Wall clock time and date at job start Tue Mar 31 2020 23:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50703 * 109.47466 * 180.02562 * 3 2 1 5 5 O 1.21278 * 119.99818 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99991 * 180.02562 * 4 3 2 7 7 C 1.46496 * 120.00012 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.47161 * 179.97438 * 7 6 4 9 9 H 1.09001 * 110.26541 * 60.62299 * 8 7 6 10 10 C 1.55008 * 110.30160 * 182.79577 * 8 7 6 11 11 C 1.55459 * 101.02556 * 155.01954 * 10 8 7 12 12 C 1.53780 * 102.01687 * 326.40652 * 11 10 8 13 13 C 1.53259 * 114.71793 * 151.72192 * 12 11 10 14 14 N 1.48088 * 85.98429 * 92.51607 * 13 12 11 15 15 C 1.46891 * 111.00289 * 137.14720 * 14 13 12 16 16 C 1.50701 * 109.47339 * 70.51320 * 15 14 13 17 17 O 1.21295 * 119.99921 * 359.97438 * 16 15 14 18 18 N 1.34778 * 120.00133 * 180.02562 * 16 15 14 19 19 C 1.37095 * 120.00083 * 179.97438 * 18 16 15 20 20 H 1.08003 * 119.99881 * 0.02562 * 19 18 16 21 21 C 1.38955 * 119.99969 * 179.97438 * 19 18 16 22 22 N 1.31404 * 119.99677 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99565 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47223 * 60.00301 * 23 21 19 25 25 H 1.48507 * 109.46492 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47356 * 299.99675 * 23 21 19 27 27 C 1.48085 * 90.87139 * 24.20411 * 14 13 12 28 28 O 1.42536 * 108.37371 * 20.95759 * 12 11 10 29 29 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 32 32 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 33 33 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 34 34 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 35 35 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 36 36 H 0.97004 * 120.00071 * 359.97438 * 6 4 3 37 37 H 1.08993 * 109.47156 * 300.00430 * 7 6 4 38 38 H 1.09002 * 109.47021 * 60.00038 * 7 6 4 39 39 H 1.09002 * 111.10859 * 272.95839 * 10 8 7 40 40 H 1.08996 * 111.10959 * 37.07720 * 10 8 7 41 41 H 1.08994 * 110.91811 * 208.22612 * 11 10 8 42 42 H 1.08994 * 110.95295 * 84.59769 * 11 10 8 43 43 H 1.09007 * 113.78750 * 206.77752 * 13 12 11 44 44 H 1.09000 * 113.79437 * 338.24374 * 13 12 11 45 45 H 1.09004 * 109.47183 * 190.51314 * 15 14 13 46 46 H 1.09003 * 109.47415 * 310.50948 * 15 14 13 47 47 H 0.97001 * 119.99632 * 359.97438 * 18 16 15 48 48 H 0.97009 * 119.99437 * 179.97438 * 22 21 19 49 49 H 1.09002 * 113.79227 * 221.52936 * 27 14 13 50 50 H 1.08999 * 113.79241 * 90.06073 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 8 4.1534 0.3922 -0.0015 6 7 4.2209 2.6097 -0.0002 7 6 5.6859 2.6098 -0.0003 8 6 6.1958 4.0523 -0.0004 9 1 5.8488 4.5755 0.8906 10 6 7.7441 4.0753 -0.0714 11 6 7.9919 5.4730 -0.7053 12 6 6.7771 5.6222 -1.6364 13 6 6.3364 7.0683 -1.8882 14 7 7.2207 7.0212 -3.0751 15 6 6.5754 7.6459 -4.2375 16 6 6.4968 9.1362 -4.0278 17 8 6.9349 9.6293 -3.0099 18 7 5.9389 9.9209 -4.9709 19 6 5.8670 11.2766 -4.7799 20 1 6.2578 11.7158 -3.8739 21 6 5.2923 12.0857 -5.7524 22 7 4.8173 11.5513 -6.8550 23 14 5.1949 13.9330 -5.4924 24 1 6.5648 14.4831 -5.3317 25 1 4.5420 14.5644 -6.6673 26 1 4.3999 14.2198 -4.2714 27 6 7.1034 5.5461 -3.1321 28 8 5.7542 4.7378 -1.1856 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 3.7359 3.4498 0.0001 37 1 6.0492 2.0956 0.8894 38 1 6.0492 2.0963 -0.8905 39 1 8.1837 4.0123 0.9241 40 1 8.1194 3.2801 -0.7153 41 1 8.9217 5.4831 -1.2739 42 1 7.9957 6.2517 0.0573 43 1 5.2787 7.1695 -2.1316 44 1 6.6669 7.7686 -1.1211 45 1 7.1590 7.4353 -5.1338 46 1 5.5699 7.2420 -4.3556 47 1 5.5883 9.5265 -5.7848 48 1 4.4157 12.1162 -7.5337 49 1 8.0425 5.0384 -3.3520 50 1 6.2740 5.1942 -3.7456 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673523016.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:54 Heat of formation + Delta-G solvation = -94.022295 kcal Electronic energy + Delta-G solvation = -29232.140726 eV Core-core repulsion = 25066.986922 eV Total energy + Delta-G solvation = -4165.153804 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.97615 -39.93740 -38.49694 -37.25431 -35.03408 -34.56971 -33.89895 -32.44487 -31.34768 -30.78655 -29.05573 -27.56911 -26.13088 -25.31487 -23.99048 -22.61331 -22.06044 -21.63410 -20.42154 -19.41089 -19.13621 -17.91410 -17.39396 -17.16897 -16.27954 -16.18875 -16.13654 -15.91923 -15.38585 -14.81509 -14.59547 -14.55051 -14.10439 -13.96261 -13.78925 -13.62697 -13.44358 -13.18765 -13.03346 -12.86505 -12.46904 -12.28390 -12.13751 -12.08229 -11.94579 -11.87400 -11.59030 -11.53936 -11.41957 -11.25411 -11.08633 -11.03067 -10.90562 -10.49092 -10.44479 -10.22018 -10.07315 -9.57254 -9.49118 -9.34867 -8.72711 -8.26597 -7.97662 -6.42695 -3.83590 2.40068 2.86176 3.18926 3.24693 3.28827 3.40724 3.88529 4.01812 4.18082 4.27634 4.36737 4.40216 4.46636 4.56383 4.59754 4.65139 4.79207 4.96722 5.04869 5.08176 5.10518 5.14993 5.23565 5.24662 5.27664 5.36402 5.41823 5.52284 5.57007 5.60306 5.68450 5.70596 5.73707 5.76709 5.80548 5.82218 5.91702 5.96080 5.96405 6.13517 6.17461 6.25129 6.56561 6.91370 7.15357 7.22853 7.53747 7.96829 8.04161 8.60137 9.16554 9.52849 10.04493 10.74975 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013332 B = 0.001988 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.749668 B =14081.634645 C =15576.723863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.109 4.109 3 C -0.142 4.142 4 C 0.511 3.489 5 O -0.546 6.546 6 N -0.726 5.726 7 C 0.123 3.877 8 C 0.065 3.935 9 H 0.079 0.921 10 C -0.148 4.148 11 C -0.119 4.119 12 C 0.076 3.924 13 C 0.022 3.978 14 N -0.448 5.448 15 C 0.013 3.987 16 C 0.444 3.556 17 O -0.580 6.580 18 N -0.564 5.564 19 C -0.300 4.300 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.274 1.274 27 C -0.002 4.002 28 O -0.360 6.360 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.406 0.594 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.084 0.916 43 H 0.073 0.927 44 H 0.098 0.902 45 H 0.091 0.909 46 H 0.055 0.945 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.092 0.908 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.985 -20.693 12.914 24.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.182 4.182 4 C 0.298 3.702 5 O -0.424 6.424 6 N -0.378 5.378 7 C -0.001 4.001 8 C 0.007 3.993 9 H 0.097 0.903 10 C -0.186 4.186 11 C -0.157 4.157 12 C 0.036 3.964 13 C -0.106 4.106 14 N -0.171 5.171 15 C -0.119 4.119 16 C 0.229 3.771 17 O -0.464 6.464 18 N -0.200 5.200 19 C -0.429 4.429 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.131 4.131 28 O -0.278 6.278 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.241 0.759 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.105 0.895 40 H 0.101 0.899 41 H 0.110 0.890 42 H 0.103 0.897 43 H 0.091 0.909 44 H 0.116 0.884 45 H 0.109 0.891 46 H 0.073 0.927 47 H 0.225 0.775 48 H 0.082 0.918 49 H 0.110 0.890 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.900 -20.725 13.333 24.717 hybrid contribution -1.202 0.971 -0.709 1.700 sum -3.102 -19.755 12.624 23.648 Atomic orbital electron populations 1.21801 0.95431 1.01983 1.01890 1.21273 0.95303 0.94638 1.03488 1.21732 0.91595 1.00277 1.04582 1.20800 0.90463 0.83433 0.75522 1.90696 1.70639 1.31378 1.49668 1.45958 1.07233 1.09070 1.75514 1.21531 0.80292 0.95353 1.02889 1.23275 0.94430 0.91958 0.89593 0.90318 1.23286 0.94344 0.98467 1.02507 1.22736 0.98067 0.96386 0.98470 1.23657 0.88097 0.90464 0.94178 1.24188 0.97007 0.94229 0.95220 1.68373 1.41311 1.04525 1.02932 1.22441 0.98289 0.95695 0.95474 1.19665 0.84384 0.87276 0.85775 1.90514 1.51822 1.75157 1.28896 1.41859 1.52505 1.07290 1.18386 1.19645 1.36707 0.81580 1.04978 0.87986 1.25267 0.96845 1.00717 0.95133 1.69606 1.39922 1.36732 1.08040 0.85913 0.78655 0.81978 0.77636 1.19883 1.20969 1.19927 1.24391 1.01810 0.91608 0.95256 1.88386 1.39912 1.56936 1.42589 0.92667 0.92407 0.92573 0.91336 0.91257 0.88724 0.88892 0.75933 0.90326 0.90827 0.89540 0.89937 0.88968 0.89734 0.90903 0.88368 0.89051 0.92690 0.77484 0.91811 0.88990 0.90699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.91 37.16 0.37 -0.49 16 2 C -0.11 -0.80 5.22 -26.73 -0.14 -0.94 16 3 C -0.14 -0.96 5.70 -27.88 -0.16 -1.12 16 4 C 0.51 5.05 7.83 -10.98 -0.09 4.97 16 5 O -0.55 -7.47 15.98 5.56 0.09 -7.38 16 6 N -0.73 -6.21 5.48 -60.30 -0.33 -6.54 16 7 C 0.12 1.07 5.40 -4.04 -0.02 1.05 16 8 C 0.07 0.55 3.52 -25.67 -0.09 0.46 16 9 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 10 C -0.15 -1.12 6.58 -24.36 -0.16 -1.28 16 11 C -0.12 -1.18 6.32 -25.02 -0.16 -1.34 16 12 C 0.08 0.93 1.68 -90.02 -0.15 0.78 16 13 C 0.02 0.35 6.26 -3.04 -0.02 0.33 16 14 N -0.45 -7.41 5.91 -243.06 -1.44 -8.84 16 15 C 0.01 0.24 5.30 -4.98 -0.03 0.21 16 16 C 0.44 10.52 7.59 -10.98 -0.08 10.44 16 17 O -0.58 -15.63 15.13 5.54 0.08 -15.55 16 18 N -0.56 -14.34 5.29 -10.96 -0.06 -14.40 16 19 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 20 H 0.10 2.97 7.16 -52.48 -0.38 2.60 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.54 13.05 55.50 0.72 -23.81 16 23 Si 0.93 21.03 29.55 -169.99 -5.02 16.01 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 C 0.00 -0.02 7.41 -3.03 -0.02 -0.04 16 28 O -0.36 -4.10 10.67 -35.23 -0.38 -4.48 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 33 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.41 2.87 8.41 -40.82 -0.34 2.53 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.60 8.05 -51.93 -0.42 0.18 16 41 H 0.09 0.92 7.83 -51.93 -0.41 0.51 16 42 H 0.08 0.84 8.01 -51.93 -0.42 0.43 16 43 H 0.07 1.19 7.79 -51.92 -0.40 0.79 16 44 H 0.10 1.66 7.97 -51.93 -0.41 1.25 16 45 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 46 H 0.06 0.91 7.70 -51.93 -0.40 0.51 16 47 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 48 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 49 H 0.09 1.04 7.98 -51.93 -0.41 0.63 16 50 H 0.07 0.95 7.79 -51.93 -0.40 0.54 16 LS Contribution 408.81 15.07 6.16 6.16 Total: -1.00 -33.65 408.81 -9.68 -43.33 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: -8.52 Total: 10.50 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: -0.99 Total: 5.01 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: -1.10 Total: -53.60 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -0.20 Total: -27.41 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.65 -9.68 -43.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673523016.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.691 kcal (2) G-P(sol) polarization free energy of solvation -33.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds