Wall clock time and date at job start Tue Mar 31 2020 23:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50703 * 109.47466 * 180.02562 * 3 2 1 5 5 O 1.21278 * 119.99818 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99991 * 180.02562 * 4 3 2 7 7 C 1.46496 * 120.00012 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.47161 * 179.97438 * 7 6 4 9 9 H 1.09001 * 110.26541 * 60.62299 * 8 7 6 10 10 C 1.55008 * 110.30160 * 182.79577 * 8 7 6 11 11 C 1.55459 * 101.02556 * 155.01954 * 10 8 7 12 12 C 1.53780 * 102.01687 * 326.40652 * 11 10 8 13 13 C 1.53259 * 114.71793 * 151.72192 * 12 11 10 14 14 N 1.48088 * 85.98429 * 92.51607 * 13 12 11 15 15 C 1.46891 * 111.00289 * 137.14720 * 14 13 12 16 16 C 1.50701 * 109.47339 * 70.51320 * 15 14 13 17 17 O 1.21295 * 119.99921 * 359.97438 * 16 15 14 18 18 N 1.34778 * 120.00133 * 180.02562 * 16 15 14 19 19 C 1.37095 * 120.00083 * 179.97438 * 18 16 15 20 20 H 1.08003 * 119.99881 * 0.02562 * 19 18 16 21 21 C 1.38955 * 119.99969 * 179.97438 * 19 18 16 22 22 N 1.31404 * 119.99677 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99565 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47223 * 60.00301 * 23 21 19 25 25 H 1.48507 * 109.46492 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47356 * 299.99675 * 23 21 19 27 27 C 1.48085 * 90.87139 * 24.20411 * 14 13 12 28 28 O 1.42536 * 108.37371 * 20.95759 * 12 11 10 29 29 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 32 32 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 33 33 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 34 34 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 35 35 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 36 36 H 0.97004 * 120.00071 * 359.97438 * 6 4 3 37 37 H 1.08993 * 109.47156 * 300.00430 * 7 6 4 38 38 H 1.09002 * 109.47021 * 60.00038 * 7 6 4 39 39 H 1.09002 * 111.10859 * 272.95839 * 10 8 7 40 40 H 1.08996 * 111.10959 * 37.07720 * 10 8 7 41 41 H 1.08994 * 110.91811 * 208.22612 * 11 10 8 42 42 H 1.08994 * 110.95295 * 84.59769 * 11 10 8 43 43 H 1.09007 * 113.78750 * 206.77752 * 13 12 11 44 44 H 1.09000 * 113.79437 * 338.24374 * 13 12 11 45 45 H 1.09004 * 109.47183 * 190.51314 * 15 14 13 46 46 H 1.09003 * 109.47415 * 310.50948 * 15 14 13 47 47 H 0.97001 * 119.99632 * 359.97438 * 18 16 15 48 48 H 0.97009 * 119.99437 * 179.97438 * 22 21 19 49 49 H 1.09002 * 113.79227 * 221.52936 * 27 14 13 50 50 H 1.08999 * 113.79241 * 90.06073 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 8 4.1534 0.3922 -0.0015 6 7 4.2209 2.6097 -0.0002 7 6 5.6859 2.6098 -0.0003 8 6 6.1958 4.0523 -0.0004 9 1 5.8488 4.5755 0.8906 10 6 7.7441 4.0753 -0.0714 11 6 7.9919 5.4730 -0.7053 12 6 6.7771 5.6222 -1.6364 13 6 6.3364 7.0683 -1.8882 14 7 7.2207 7.0212 -3.0751 15 6 6.5754 7.6459 -4.2375 16 6 6.4968 9.1362 -4.0278 17 8 6.9349 9.6293 -3.0099 18 7 5.9389 9.9209 -4.9709 19 6 5.8670 11.2766 -4.7799 20 1 6.2578 11.7158 -3.8739 21 6 5.2923 12.0857 -5.7524 22 7 4.8173 11.5513 -6.8550 23 14 5.1949 13.9330 -5.4924 24 1 6.5648 14.4831 -5.3317 25 1 4.5420 14.5644 -6.6673 26 1 4.3999 14.2198 -4.2714 27 6 7.1034 5.5461 -3.1321 28 8 5.7542 4.7378 -1.1856 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 3.7359 3.4498 0.0001 37 1 6.0492 2.0956 0.8894 38 1 6.0492 2.0963 -0.8905 39 1 8.1837 4.0123 0.9241 40 1 8.1194 3.2801 -0.7153 41 1 8.9217 5.4831 -1.2739 42 1 7.9957 6.2517 0.0573 43 1 5.2787 7.1695 -2.1316 44 1 6.6669 7.7686 -1.1211 45 1 7.1590 7.4353 -5.1338 46 1 5.5699 7.2420 -4.3556 47 1 5.5883 9.5265 -5.7848 48 1 4.4157 12.1162 -7.5337 49 1 8.0425 5.0384 -3.3520 50 1 6.2740 5.1942 -3.7456 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673523016.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:53 Heat of formation + Delta-G solvation = -120.648323 kcal Electronic energy + Delta-G solvation = -29233.295317 eV Core-core repulsion = 25066.986922 eV Total energy + Delta-G solvation = -4166.308395 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.00031 -40.76395 -40.03976 -38.57049 -35.98586 -35.72075 -35.23177 -33.34755 -33.20100 -31.94138 -29.99854 -28.38161 -27.28944 -26.96590 -25.15968 -23.66210 -22.66814 -22.41933 -21.13924 -21.06201 -20.29618 -19.89554 -18.15522 -18.08092 -17.70511 -17.20699 -17.01173 -16.78860 -16.67679 -16.53840 -15.76003 -15.59319 -15.42642 -15.15775 -14.97639 -14.75698 -14.27068 -14.08776 -13.95771 -13.93302 -13.56301 -13.45773 -13.33801 -13.24653 -12.88514 -12.83760 -12.69766 -12.68368 -12.45653 -12.41031 -12.23398 -12.13400 -12.01338 -11.65865 -11.63233 -11.53864 -11.50331 -10.86938 -10.49268 -10.36252 -10.10265 -10.03646 -9.82918 -8.47861 -5.96888 1.38787 1.40714 1.51842 1.65128 2.02316 2.17793 2.27281 2.52656 2.88565 3.17716 3.22550 3.38296 3.53857 3.68625 3.83401 3.83717 4.01961 4.03507 4.10164 4.12887 4.23565 4.31313 4.38349 4.45635 4.49297 4.52557 4.58060 4.65160 4.68082 4.71327 4.77426 4.79142 4.87273 4.90198 4.93649 5.01796 5.08636 5.21216 5.22969 5.27587 5.30088 5.39402 5.40718 5.47957 5.83462 6.02750 6.05245 6.54347 6.57929 7.10571 7.25036 7.53371 8.08750 8.69337 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013332 B = 0.001988 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.749668 B =14081.634645 C =15576.723863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C -0.137 4.137 4 C 0.506 3.494 5 O -0.590 6.590 6 N -0.720 5.720 7 C 0.126 3.874 8 C 0.066 3.934 9 H 0.091 0.909 10 C -0.137 4.137 11 C -0.120 4.120 12 C 0.091 3.909 13 C 0.014 3.986 14 N -0.468 5.468 15 C 0.025 3.975 16 C 0.441 3.559 17 O -0.617 6.617 18 N -0.573 5.573 19 C -0.334 4.334 20 H 0.079 0.921 21 C -0.014 4.014 22 N -0.920 5.920 23 Si 0.994 3.006 24 H -0.272 1.272 25 H -0.270 1.270 26 H -0.271 1.271 27 C 0.004 3.996 28 O -0.371 6.371 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.051 0.949 34 H 0.109 0.891 35 H 0.116 0.884 36 H 0.414 0.586 37 H 0.087 0.913 38 H 0.060 0.940 39 H 0.109 0.891 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.081 0.919 43 H 0.060 0.940 44 H 0.076 0.924 45 H 0.110 0.890 46 H 0.073 0.927 47 H 0.396 0.604 48 H 0.278 0.722 49 H 0.112 0.888 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.341 -21.234 13.299 25.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.147 4.147 3 C -0.176 4.176 4 C 0.294 3.706 5 O -0.471 6.471 6 N -0.372 5.372 7 C 0.002 3.998 8 C 0.009 3.991 9 H 0.109 0.891 10 C -0.175 4.175 11 C -0.157 4.157 12 C 0.050 3.950 13 C -0.115 4.115 14 N -0.192 5.192 15 C -0.106 4.106 16 C 0.228 3.772 17 O -0.503 6.503 18 N -0.211 5.211 19 C -0.464 4.464 20 H 0.097 0.903 21 C -0.214 4.214 22 N -0.561 5.561 23 Si 0.817 3.183 24 H -0.197 1.197 25 H -0.195 1.195 26 H -0.196 1.196 27 C -0.124 4.124 28 O -0.289 6.289 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.127 0.873 35 H 0.135 0.865 36 H 0.250 0.750 37 H 0.105 0.895 38 H 0.078 0.922 39 H 0.128 0.872 40 H 0.108 0.892 41 H 0.112 0.888 42 H 0.100 0.900 43 H 0.078 0.922 44 H 0.095 0.905 45 H 0.128 0.872 46 H 0.090 0.910 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.130 0.870 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.269 -21.269 13.707 25.405 hybrid contribution -1.087 1.102 -0.794 1.740 sum -3.357 -20.167 12.913 24.181 Atomic orbital electron populations 1.21769 0.93883 1.02366 1.02640 1.21247 0.96578 0.94841 1.02041 1.21772 0.89275 1.00220 1.06346 1.21357 0.91708 0.82961 0.74533 1.90676 1.71697 1.32874 1.51842 1.45973 1.07369 1.09202 1.74610 1.21500 0.80382 0.95292 1.02620 1.23412 0.95278 0.91551 0.88889 0.89136 1.23282 0.93465 0.96959 1.03786 1.22746 0.96998 0.97867 0.98115 1.23423 0.88819 0.88205 0.94518 1.24148 0.96069 0.96608 0.94721 1.68349 1.41411 1.07001 1.02420 1.22326 0.99926 0.91386 0.96996 1.20663 0.82427 0.89567 0.84529 1.90483 1.52921 1.76613 1.30243 1.41934 1.53228 1.06895 1.19012 1.19626 1.38565 0.83147 1.05015 0.90271 1.26066 0.95837 1.04889 0.94563 1.69670 1.39756 1.38281 1.08395 0.84975 0.78668 0.76622 0.77991 1.19712 1.19460 1.19627 1.24445 1.03076 0.89048 0.95831 1.88368 1.40022 1.56801 1.43758 0.91628 0.92296 0.92037 0.92557 0.93045 0.87275 0.86549 0.74950 0.89522 0.92193 0.87224 0.89225 0.88775 0.89994 0.92202 0.90544 0.87154 0.90959 0.77059 0.91267 0.86974 0.90183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.91 71.98 0.71 -0.75 16 2 C -0.11 -1.54 5.22 30.59 0.16 -1.38 16 3 C -0.14 -1.64 5.70 29.85 0.17 -1.47 16 4 C 0.51 9.56 7.83 87.66 0.69 10.24 16 5 O -0.59 -16.15 15.98 -3.02 -0.05 -16.20 16 6 N -0.72 -11.25 5.48 -463.08 -2.54 -13.79 16 7 C 0.13 1.98 5.40 86.38 0.47 2.44 16 8 C 0.07 0.98 3.52 31.28 0.11 1.09 16 9 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 10 C -0.14 -1.70 6.58 32.13 0.21 -1.49 16 11 C -0.12 -2.16 6.32 31.70 0.20 -1.96 16 12 C 0.09 2.09 1.68 -10.32 -0.02 2.08 16 13 C 0.01 0.43 6.26 86.16 0.54 0.97 16 14 N -0.47 -15.18 5.91 -927.47 -5.49 -20.67 16 15 C 0.03 0.90 5.30 85.56 0.45 1.35 16 16 C 0.44 21.29 7.59 87.66 0.67 21.95 16 17 O -0.62 -34.27 15.13 -3.08 -0.05 -34.32 16 18 N -0.57 -29.77 5.29 -306.97 -1.62 -31.39 16 19 C -0.33 -19.07 9.68 84.04 0.81 -18.26 16 20 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 21 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 22 N -0.92 -49.83 13.05 21.66 0.28 -49.55 16 23 Si 0.99 42.93 29.55 68.60 2.03 44.96 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 25 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 26 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 27 C 0.00 0.10 7.41 86.16 0.64 0.74 16 28 O -0.37 -7.84 10.67 -148.98 -1.59 -9.43 16 29 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 32 H 0.06 0.92 8.10 -2.39 -0.02 0.90 16 33 H 0.05 0.89 8.10 -2.39 -0.02 0.87 16 34 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.41 5.10 8.41 -92.71 -0.78 4.32 16 37 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.09 1.03 8.05 -2.39 -0.02 1.02 16 41 H 0.09 1.69 7.83 -2.39 -0.02 1.67 16 42 H 0.08 1.54 8.01 -2.39 -0.02 1.52 16 43 H 0.06 2.00 7.79 -2.38 -0.02 1.98 16 44 H 0.08 2.70 7.97 -2.39 -0.02 2.68 16 45 H 0.11 3.49 8.14 -2.38 -0.02 3.47 16 46 H 0.07 2.32 7.70 -2.39 -0.02 2.30 16 47 H 0.40 19.54 7.90 -92.71 -0.73 18.81 16 48 H 0.28 14.10 8.31 -92.70 -0.77 13.33 16 49 H 0.11 2.24 7.98 -2.39 -0.02 2.22 16 50 H 0.08 1.85 7.79 -2.39 -0.02 1.83 16 Total: -1.00 -74.29 408.81 -3.31 -77.60 By element: Atomic # 1 Polarization: 38.05 SS G_CDS: -0.57 Total: 37.49 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: 6.28 Total: 15.29 kcal Atomic # 7 Polarization: -106.03 SS G_CDS: -9.36 Total: -115.40 kcal Atomic # 8 Polarization: -58.26 SS G_CDS: -1.68 Total: -59.94 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -74.29 -3.31 -77.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673523016.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.052 kcal (2) G-P(sol) polarization free energy of solvation -74.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds