Wall clock time and date at job start Tue Mar 31 2020 22:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53011 * 109.46359 * 2 1 4 4 C 1.52994 * 109.47132 * 119.99867 * 2 1 3 5 5 H 1.09003 * 109.47340 * 60.00670 * 4 2 1 6 6 C 1.53002 * 109.47222 * 300.00509 * 4 2 1 7 7 N 1.46504 * 109.47066 * 184.99885 * 6 4 2 8 8 C 1.34771 * 120.00168 * 179.97438 * 7 6 4 9 9 O 1.21617 * 119.99742 * 0.02562 * 8 7 6 10 10 C 1.47103 * 120.00145 * 180.02562 * 8 7 6 11 11 C 1.32090 * 118.87505 * 179.73294 * 10 8 7 12 12 C 1.50267 * 122.57727 * 180.14446 * 11 10 8 13 13 O 1.42890 * 110.14365 * 344.80358 * 12 11 10 14 14 C 1.43270 * 113.10255 * 50.32940 * 13 12 11 15 15 C 1.50414 * 118.87604 * 0.02562 * 10 8 7 16 16 N 1.46906 * 109.47113 * 180.02562 * 4 2 1 17 17 C 1.46901 * 110.99793 * 275.00325 * 16 4 2 18 18 C 1.50701 * 109.46921 * 179.97438 * 17 16 4 19 19 O 1.21294 * 119.99849 * 0.02562 * 18 17 16 20 20 N 1.34780 * 119.99795 * 179.97438 * 18 17 16 21 21 C 1.37101 * 119.99707 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99704 * 359.97438 * 21 20 18 23 23 C 1.38941 * 119.99927 * 180.02562 * 21 20 18 24 24 N 1.31417 * 120.00180 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00273 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47268 * 89.99721 * 25 23 21 27 27 H 1.48498 * 109.47211 * 209.99980 * 25 23 21 28 28 H 1.48505 * 109.46734 * 329.99774 * 25 23 21 29 29 H 1.09005 * 109.46997 * 60.00565 * 1 2 3 30 30 H 1.09004 * 109.46635 * 179.97438 * 1 2 3 31 31 H 1.08989 * 109.47542 * 299.99609 * 1 2 3 32 32 H 1.08995 * 109.47249 * 240.00697 * 2 1 3 33 33 H 1.08996 * 109.46365 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47288 * 299.99473 * 3 2 1 35 35 H 1.08995 * 109.46871 * 60.00466 * 3 2 1 36 36 H 1.09000 * 109.46986 * 305.00035 * 6 4 2 37 37 H 1.08994 * 109.46981 * 65.00265 * 6 4 2 38 38 H 0.97000 * 119.99510 * 0.02562 * 7 6 4 39 39 H 1.07997 * 118.71198 * 0.36159 * 11 10 8 40 40 H 1.08999 * 109.49851 * 224.49222 * 12 11 10 41 41 H 1.09000 * 109.07481 * 104.84270 * 12 11 10 42 42 H 1.08999 * 109.63894 * 171.47941 * 14 13 12 43 43 H 1.08999 * 109.63834 * 50.85648 * 14 13 12 44 44 H 1.09009 * 109.45220 * 283.35588 * 15 10 8 45 45 H 1.09004 * 109.45471 * 43.28790 * 15 10 8 46 46 H 1.00899 * 110.99995 * 151.04723 * 16 4 2 47 47 H 1.09002 * 109.47401 * 59.99808 * 17 16 4 48 48 H 1.09001 * 109.46874 * 299.99821 * 17 16 4 49 49 H 0.96995 * 120.00011 * 0.02562 * 20 18 17 50 50 H 0.97000 * 119.99884 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4427 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6768 -1.7489 1.2492 6 6 1.5299 0.0000 2.4985 7 7 2.1141 -0.6176 3.6916 8 6 1.8059 -0.1439 4.9151 9 8 1.0426 0.7960 5.0287 10 6 2.3929 -0.7637 6.1131 11 6 2.0797 -0.2782 7.3010 12 6 2.6330 -0.8447 8.5781 13 8 3.2111 -2.1290 8.3370 14 6 4.1275 -2.1352 7.2358 15 6 3.3344 -1.9244 5.9433 16 7 3.5091 -0.7207 1.2495 17 6 4.0360 -1.8438 0.4628 18 6 5.5425 -1.8099 0.4856 19 8 6.1203 -0.9364 1.0975 20 7 6.2477 -2.7509 -0.1730 21 6 7.6182 -2.7203 -0.1518 22 1 8.1326 -1.9421 0.3924 23 6 8.3453 -3.6900 -0.8312 24 7 7.7193 -4.6367 -1.4937 25 14 10.2126 -3.6490 -0.8017 26 1 10.7070 -4.4416 0.3526 27 1 10.7405 -4.2288 -2.0628 28 1 10.6748 -2.2437 -0.6715 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8899 32 1 1.8934 -0.5137 -0.8900 33 1 3.1298 1.4427 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6765 1.9564 0.8900 36 1 1.8182 1.0503 2.4548 37 1 0.4437 -0.0770 2.5443 38 1 2.7232 -1.3670 3.6009 39 1 1.3967 0.5564 7.3567 40 1 1.8316 -0.9407 9.3107 41 1 3.3976 -0.1710 8.9649 42 1 4.6455 -3.0934 7.1956 43 1 4.8510 -1.3290 7.3568 44 1 2.7634 -2.8250 5.7171 45 1 4.0231 -1.7164 5.1243 46 1 3.8705 -0.7379 2.1914 47 1 3.6867 -1.7620 -0.5665 48 1 3.6868 -2.7831 0.8915 49 1 5.7857 -3.4495 -0.6620 50 1 8.2270 -5.3139 -1.9677 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667451877.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:25 Heat of formation + Delta-G solvation = -132.913421 kcal Electronic energy + Delta-G solvation = -30077.331966 eV Core-core repulsion = 25910.491716 eV Total energy + Delta-G solvation = -4166.840250 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.45323 -40.34763 -39.79646 -38.88824 -36.00079 -35.48644 -34.70659 -34.47757 -33.22154 -32.09907 -29.94652 -28.14683 -27.80645 -26.91027 -25.68495 -24.79555 -24.20104 -22.38940 -21.14715 -20.39528 -19.88401 -19.40089 -18.68413 -17.95601 -17.52779 -17.05994 -16.92085 -16.75804 -16.39944 -16.28296 -16.11820 -15.84475 -15.45443 -15.25827 -15.16294 -14.77143 -14.60846 -14.45220 -14.16800 -13.89455 -13.66383 -13.54972 -13.44773 -13.35359 -13.09679 -12.90409 -12.71124 -12.64257 -12.55440 -12.40258 -12.12568 -11.96622 -11.82115 -11.75984 -11.49245 -11.35280 -11.25142 -10.63900 -10.34904 -10.31820 -10.05445 -9.99753 -9.34725 -8.45664 -5.93880 0.22001 1.38397 1.42893 1.54897 2.02915 2.07330 2.10558 2.29410 2.84369 2.89638 3.22192 3.45552 3.49149 3.61399 3.66883 3.82021 4.01119 4.09004 4.21563 4.24955 4.29315 4.36161 4.38212 4.42092 4.47685 4.49635 4.59309 4.60691 4.66187 4.71120 4.77553 4.86930 4.89345 4.93502 5.10396 5.13897 5.17848 5.25366 5.33242 5.39449 5.42384 5.51859 5.57579 5.87871 6.06091 6.08788 6.32766 6.33781 6.61477 7.03444 7.14329 7.58245 8.13384 8.71570 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008200 B = 0.003108 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3413.964201 B = 9005.484554 C =11857.811380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.080 4.080 3 C -0.139 4.139 4 C 0.087 3.913 5 H 0.068 0.932 6 C 0.119 3.881 7 N -0.718 5.718 8 C 0.551 3.449 9 O -0.581 6.581 10 C -0.186 4.186 11 C -0.103 4.103 12 C 0.082 3.918 13 O -0.392 6.392 14 C 0.057 3.943 15 C -0.119 4.119 16 N -0.673 5.673 17 C 0.064 3.936 18 C 0.439 3.561 19 O -0.622 6.622 20 N -0.572 5.572 21 C -0.331 4.331 22 H 0.078 0.922 23 C -0.011 4.011 24 N -0.920 5.920 25 Si 0.989 3.011 26 H -0.270 1.270 27 H -0.273 1.273 28 H -0.274 1.274 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.045 0.955 34 H 0.056 0.944 35 H 0.051 0.949 36 H 0.068 0.932 37 H 0.085 0.915 38 H 0.406 0.594 39 H 0.131 0.869 40 H 0.135 0.865 41 H 0.091 0.909 42 H 0.116 0.884 43 H 0.063 0.937 44 H 0.094 0.906 45 H 0.088 0.912 46 H 0.342 0.658 47 H 0.103 0.897 48 H 0.072 0.928 49 H 0.396 0.604 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.984 3.020 12.173 19.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.099 4.099 3 C -0.196 4.196 4 C -0.023 4.023 5 H 0.086 0.914 6 C -0.005 4.005 7 N -0.370 5.370 8 C 0.340 3.660 9 O -0.463 6.463 10 C -0.189 4.189 11 C -0.123 4.123 12 C 0.006 3.994 13 O -0.311 6.311 14 C -0.019 4.019 15 C -0.156 4.156 16 N -0.307 5.307 17 C -0.068 4.068 18 C 0.227 3.773 19 O -0.508 6.508 20 N -0.209 5.209 21 C -0.461 4.461 22 H 0.096 0.904 23 C -0.211 4.211 24 N -0.561 5.561 25 Si 0.813 3.187 26 H -0.195 1.195 27 H -0.198 1.198 28 H -0.199 1.199 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.103 0.897 38 H 0.243 0.757 39 H 0.149 0.851 40 H 0.152 0.848 41 H 0.109 0.891 42 H 0.134 0.866 43 H 0.081 0.919 44 H 0.112 0.888 45 H 0.106 0.894 46 H 0.163 0.837 47 H 0.121 0.879 48 H 0.090 0.910 49 H 0.230 0.770 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.053 4.371 12.095 19.799 hybrid contribution 0.958 -1.036 -0.291 1.440 sum -14.095 3.336 11.804 18.686 Atomic orbital electron populations 1.21891 0.93570 1.02482 1.02473 1.21041 0.95990 0.96451 0.96464 1.21738 1.01143 0.95645 1.01099 1.21864 0.86674 0.99058 0.94656 0.91447 1.21710 0.98621 0.97773 0.82382 1.45956 1.48875 1.36354 1.05802 1.18744 0.80458 0.82468 0.84315 1.90750 1.38181 1.30052 1.87321 1.20920 1.03668 1.01338 0.92989 1.23938 0.95681 0.97935 0.94718 1.21830 0.99031 0.84876 0.93620 1.88120 1.60859 1.30920 1.51163 1.22765 0.90799 1.04169 0.84186 1.21099 0.97764 0.96303 1.00462 1.60047 1.06624 1.45016 1.19016 1.21620 0.90410 0.93651 1.01154 1.20828 0.90509 0.83076 0.82916 1.90507 1.72817 1.39108 1.48360 1.41917 1.06399 1.26442 1.46182 1.19637 0.82647 1.12324 1.31500 0.90358 1.25980 1.04702 0.94855 0.95571 1.69666 1.38105 1.15156 1.33148 0.84978 0.77188 0.78402 0.78104 1.19517 1.19760 1.19919 0.91642 0.91745 0.92384 0.90972 0.93564 0.92513 0.93047 0.91427 0.89687 0.75725 0.85146 0.84758 0.89092 0.86562 0.91867 0.88785 0.89383 0.83746 0.87868 0.91023 0.76991 0.91354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 8.84 71.98 0.64 -1.67 16 2 C -0.08 -1.62 2.84 -10.79 -0.03 -1.65 16 3 C -0.14 -3.23 8.69 71.99 0.63 -2.60 16 4 C 0.09 1.86 2.03 44.91 0.09 1.95 16 5 H 0.07 1.25 7.80 -2.39 -0.02 1.23 16 6 C 0.12 2.64 4.59 86.38 0.40 3.03 16 7 N -0.72 -16.11 4.93 -466.71 -2.30 -18.41 16 8 C 0.55 14.26 7.73 86.57 0.67 14.93 16 9 O -0.58 -18.78 16.06 -4.09 -0.07 -18.84 16 10 C -0.19 -3.97 5.86 -18.59 -0.11 -4.07 16 11 C -0.10 -1.92 9.58 24.59 0.24 -1.69 16 12 C 0.08 1.14 7.04 71.10 0.50 1.64 16 13 O -0.39 -7.13 10.83 -148.98 -1.61 -8.75 16 14 C 0.06 0.93 6.88 72.02 0.50 1.43 16 15 C -0.12 -2.10 5.29 29.79 0.16 -1.94 16 16 N -0.67 -19.15 5.16 -495.56 -2.56 -21.70 16 17 C 0.06 1.98 5.97 85.56 0.51 2.49 16 18 C 0.44 19.69 7.82 87.66 0.69 20.37 16 19 O -0.62 -32.88 15.78 -3.07 -0.05 -32.93 16 20 N -0.57 -28.06 5.29 -306.98 -1.62 -29.69 16 21 C -0.33 -18.27 9.68 84.04 0.81 -17.46 16 22 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 23 C -0.01 -0.59 5.50 84.92 0.47 -0.12 16 24 N -0.92 -48.42 13.05 21.66 0.28 -48.14 16 25 Si 0.99 42.02 29.55 68.60 2.03 44.05 16 26 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 27 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 28 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 29 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 0.91 6.54 -2.39 -0.02 0.90 16 32 H 0.07 1.54 7.45 -2.39 -0.02 1.52 16 33 H 0.05 1.35 7.60 -2.39 -0.02 1.33 16 34 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.05 1.17 6.32 -2.39 -0.02 1.15 16 36 H 0.07 1.76 6.17 -2.39 -0.01 1.74 16 37 H 0.09 1.78 6.71 -2.39 -0.02 1.76 16 38 H 0.41 8.07 5.68 -92.71 -0.53 7.54 16 39 H 0.13 2.56 7.29 -2.91 -0.02 2.53 16 40 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.06 0.98 8.09 -2.39 -0.02 0.96 16 44 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 45 H 0.09 1.56 7.31 -2.39 -0.02 1.54 16 46 H 0.34 10.26 6.41 -89.69 -0.58 9.69 16 47 H 0.10 2.94 7.44 -2.39 -0.02 2.93 16 48 H 0.07 1.85 8.06 -2.39 -0.02 1.83 16 49 H 0.40 18.45 7.90 -92.71 -0.73 17.71 16 50 H 0.28 13.70 8.31 -92.71 -0.77 12.93 16 Total: -1.00 -70.77 399.53 -0.61 -71.38 By element: Atomic # 1 Polarization: 49.24 SS G_CDS: -0.85 Total: 48.39 kcal Atomic # 6 Polarization: 8.50 SS G_CDS: 6.14 Total: 14.65 kcal Atomic # 7 Polarization: -111.75 SS G_CDS: -6.20 Total: -117.95 kcal Atomic # 8 Polarization: -58.79 SS G_CDS: -1.73 Total: -60.52 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -70.77 -0.61 -71.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667451877.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.537 kcal (2) G-P(sol) polarization free energy of solvation -70.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds