56663 7.96958 8.12948 8.58400 8.93731 9.40659 9.81361 10.80526 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023922 B = 0.001995 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.184331 B =14032.116818 C =14288.783964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.197 4.197 3 C 0.179 3.821 4 C -0.135 4.135 5 O -0.562 6.562 6 C -0.169 4.169 7 C 0.516 3.484 8 O -0.533 6.533 9 N -0.725 5.725 10 C 0.149 3.851 11 H 0.100 0.900 12 C -0.127 4.127 13 C -0.111 4.111 14 C 0.049 3.951 15 N -0.511 5.511 16 C 0.045 3.955 17 C 0.452 3.548 18 O -0.557 6.557 19 N -0.591 5.591 20 C -0.304 4.304 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.881 5.881 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 C 0.051 3.949 29 H 0.102 0.898 30 H 0.094 0.906 31 H 0.108 0.892 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.387 0.613 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.398 0.602 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.076 0.924 42 H 0.068 0.932 43 H 0.106 0.894 44 H 0.023 0.977 45 H 0.049 0.951 46 H 0.090 0.910 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.033 0.967 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.984 9.372 25.418 29.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.216 4.216 3 C 0.137 3.863 4 C -0.192 4.192 5 O -0.373 6.373 6 C -0.209 4.209 7 C 0.303 3.697 8 O -0.410 6.410 9 N -0.376 5.376 10 C 0.044 3.956 11 H 0.118 0.882 12 C -0.166 4.166 13 C -0.149 4.149 14 C -0.078 4.078 15 N -0.235 5.235 16 C -0.086 4.086 17 C 0.238 3.762 18 O -0.438 6.438 19 N -0.231 5.231 20 C -0.433 4.433 21 H 0.138 0.862 22 C -0.162 4.162 23 N -0.521 5.521 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 C -0.078 4.078 29 H 0.120 0.880 30 H 0.112 0.888 31 H 0.126 0.874 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.240 0.760 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.231 0.769 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.124 0.876 44 H 0.041 0.959 45 H 0.067 0.933 46 H 0.108 0.892 47 H 0.202 0.798 48 H 0.084 0.916 49 H 0.052 0.948 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.145 9.311 25.983 29.077 hybrid contribution 2.539 -0.342 -1.247 2.849 sum 11.684 8.970 24.736 28.790 Atomic orbital electron populations 1.23677 0.95987 1.01853 0.96723 1.23233 0.96856 0.97724 1.03749 1.19773 0.88096 0.85395 0.92989 1.21712 0.98729 1.02526 0.96250 1.86428 1.50980 1.48639 1.51215 1.22471 0.99872 1.05096 0.93451 1.20582 0.89003 0.75697 0.84426 1.90658 1.14716 1.49478 1.86122 1.46071 1.10580 1.74516 1.06414 1.20960 0.94268 0.97131 0.83222 0.88186 1.21963 0.99951 0.96430 0.98231 1.21503 0.99087 1.00379 0.93956 1.22334 0.98088 0.87497 0.99864 1.61373 1.38907 1.18911 1.04349 1.21866 0.95105 0.98716 0.92941 1.19602 0.89201 0.83793 0.83632 1.90538 1.18104 1.56228 1.78972 1.42211 1.10902 1.50635 1.19308 1.19424 0.95180 1.32456 0.96199 0.86235 1.25039 0.98140 0.97347 0.95680 1.69616 1.34780 1.38676 1.09018 0.86674 0.84660 0.79440 0.78596 1.19615 1.20205 1.19587 1.22254 0.94059 1.00295 0.91189 0.87992 0.88794 0.87413 0.91069 0.91633 0.91475 0.76014 0.87864 0.88088 0.76879 0.91487 0.92453 0.90513 0.91342 0.87556 0.95910 0.93309 0.89201 0.79762 0.91611 0.94844 0.90394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 12.63 29.01 0.37 -1.08 16 2 C -0.20 -1.78 7.43 -36.02 -0.27 -2.04 16 3 C 0.18 1.45 1.08 -91.77 -0.10 1.35 16 4 C -0.13 -0.84 8.83 37.16 0.33 -0.51 16 5 O -0.56 -5.78 11.94 -52.37 -0.63 -6.40 16 6 C -0.17 -1.07 4.99 -27.88 -0.14 -1.20 16 7 C 0.52 4.70 7.27 -10.99 -0.08 4.62 16 8 O -0.53 -6.52 11.62 -11.59 -0.13 -6.65 16 9 N -0.72 -5.82 5.08 -53.72 -0.27 -6.09 16 10 C 0.15 1.62 2.62 -67.85 -0.18 1.44 16 11 H 0.10 1.39 7.58 -51.93 -0.39 1.00 16 12 C -0.13 -1.41 5.58 -26.61 -0.15 -1.56 16 13 C -0.11 -1.45 6.09 -26.65 -0.16 -1.61 16 14 C 0.05 0.75 5.11 -3.84 -0.02 0.73 16 15 N -0.51 -7.81 4.39 -236.12 -1.04 -8.84 16 16 C 0.05 0.73 5.45 -4.98 -0.03 0.70 16 17 C 0.45 10.01 7.46 -10.99 -0.08 9.92 16 18 O -0.56 -14.51 13.92 5.55 0.08 -14.44 16 19 N -0.59 -13.80 5.09 -10.96 -0.06 -13.85 16 20 C -0.30 -8.48 10.16 -14.93 -0.15 -8.63 16 21 H 0.12 3.82 7.39 -52.48 -0.39 3.43 16 22 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 23 N -0.88 -25.55 13.96 55.50 0.77 -24.78 16 24 Si 0.88 19.10 27.74 -169.99 -4.71 14.38 16 25 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 26 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 27 H -0.27 -5.31 6.52 56.52 0.37 -4.94 16 28 C 0.05 0.57 4.93 -3.83 -0.02 0.55 16 29 H 0.10 1.06 6.41 -52.49 -0.34 0.73 16 30 H 0.09 0.87 8.06 -52.49 -0.42 0.44 16 31 H 0.11 0.86 8.06 -52.49 -0.42 0.43 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.39 4.07 5.77 45.56 0.26 4.33 16 36 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.40 2.08 8.60 -40.82 -0.35 1.73 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.11 2.02 5.80 -51.93 -0.30 1.72 16 44 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.05 0.69 8.12 -51.93 -0.42 0.27 16 46 H 0.09 1.25 7.98 -51.93 -0.41 0.83 16 47 H 0.37 7.55 5.76 -40.82 -0.24 7.32 16 48 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 49 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 50 H 0.08 0.81 8.01 -51.93 -0.42 0.39 16 LS Contribution 395.01 15.07 5.95 5.95 Total: -1.00 -33.53 395.01 -8.47 -42.00 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: -7.66 Total: 15.04 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -0.78 Total: 3.68 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: -0.59 Total: -53.57 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.68 Total: -27.49 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -4.71 Total: 14.38 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.53 -8.47 -42.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665050445.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.480 kcal (2) G-P(sol) polarization free energy of solvation -33.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds