Wall clock time and date at job start Tue Mar 31 2020 22:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53010 * 109.46850 * 2 1 4 4 C 1.52995 * 109.47294 * 119.99655 * 2 1 3 5 5 H 1.09000 * 109.47207 * 294.55661 * 4 2 1 6 6 C 1.52995 * 109.47345 * 174.55422 * 4 2 1 7 7 N 1.46500 * 109.47176 * 185.00054 * 6 4 2 8 8 C 1.34780 * 120.00010 * 179.97438 * 7 6 4 9 9 O 1.21284 * 119.99789 * 0.02562 * 8 7 6 10 10 C 1.50695 * 119.99965 * 180.02562 * 8 7 6 11 11 H 1.09000 * 115.51433 * 325.37746 * 10 8 7 12 12 C 1.53006 * 117.43021 * 110.65643 * 10 8 7 13 13 H 1.08988 * 119.80988 * 355.36599 * 12 10 8 14 14 C 1.54485 * 118.06413 * 198.08319 * 12 10 8 15 15 O 1.44432 * 104.80167 * 321.13241 * 14 12 10 16 16 C 1.45921 * 105.86269 * 319.97024 * 15 14 12 17 17 C 1.53000 * 117.43296 * 180.02562 * 10 8 7 18 18 H 1.09007 * 119.80777 * 4.63733 * 17 10 8 19 19 N 1.46905 * 109.46846 * 54.55065 * 4 2 1 20 20 C 1.46901 * 110.99642 * 63.84821 * 19 4 2 21 21 C 1.50697 * 109.47241 * 182.88669 * 20 19 4 22 22 O 1.21299 * 119.99995 * 359.97438 * 21 20 19 23 23 N 1.34777 * 120.00178 * 180.02562 * 21 20 19 24 24 C 1.37102 * 119.99674 * 179.97438 * 23 21 20 25 25 H 1.07992 * 120.00222 * 359.97438 * 24 23 21 26 26 C 1.38952 * 119.99486 * 179.97438 * 24 23 21 27 27 N 1.31408 * 120.00143 * 359.97438 * 26 24 23 28 28 Si 1.86804 * 119.99735 * 179.97438 * 26 24 23 29 29 H 1.48501 * 109.46903 * 60.00227 * 28 26 24 30 30 H 1.48497 * 109.46993 * 179.97438 * 28 26 24 31 31 H 1.48501 * 109.47229 * 300.00262 * 28 26 24 32 32 H 1.08994 * 109.47132 * 294.74600 * 1 2 3 33 33 H 1.08998 * 109.46707 * 54.74620 * 1 2 3 34 34 H 1.09001 * 109.46682 * 174.74193 * 1 2 3 35 35 H 1.08996 * 109.46962 * 240.00017 * 2 1 3 36 36 H 1.08993 * 109.46666 * 180.02562 * 3 2 1 37 37 H 1.09004 * 109.46729 * 299.99890 * 3 2 1 38 38 H 1.08994 * 109.47104 * 59.99745 * 3 2 1 39 39 H 1.09004 * 109.47320 * 304.99895 * 6 4 2 40 40 H 1.09000 * 109.47079 * 64.99714 * 6 4 2 41 41 H 0.96994 * 120.00285 * 0.02562 * 7 6 4 42 42 H 1.08999 * 110.36742 * 79.96145 * 14 12 10 43 43 H 1.08993 * 110.37327 * 202.29730 * 14 12 10 44 44 H 1.09003 * 109.50661 * 281.47007 * 16 15 14 45 45 H 1.08999 * 111.92101 * 158.67969 * 16 15 14 46 46 H 1.00899 * 110.99913 * 187.79212 * 19 4 2 47 47 H 1.09005 * 109.47239 * 302.88838 * 20 19 4 48 48 H 1.09000 * 109.47640 * 62.88483 * 20 19 4 49 49 H 0.96993 * 120.00197 * 359.97438 * 23 21 20 50 50 H 0.97009 * 119.99934 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7211 1.2492 5 1 1.7586 -0.1541 2.1365 6 6 3.5639 -0.8408 1.1827 7 7 4.0415 -1.6345 2.3176 8 6 5.3596 -1.8733 2.4659 9 8 6.1505 -1.4307 1.6599 10 6 5.8508 -2.6903 3.6330 11 1 5.2920 -2.5669 4.5607 12 6 6.4175 -4.0793 3.3323 13 1 6.3836 -4.4698 2.3153 14 6 6.5275 -5.0874 4.4978 15 8 6.9461 -4.2964 5.6315 16 6 7.9289 -3.3491 5.1158 17 6 7.3586 -2.9247 3.7445 18 1 8.0355 -2.4431 3.0387 19 7 1.4459 -2.0630 1.3168 20 6 1.8784 -2.8880 0.1809 21 6 1.1952 -4.2296 0.2455 22 8 0.4241 -4.4747 1.1493 23 7 1.4416 -5.1576 -0.7003 24 6 0.8203 -6.3784 -0.6412 25 1 0.1339 -6.5965 0.1635 26 6 1.0740 -7.3349 -1.6166 27 7 1.9089 -7.0692 -2.5960 28 14 0.2281 -8.9985 -1.5357 29 1 -1.2436 -8.8087 -1.5934 30 1 0.6646 -9.8321 -2.6844 31 1 0.5903 -9.6767 -0.2652 32 1 -0.3633 0.4302 0.9332 33 1 -0.3633 0.5932 -0.8392 34 1 -0.3633 -1.0234 -0.0942 35 1 1.8934 -0.5138 -0.8900 36 1 3.1300 1.4426 -0.0005 37 1 1.6766 1.9564 -0.8900 38 1 1.6766 1.9564 0.8899 39 1 3.8497 -1.3299 0.2514 40 1 4.0085 0.1536 1.2220 41 1 3.4090 -1.9889 2.9620 42 1 5.5593 -5.5482 4.6933 43 1 7.2727 -5.8498 4.2710 44 1 8.8876 -3.8521 4.9891 45 1 8.0378 -2.4813 5.7662 46 1 1.6650 -2.5117 2.1936 47 1 1.6134 -2.3898 -0.7517 48 1 2.9585 -3.0279 0.2238 49 1 2.0584 -4.9618 -1.4228 50 1 2.0863 -7.7372 -3.2767 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667489243.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:46 Heat of formation + Delta-G solvation = -112.389547 kcal Electronic energy + Delta-G solvation = -30337.154053 eV Core-core repulsion = 26171.203786 eV Total energy + Delta-G solvation = -4165.950268 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.83666 -40.72295 -39.95059 -38.90375 -35.98512 -35.44286 -35.32680 -34.16441 -33.23571 -30.17016 -29.72054 -28.54087 -27.72651 -26.98465 -25.97130 -24.03904 -22.56560 -21.74726 -21.60979 -21.02309 -20.22594 -19.71625 -18.87128 -18.22489 -17.24608 -17.03962 -16.93674 -16.70258 -16.50767 -16.25848 -15.97338 -15.94786 -15.58993 -15.32217 -15.19259 -14.70517 -14.53078 -14.34616 -13.94827 -13.92880 -13.61032 -13.52336 -13.29931 -13.09587 -12.86420 -12.81001 -12.78034 -12.65771 -12.58274 -12.42823 -12.13295 -11.84702 -11.75822 -11.49737 -11.46020 -11.39069 -11.29896 -11.08280 -10.64137 -10.35164 -10.22807 -10.01617 -9.38445 -8.46382 -5.95350 1.25704 1.39433 1.41449 1.52260 1.88253 2.05104 2.28635 2.48819 2.81648 2.92909 3.20675 3.46270 3.48724 3.52456 3.62796 3.65229 3.80957 3.92268 4.03597 4.11554 4.20633 4.25818 4.31754 4.38789 4.45307 4.47338 4.54538 4.62112 4.66687 4.72983 4.78253 4.79796 4.80771 4.89163 4.91877 4.93340 5.09651 5.14813 5.22242 5.35202 5.40512 5.50032 5.59830 5.65343 5.84596 6.06083 6.31385 6.37613 6.59122 7.05002 7.12368 7.55774 8.10518 8.70768 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.006834 B = 0.003750 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4096.470505 B = 7463.925938 C =10696.149436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.086 4.086 3 C -0.144 4.144 4 C 0.092 3.908 5 H 0.111 0.889 6 C 0.085 3.915 7 N -0.714 5.714 8 C 0.545 3.455 9 O -0.576 6.576 10 C -0.151 4.151 11 H 0.140 0.860 12 C -0.177 4.177 13 H 0.118 0.882 14 C 0.076 3.924 15 O -0.395 6.395 16 C 0.075 3.925 17 C -0.161 4.161 18 H 0.128 0.872 19 N -0.657 5.657 20 C 0.065 3.935 21 C 0.441 3.559 22 O -0.617 6.617 23 N -0.574 5.574 24 C -0.333 4.333 25 H 0.081 0.919 26 C -0.012 4.012 27 N -0.922 5.922 28 Si 0.991 3.009 29 H -0.272 1.272 30 H -0.272 1.272 31 H -0.270 1.270 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.040 0.960 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.055 0.945 40 H 0.082 0.918 41 H 0.409 0.591 42 H 0.102 0.898 43 H 0.089 0.911 44 H 0.091 0.909 45 H 0.117 0.883 46 H 0.345 0.655 47 H 0.099 0.901 48 H 0.053 0.947 49 H 0.393 0.607 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.667 13.624 10.754 19.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.105 4.105 3 C -0.201 4.201 4 C -0.018 4.018 5 H 0.129 0.871 6 C -0.040 4.040 7 N -0.366 5.366 8 C 0.332 3.668 9 O -0.456 6.456 10 C -0.171 4.171 11 H 0.158 0.842 12 C -0.196 4.196 13 H 0.136 0.864 14 C -0.001 4.001 15 O -0.314 6.314 16 C -0.001 4.001 17 C -0.179 4.179 18 H 0.146 0.854 19 N -0.289 5.289 20 C -0.067 4.067 21 C 0.228 3.772 22 O -0.503 6.503 23 N -0.211 5.211 24 C -0.462 4.462 25 H 0.099 0.901 26 C -0.212 4.212 27 N -0.563 5.563 28 Si 0.815 3.185 29 H -0.197 1.197 30 H -0.197 1.197 31 H -0.195 1.195 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.100 0.900 41 H 0.246 0.754 42 H 0.120 0.880 43 H 0.107 0.893 44 H 0.110 0.890 45 H 0.135 0.865 46 H 0.164 0.836 47 H 0.117 0.883 48 H 0.071 0.929 49 H 0.227 0.773 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.091 13.824 10.539 19.617 hybrid contribution 0.560 -1.219 -0.587 1.464 sum 9.651 12.606 9.953 18.738 Atomic orbital electron populations 1.21601 0.94307 1.01238 1.01608 1.21101 0.96703 0.96564 0.96157 1.21854 1.00986 0.94377 1.02905 1.22046 0.88588 0.90019 1.01192 0.87103 1.22209 0.96838 0.96323 0.88665 1.45848 1.07257 1.54431 1.29050 1.19811 0.82241 0.79363 0.85389 1.90680 1.55874 1.53333 1.45717 1.22061 0.98250 0.97941 0.98894 0.84237 1.24065 1.04603 0.89419 1.01513 0.86411 1.23023 1.01777 0.92398 0.82860 1.89326 1.60303 1.50275 1.31497 1.23399 0.92009 0.93084 0.91608 1.24048 0.91090 1.01970 1.00825 0.85416 1.60221 1.61758 1.02528 1.04400 1.21508 0.96914 0.91014 0.97272 1.20779 0.85677 0.87094 0.83628 1.90492 1.40851 1.81379 1.37587 1.41939 1.41187 1.13038 1.24969 1.19634 1.24393 0.91222 1.10970 0.90121 1.26028 0.97413 1.03086 0.94664 1.69677 1.35652 1.37262 1.13682 0.85012 0.78420 0.77004 0.78067 1.19697 1.19665 1.19521 0.92218 0.92567 0.94128 0.92012 0.92435 0.91787 0.91419 0.92716 0.89953 0.75413 0.87962 0.89287 0.89046 0.86522 0.83552 0.88268 0.92889 0.77347 0.91374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 8.88 71.98 0.64 -2.23 16 2 C -0.09 -1.70 2.07 -10.79 -0.02 -1.72 16 3 C -0.14 -2.17 8.96 71.99 0.64 -1.53 16 4 C 0.09 1.86 2.29 44.91 0.10 1.96 16 5 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 6 C 0.09 1.83 4.15 86.38 0.36 2.19 16 7 N -0.71 -15.36 5.37 -463.06 -2.49 -17.84 16 8 C 0.54 13.81 7.61 87.66 0.67 14.48 16 9 O -0.58 -18.70 16.34 -3.04 -0.05 -18.75 16 10 C -0.15 -3.13 5.55 -11.54 -0.06 -3.20 16 11 H 0.14 2.50 8.06 -2.39 -0.02 2.48 16 12 C -0.18 -3.69 6.95 -9.76 -0.07 -3.76 16 13 H 0.12 2.76 8.14 -2.39 -0.02 2.75 16 14 C 0.08 1.39 7.57 72.49 0.55 1.93 16 15 O -0.39 -7.79 11.33 -148.98 -1.69 -9.48 16 16 C 0.07 1.11 7.66 72.48 0.56 1.67 16 17 C -0.16 -3.05 6.64 -9.77 -0.06 -3.11 16 18 H 0.13 2.63 7.81 -2.38 -0.02 2.61 16 19 N -0.66 -18.28 5.03 -495.58 -2.49 -20.77 16 20 C 0.07 2.19 5.33 85.56 0.46 2.65 16 21 C 0.44 20.52 7.83 87.66 0.69 21.21 16 22 O -0.62 -32.97 15.84 -3.09 -0.05 -33.02 16 23 N -0.57 -29.39 5.29 -306.98 -1.62 -31.02 16 24 C -0.33 -18.77 9.68 84.04 0.81 -17.96 16 25 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 26 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 27 N -0.92 -50.00 13.05 21.66 0.28 -49.71 16 28 Si 0.99 42.75 29.55 68.60 2.03 44.78 16 29 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 30 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 31 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 32 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.04 1.16 7.65 -2.39 -0.02 1.14 16 35 H 0.06 1.37 6.71 -2.39 -0.02 1.35 16 36 H 0.06 0.86 6.69 -2.39 -0.02 0.84 16 37 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 38 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.05 1.41 6.71 -2.38 -0.02 1.40 16 40 H 0.08 1.68 6.83 -2.39 -0.02 1.66 16 41 H 0.41 7.50 7.20 -92.71 -0.67 6.83 16 42 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.34 9.63 7.21 -89.69 -0.65 8.99 16 47 H 0.10 3.15 6.38 -2.38 -0.02 3.14 16 48 H 0.05 1.72 6.52 -2.39 -0.02 1.70 16 49 H 0.39 19.50 7.90 -92.71 -0.73 18.77 16 50 H 0.28 14.13 8.31 -92.70 -0.77 13.36 16 Total: -1.00 -70.76 402.36 -1.42 -72.18 By element: Atomic # 1 Polarization: 52.29 SS G_CDS: -1.06 Total: 51.23 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: 5.72 Total: 12.40 kcal Atomic # 7 Polarization: -113.03 SS G_CDS: -6.32 Total: -119.34 kcal Atomic # 8 Polarization: -59.45 SS G_CDS: -1.79 Total: -61.24 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -70.76 -1.42 -72.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667489243.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.210 kcal (2) G-P(sol) polarization free energy of solvation -70.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds