Wall clock time and date at job start Tue Mar 31 2020 22:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53010 * 109.46850 * 2 1 4 4 C 1.52995 * 109.47294 * 119.99655 * 2 1 3 5 5 H 1.09000 * 109.47207 * 294.55661 * 4 2 1 6 6 C 1.52995 * 109.47345 * 174.55422 * 4 2 1 7 7 N 1.46500 * 109.47176 * 185.00054 * 6 4 2 8 8 C 1.34780 * 120.00010 * 179.97438 * 7 6 4 9 9 O 1.21284 * 119.99789 * 0.02562 * 8 7 6 10 10 C 1.50695 * 119.99965 * 180.02562 * 8 7 6 11 11 H 1.09000 * 115.51433 * 325.37746 * 10 8 7 12 12 C 1.53006 * 117.43021 * 110.65643 * 10 8 7 13 13 H 1.08988 * 119.80988 * 355.36599 * 12 10 8 14 14 C 1.54485 * 118.06413 * 198.08319 * 12 10 8 15 15 O 1.44432 * 104.80167 * 321.13241 * 14 12 10 16 16 C 1.45921 * 105.86269 * 319.97024 * 15 14 12 17 17 C 1.53000 * 117.43296 * 180.02562 * 10 8 7 18 18 H 1.09007 * 119.80777 * 4.63733 * 17 10 8 19 19 N 1.46905 * 109.46846 * 54.55065 * 4 2 1 20 20 C 1.46901 * 110.99642 * 63.84821 * 19 4 2 21 21 C 1.50697 * 109.47241 * 182.88669 * 20 19 4 22 22 O 1.21299 * 119.99995 * 359.97438 * 21 20 19 23 23 N 1.34777 * 120.00178 * 180.02562 * 21 20 19 24 24 C 1.37102 * 119.99674 * 179.97438 * 23 21 20 25 25 H 1.07992 * 120.00222 * 359.97438 * 24 23 21 26 26 C 1.38952 * 119.99486 * 179.97438 * 24 23 21 27 27 N 1.31408 * 120.00143 * 359.97438 * 26 24 23 28 28 Si 1.86804 * 119.99735 * 179.97438 * 26 24 23 29 29 H 1.48501 * 109.46903 * 60.00227 * 28 26 24 30 30 H 1.48497 * 109.46993 * 179.97438 * 28 26 24 31 31 H 1.48501 * 109.47229 * 300.00262 * 28 26 24 32 32 H 1.08994 * 109.47132 * 294.74600 * 1 2 3 33 33 H 1.08998 * 109.46707 * 54.74620 * 1 2 3 34 34 H 1.09001 * 109.46682 * 174.74193 * 1 2 3 35 35 H 1.08996 * 109.46962 * 240.00017 * 2 1 3 36 36 H 1.08993 * 109.46666 * 180.02562 * 3 2 1 37 37 H 1.09004 * 109.46729 * 299.99890 * 3 2 1 38 38 H 1.08994 * 109.47104 * 59.99745 * 3 2 1 39 39 H 1.09004 * 109.47320 * 304.99895 * 6 4 2 40 40 H 1.09000 * 109.47079 * 64.99714 * 6 4 2 41 41 H 0.96994 * 120.00285 * 0.02562 * 7 6 4 42 42 H 1.08999 * 110.36742 * 79.96145 * 14 12 10 43 43 H 1.08993 * 110.37327 * 202.29730 * 14 12 10 44 44 H 1.09003 * 109.50661 * 281.47007 * 16 15 14 45 45 H 1.08999 * 111.92101 * 158.67969 * 16 15 14 46 46 H 1.00899 * 110.99913 * 187.79212 * 19 4 2 47 47 H 1.09005 * 109.47239 * 302.88838 * 20 19 4 48 48 H 1.09000 * 109.47640 * 62.88483 * 20 19 4 49 49 H 0.96993 * 120.00197 * 359.97438 * 23 21 20 50 50 H 0.97009 * 119.99934 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7211 1.2492 5 1 1.7586 -0.1541 2.1365 6 6 3.5639 -0.8408 1.1827 7 7 4.0415 -1.6345 2.3176 8 6 5.3596 -1.8733 2.4659 9 8 6.1505 -1.4307 1.6599 10 6 5.8508 -2.6903 3.6330 11 1 5.2920 -2.5669 4.5607 12 6 6.4175 -4.0793 3.3323 13 1 6.3836 -4.4698 2.3153 14 6 6.5275 -5.0874 4.4978 15 8 6.9461 -4.2964 5.6315 16 6 7.9289 -3.3491 5.1158 17 6 7.3586 -2.9247 3.7445 18 1 8.0355 -2.4431 3.0387 19 7 1.4459 -2.0630 1.3168 20 6 1.8784 -2.8880 0.1809 21 6 1.1952 -4.2296 0.2455 22 8 0.4241 -4.4747 1.1493 23 7 1.4416 -5.1576 -0.7003 24 6 0.8203 -6.3784 -0.6412 25 1 0.1339 -6.5965 0.1635 26 6 1.0740 -7.3349 -1.6166 27 7 1.9089 -7.0692 -2.5960 28 14 0.2281 -8.9985 -1.5357 29 1 -1.2436 -8.8087 -1.5934 30 1 0.6646 -9.8321 -2.6844 31 1 0.5903 -9.6767 -0.2652 32 1 -0.3633 0.4302 0.9332 33 1 -0.3633 0.5932 -0.8392 34 1 -0.3633 -1.0234 -0.0942 35 1 1.8934 -0.5138 -0.8900 36 1 3.1300 1.4426 -0.0005 37 1 1.6766 1.9564 -0.8900 38 1 1.6766 1.9564 0.8899 39 1 3.8497 -1.3299 0.2514 40 1 4.0085 0.1536 1.2220 41 1 3.4090 -1.9889 2.9620 42 1 5.5593 -5.5482 4.6933 43 1 7.2727 -5.8498 4.2710 44 1 8.8876 -3.8521 4.9891 45 1 8.0378 -2.4813 5.7662 46 1 1.6650 -2.5117 2.1936 47 1 1.6134 -2.3898 -0.7517 48 1 2.9585 -3.0279 0.2238 49 1 2.0584 -4.9618 -1.4228 50 1 2.0863 -7.7372 -3.2767 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667489243.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:47 Heat of formation + Delta-G solvation = -87.831751 kcal Electronic energy + Delta-G solvation = -30336.089147 eV Core-core repulsion = 26171.203786 eV Total energy + Delta-G solvation = -4164.885362 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.95626 -39.63487 -38.53966 -37.53044 -34.56817 -34.39802 -34.02398 -32.93551 -31.22327 -29.10478 -28.97538 -27.27516 -26.85051 -25.84391 -24.30290 -23.09737 -21.64168 -20.91382 -20.42106 -19.78106 -18.83787 -17.98717 -17.85583 -16.71799 -16.25379 -16.21682 -15.73125 -15.64090 -15.31875 -15.10018 -14.71314 -14.48169 -14.29526 -14.10613 -13.79074 -13.49305 -13.45064 -13.34820 -12.92205 -12.85330 -12.43487 -12.24737 -12.03665 -11.97810 -11.89707 -11.70382 -11.60924 -11.48192 -11.06373 -10.91895 -10.83264 -10.62853 -10.50049 -10.46162 -10.44649 -10.22502 -10.13309 -9.83545 -9.51121 -9.23624 -8.51830 -8.10976 -7.97474 -6.42740 -3.83820 2.23732 2.79696 3.18703 3.24777 3.28850 3.33818 3.58756 3.89259 4.06098 4.25509 4.30807 4.31711 4.47382 4.57406 4.59157 4.74416 4.87802 4.98898 5.07896 5.12405 5.15553 5.17255 5.23617 5.29383 5.32288 5.37453 5.49355 5.50780 5.62313 5.63553 5.67207 5.74270 5.75104 5.83946 5.89482 5.97066 5.99563 6.09771 6.23105 6.26567 6.35976 6.37902 6.59120 7.10426 7.27309 7.52386 7.53580 8.03531 8.04484 8.59722 9.16483 9.52979 10.04290 10.74788 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.006834 B = 0.003750 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4096.470505 B = 7463.925938 C =10696.149436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.086 4.086 3 C -0.150 4.150 4 C 0.082 3.918 5 H 0.089 0.911 6 C 0.079 3.921 7 N -0.722 5.722 8 C 0.548 3.452 9 O -0.539 6.539 10 C -0.147 4.147 11 H 0.127 0.873 12 C -0.168 4.168 13 H 0.132 0.868 14 C 0.073 3.927 15 O -0.379 6.379 16 C 0.073 3.927 17 C -0.168 4.168 18 H 0.135 0.865 19 N -0.651 5.651 20 C 0.044 3.956 21 C 0.441 3.559 22 O -0.583 6.583 23 N -0.563 5.563 24 C -0.300 4.300 25 H 0.102 0.898 26 C 0.023 3.977 27 N -0.901 5.901 28 Si 0.930 3.070 29 H -0.273 1.273 30 H -0.284 1.284 31 H -0.274 1.274 32 H 0.051 0.949 33 H 0.045 0.955 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.401 0.599 42 H 0.102 0.898 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.100 0.900 46 H 0.345 0.655 47 H 0.088 0.912 48 H 0.045 0.955 49 H 0.391 0.609 50 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.266 12.867 9.944 18.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.105 4.105 3 C -0.208 4.208 4 C -0.029 4.029 5 H 0.107 0.893 6 C -0.046 4.046 7 N -0.374 5.374 8 C 0.334 3.666 9 O -0.416 6.416 10 C -0.168 4.168 11 H 0.144 0.856 12 C -0.187 4.187 13 H 0.149 0.851 14 C -0.003 4.003 15 O -0.298 6.298 16 C -0.004 4.004 17 C -0.187 4.187 18 H 0.153 0.847 19 N -0.283 5.283 20 C -0.088 4.088 21 C 0.227 3.773 22 O -0.467 6.467 23 N -0.200 5.200 24 C -0.430 4.430 25 H 0.120 0.880 26 C -0.178 4.178 27 N -0.542 5.542 28 Si 0.757 3.243 29 H -0.199 1.199 30 H -0.210 1.210 31 H -0.199 1.199 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.236 0.764 42 H 0.120 0.880 43 H 0.094 0.906 44 H 0.092 0.908 45 H 0.118 0.882 46 H 0.165 0.835 47 H 0.106 0.894 48 H 0.063 0.937 49 H 0.224 0.776 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.698 13.047 9.722 18.450 hybrid contribution 0.699 -1.057 -0.342 1.313 sum 9.398 11.990 9.380 17.890 Atomic orbital electron populations 1.21662 0.93727 1.03115 1.00700 1.21094 0.97326 0.95217 0.96903 1.21912 1.00887 0.95991 1.01962 1.21989 0.89119 0.91856 0.99958 0.89265 1.22273 0.96772 0.96118 0.89424 1.45871 1.07464 1.54954 1.29109 1.19444 0.82159 0.79698 0.85315 1.90702 1.54933 1.51692 1.44250 1.22060 0.97297 0.98151 0.99331 0.85551 1.24059 1.03942 0.89004 1.01679 0.85057 1.22987 1.01239 0.92555 0.83563 1.89345 1.59634 1.49774 1.31031 1.23227 0.91976 0.92717 0.92454 1.23998 0.91699 1.02983 0.99999 0.84721 1.60237 1.61079 1.01605 1.05364 1.21769 0.97416 0.94043 0.95601 1.19786 0.86672 0.85722 0.85151 1.90523 1.39418 1.80298 1.36500 1.41856 1.40851 1.13030 1.24218 1.19641 1.23314 0.89447 1.10578 0.87995 1.25252 0.97113 1.00059 0.95409 1.69606 1.35134 1.36122 1.13384 0.85936 0.79533 0.81173 0.77686 1.19874 1.20978 1.19920 0.93013 0.93596 0.90902 0.90934 0.92682 0.92410 0.92612 0.90878 0.90879 0.76400 0.87981 0.90616 0.90757 0.88201 0.83549 0.89356 0.93682 0.77551 0.91816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.57 8.88 37.16 0.33 -1.24 16 2 C -0.09 -0.92 2.07 -90.61 -0.19 -1.11 16 3 C -0.15 -1.32 8.96 37.16 0.33 -0.99 16 4 C 0.08 0.90 2.29 -67.71 -0.16 0.74 16 5 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 6 C 0.08 0.90 4.15 -4.04 -0.02 0.89 16 7 N -0.72 -8.11 5.37 -60.30 -0.32 -8.43 16 8 C 0.55 7.07 7.61 -10.99 -0.08 6.98 16 9 O -0.54 -8.74 16.34 5.55 0.09 -8.65 16 10 C -0.15 -1.59 5.55 -91.77 -0.51 -2.10 16 11 H 0.13 1.22 8.06 -51.93 -0.42 0.80 16 12 C -0.17 -1.78 6.95 -89.02 -0.62 -2.40 16 13 H 0.13 1.50 8.14 -51.94 -0.42 1.08 16 14 C 0.07 0.70 7.57 37.94 0.29 0.99 16 15 O -0.38 -4.05 11.33 -35.23 -0.40 -4.45 16 16 C 0.07 0.61 7.66 37.92 0.29 0.90 16 17 C -0.17 -1.67 6.64 -89.04 -0.59 -2.26 16 18 H 0.14 1.41 7.81 -51.93 -0.41 1.00 16 19 N -0.65 -9.29 5.03 -107.99 -0.54 -9.84 16 20 C 0.04 0.74 5.33 -4.98 -0.03 0.71 16 21 C 0.44 10.08 7.83 -10.99 -0.09 9.99 16 22 O -0.58 -15.26 15.84 5.54 0.09 -15.17 16 23 N -0.56 -14.06 5.29 -10.96 -0.06 -14.12 16 24 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 25 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 26 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 27 N -0.90 -24.40 13.05 55.50 0.72 -23.68 16 28 Si 0.93 20.90 29.55 -169.99 -5.02 15.88 16 29 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 30 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 31 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 1.06 7.65 -51.93 -0.40 0.66 16 35 H 0.07 0.84 6.71 -51.93 -0.35 0.49 16 36 H 0.05 0.48 6.69 -51.93 -0.35 0.13 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.97 6.71 -51.93 -0.35 0.62 16 40 H 0.07 0.81 6.83 -51.93 -0.35 0.46 16 41 H 0.40 3.92 7.20 -40.82 -0.29 3.63 16 42 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.34 4.95 7.21 -39.29 -0.28 4.67 16 47 H 0.09 1.41 6.38 -51.93 -0.33 1.08 16 48 H 0.05 0.73 6.52 -51.93 -0.34 0.40 16 49 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 50 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 402.36 15.07 6.06 6.06 Total: -1.00 -32.58 402.36 -8.58 -41.17 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: -7.93 Total: 17.99 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: -1.27 Total: 3.22 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: -0.20 Total: -56.06 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -0.22 Total: -28.26 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.58 -8.58 -41.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667489243.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.663 kcal (2) G-P(sol) polarization free energy of solvation -32.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds