Wall clock time and date at job start Tue Mar 31 2020 23:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47237 * 2 1 4 4 H 1.08998 * 110.53989 * 52.38547 * 3 2 1 5 5 C 1.54807 * 110.48957 * 289.76638 * 3 2 1 6 6 C 1.54991 * 102.09479 * 220.44221 * 5 3 2 7 7 O 1.44376 * 103.48862 * 37.02511 * 6 5 3 8 8 C 1.43745 * 106.97768 * 319.93482 * 7 6 5 9 9 H 1.08991 * 109.88339 * 266.94607 * 8 7 6 10 10 C 1.50695 * 109.87861 * 145.93566 * 8 7 6 11 11 O 1.21279 * 120.00402 * 356.46344 * 10 8 7 12 12 N 1.34780 * 120.00312 * 176.45541 * 10 8 7 13 13 C 1.46494 * 120.00489 * 180.02562 * 12 10 8 14 14 H 1.09003 * 112.90618 * 23.75034 * 13 12 10 15 15 C 1.53777 * 113.61564 * 154.99930 * 13 12 10 16 16 C 1.53784 * 87.08138 * 89.11942 * 15 13 12 17 17 H 1.09004 * 113.61004 * 270.80368 * 16 15 13 18 18 N 1.46901 * 113.61760 * 139.97871 * 16 15 13 19 19 C 1.46898 * 110.99614 * 154.99981 * 18 16 15 20 20 C 1.50706 * 109.46984 * 180.02562 * 19 18 16 21 21 O 1.21295 * 119.99863 * 359.97438 * 20 19 18 22 22 N 1.34773 * 120.00080 * 180.02562 * 20 19 18 23 23 C 1.37105 * 119.99873 * 180.02562 * 22 20 19 24 24 H 1.08000 * 119.99509 * 359.71860 * 23 22 20 25 25 C 1.38950 * 120.00048 * 179.72298 * 23 22 20 26 26 N 1.31413 * 119.99930 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 119.99918 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.47151 * 359.97438 * 27 25 23 29 29 H 1.48503 * 109.47086 * 119.99941 * 27 25 23 30 30 H 1.48500 * 109.46879 * 239.99997 * 27 25 23 31 31 C 1.53780 * 113.61539 * 252.50246 * 13 12 10 32 32 H 1.09001 * 109.47376 * 59.99995 * 1 2 3 33 33 H 1.08998 * 109.47283 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.47508 * 300.00263 * 1 2 3 35 35 H 1.09003 * 109.47579 * 240.00289 * 2 1 3 36 36 H 1.09001 * 109.47376 * 120.00005 * 2 1 3 37 37 H 1.09001 * 110.91060 * 102.24231 * 5 3 2 38 38 H 1.09004 * 110.90874 * 338.64472 * 5 3 2 39 39 H 1.09000 * 110.62114 * 278.52294 * 6 5 3 40 40 H 1.08999 * 110.62059 * 155.52364 * 6 5 3 41 41 H 0.97003 * 119.99198 * 0.02562 * 12 10 8 42 42 H 1.09000 * 113.61671 * 334.57622 * 15 13 12 43 43 H 1.09002 * 113.69353 * 203.67678 * 15 13 12 44 44 H 1.00890 * 111.00276 * 278.95789 * 18 16 15 45 45 H 1.09004 * 109.47320 * 60.00702 * 19 18 16 46 46 H 1.09001 * 109.47291 * 299.99999 * 19 18 16 47 47 H 0.96996 * 119.99858 * 359.72084 * 22 20 19 48 48 H 0.96999 * 119.99993 * 179.97438 * 26 25 23 49 49 H 1.09000 * 113.61221 * 156.33569 * 31 13 12 50 50 H 1.08994 * 113.61751 * 25.42783 * 31 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5801 2.0107 0.8085 5 6 1.7582 2.1169 -1.3647 6 6 3.0603 2.9231 -1.6035 7 8 4.0920 2.0593 -1.0801 8 6 3.5756 1.4717 0.1259 9 1 3.8678 2.0737 0.9861 10 6 4.1038 0.0687 0.2792 11 8 4.7987 -0.4159 -0.5886 12 7 3.8042 -0.6476 1.3809 13 6 4.3181 -2.0113 1.5303 14 1 5.2191 -2.1917 0.9439 15 6 4.4336 -2.4692 2.9937 16 6 2.9856 -2.9717 2.8685 17 1 2.2389 -2.2200 3.1246 18 7 2.7500 -4.2599 3.5342 19 6 1.3366 -4.4099 3.9051 20 6 1.1340 -5.7398 4.5845 21 8 2.0745 -6.4891 4.7436 22 7 -0.0924 -6.0971 5.0144 23 6 -0.2765 -7.3067 5.6330 24 1 0.5604 -7.9752 5.7716 25 6 -1.5397 -7.6726 6.0813 26 7 -2.5579 -6.8590 5.9130 27 14 -1.7907 -9.3210 6.9235 28 1 -0.4962 -10.0457 6.9888 29 1 -2.3053 -9.1009 8.2990 30 1 -2.7703 -10.1271 6.1515 31 6 3.2430 -3.0972 1.3575 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3634 0.5139 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 0.8961 2.7807 -1.3000 38 1 1.6145 1.3699 -2.1454 39 1 3.0342 3.8653 -1.0561 40 1 3.2120 3.1007 -2.6682 41 1 3.2481 -0.2601 2.0749 42 1 4.5510 -1.6476 3.7004 43 1 5.1608 -3.2666 3.1471 44 1 3.0553 -5.0274 2.9550 45 1 0.7185 -4.3618 3.0085 46 1 1.0524 -3.6075 4.5859 47 1 -0.8438 -5.4965 4.8901 48 1 -3.4398 -7.1145 6.2256 49 1 3.6449 -4.0663 1.0621 50 1 2.3994 -2.7826 0.7433 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690278379.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:36 Heat of formation + Delta-G solvation = -117.537667 kcal Electronic energy + Delta-G solvation = -29864.794957 eV Core-core repulsion = 25698.621451 eV Total energy + Delta-G solvation = -4166.173507 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.96885 -40.57294 -39.93593 -38.87832 -36.23493 -35.95181 -35.18734 -33.53385 -33.16855 -31.27524 -30.31567 -28.38881 -26.65220 -26.20233 -25.03740 -24.22513 -23.43120 -22.41418 -21.22081 -20.96464 -20.44026 -19.86877 -18.25915 -17.82640 -17.70456 -17.31115 -16.89124 -16.42411 -16.35128 -16.14580 -15.96656 -15.80262 -15.54318 -15.31867 -15.29632 -14.61980 -14.37525 -14.31428 -14.24620 -13.54668 -13.53631 -13.48734 -13.45434 -13.12878 -13.05680 -12.83438 -12.62638 -12.55302 -12.39659 -12.20559 -12.11590 -12.09248 -11.79995 -11.63847 -11.52987 -11.50883 -11.36569 -11.11463 -10.50846 -10.32091 -10.00681 -9.97652 -9.21974 -8.46578 -5.94874 1.36707 1.42267 1.50954 1.56162 1.86484 2.06443 2.29612 2.96410 3.01258 3.20975 3.36862 3.44925 3.57608 3.61511 3.69756 3.74158 3.97191 3.99099 4.07963 4.21103 4.26804 4.33906 4.39744 4.46721 4.51954 4.53348 4.58435 4.62306 4.73446 4.80349 4.81637 4.84337 4.88972 4.96314 4.98897 5.04231 5.12215 5.13864 5.18980 5.24727 5.41522 5.41812 5.52191 5.79821 5.94604 6.18212 6.40954 6.49619 6.61112 7.13601 7.19047 7.57471 8.13071 8.70945 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020229 B = 0.002008 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.808067 B =13940.707346 C =15039.090433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.135 4.135 3 C -0.106 4.106 4 H 0.128 0.872 5 C -0.146 4.146 6 C 0.038 3.962 7 O -0.387 6.387 8 C 0.060 3.940 9 H 0.123 0.877 10 C 0.519 3.481 11 O -0.574 6.574 12 N -0.693 5.693 13 C 0.126 3.874 14 H 0.084 0.916 15 C -0.123 4.123 16 C 0.071 3.929 17 H 0.116 0.884 18 N -0.671 5.671 19 C 0.066 3.934 20 C 0.436 3.564 21 O -0.625 6.625 22 N -0.573 5.573 23 C -0.333 4.333 24 H 0.077 0.923 25 C -0.013 4.013 26 N -0.919 5.919 27 Si 0.991 3.009 28 H -0.275 1.275 29 H -0.270 1.270 30 H -0.271 1.271 31 C -0.177 4.177 32 H 0.057 0.943 33 H 0.046 0.954 34 H 0.072 0.928 35 H 0.036 0.964 36 H 0.085 0.915 37 H 0.110 0.890 38 H 0.063 0.937 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.418 0.582 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.345 0.655 45 H 0.066 0.934 46 H 0.108 0.892 47 H 0.397 0.603 48 H 0.277 0.723 49 H 0.086 0.914 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.407 24.481 -11.535 27.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C -0.124 4.124 4 H 0.146 0.854 5 C -0.184 4.184 6 C -0.038 4.038 7 O -0.306 6.306 8 C -0.001 4.001 9 H 0.140 0.860 10 C 0.306 3.694 11 O -0.453 6.453 12 N -0.348 5.348 13 C 0.019 3.981 14 H 0.103 0.897 15 C -0.162 4.162 16 C -0.039 4.039 17 H 0.134 0.866 18 N -0.302 5.302 19 C -0.066 4.066 20 C 0.223 3.777 21 O -0.512 6.512 22 N -0.211 5.211 23 C -0.462 4.462 24 H 0.095 0.905 25 C -0.213 4.213 26 N -0.560 5.560 27 Si 0.815 3.185 28 H -0.199 1.199 29 H -0.196 1.196 30 H -0.196 1.196 31 C -0.217 4.217 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.055 0.945 36 H 0.104 0.896 37 H 0.128 0.872 38 H 0.082 0.918 39 H 0.105 0.895 40 H 0.116 0.884 41 H 0.257 0.743 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.165 0.835 45 H 0.084 0.916 46 H 0.126 0.874 47 H 0.231 0.769 48 H 0.087 0.913 49 H 0.104 0.896 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.716 23.811 -11.457 27.036 hybrid contribution -1.220 -0.925 -0.383 1.578 sum 4.496 22.887 -11.840 26.157 Atomic orbital electron populations 1.21736 0.94168 1.01809 1.02771 1.22048 0.97511 0.95293 1.02422 1.22649 0.91241 0.98008 1.00536 0.85385 1.23247 0.99168 0.99807 0.96163 1.23873 0.85643 0.93599 1.00692 1.88977 1.39724 1.62036 1.39832 1.22957 0.95168 0.90883 0.91134 0.85956 1.20933 0.79020 0.88102 0.81349 1.90704 1.39439 1.72626 1.42483 1.45682 1.53055 1.14349 1.21680 1.21572 0.97039 0.81183 0.98278 0.89739 1.23387 0.97147 1.01277 0.94354 1.23253 0.98198 0.91595 0.90894 0.86609 1.60044 1.17096 1.04606 1.48447 1.21588 0.90834 0.94472 0.99754 1.20998 0.82693 0.90171 0.83811 1.90497 1.42097 1.56163 1.62428 1.41940 1.08864 1.17913 1.52355 1.19688 0.95384 0.95857 1.35307 0.90465 1.26017 0.94386 1.02817 0.98068 1.69669 1.00935 1.38032 1.47400 0.84891 0.78145 0.77352 0.78073 1.19921 1.19564 1.19643 1.24149 0.99734 0.99620 0.98212 0.92403 0.93463 0.90904 0.94540 0.89640 0.87154 0.91800 0.89450 0.88417 0.74296 0.89075 0.88962 0.83547 0.91650 0.87364 0.76909 0.91307 0.89599 0.91035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.79 71.98 0.70 -0.89 16 2 C -0.14 -1.70 4.15 30.59 0.13 -1.58 16 3 C -0.11 -0.98 3.04 -9.80 -0.03 -1.01 16 4 H 0.13 0.42 8.14 -2.39 -0.02 0.40 16 5 C -0.15 -1.36 6.03 31.89 0.19 -1.17 16 6 C 0.04 0.43 7.72 72.66 0.56 0.99 16 7 O -0.39 -7.94 10.74 -130.27 -1.40 -9.34 16 8 C 0.06 0.87 3.84 30.22 0.12 0.99 16 9 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 10 C 0.52 10.78 5.66 87.65 0.50 11.28 16 11 O -0.57 -18.34 16.13 15.68 0.25 -18.09 16 12 N -0.69 -10.26 3.46 -440.06 -1.52 -11.79 16 13 C 0.13 2.31 4.32 45.52 0.20 2.51 16 14 H 0.08 1.95 7.47 -2.39 -0.02 1.94 16 15 C -0.12 -2.15 7.63 31.12 0.24 -1.91 16 16 C 0.07 1.38 4.06 45.44 0.18 1.56 16 17 H 0.12 1.77 7.87 -2.39 -0.02 1.75 16 18 N -0.67 -19.47 6.24 -492.82 -3.08 -22.55 16 19 C 0.07 2.10 6.01 85.56 0.51 2.61 16 20 C 0.44 20.26 7.82 87.66 0.69 20.95 16 21 O -0.63 -34.39 15.78 -3.08 -0.05 -34.44 16 22 N -0.57 -28.89 5.29 -306.97 -1.62 -30.51 16 23 C -0.33 -18.77 9.68 84.04 0.81 -17.95 16 24 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 25 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 26 N -0.92 -48.88 13.05 21.66 0.28 -48.59 16 27 Si 0.99 42.66 29.55 68.60 2.03 44.68 16 28 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 29 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 30 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 31 C -0.18 -3.44 7.49 31.12 0.23 -3.21 16 32 H 0.06 0.58 7.63 -2.39 -0.02 0.56 16 33 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.04 0.69 7.70 -2.39 -0.02 0.67 16 36 H 0.09 1.00 4.60 -2.39 -0.01 0.99 16 37 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.06 0.83 7.77 -2.39 -0.02 0.81 16 39 H 0.09 0.57 8.14 -2.39 -0.02 0.56 16 40 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.42 3.47 7.80 -92.71 -0.72 2.75 16 42 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.34 10.94 7.89 -89.70 -0.71 10.24 16 45 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.11 2.99 8.13 -2.39 -0.02 2.97 16 47 H 0.40 18.81 7.90 -92.71 -0.73 18.08 16 48 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 49 H 0.09 1.83 7.82 -2.39 -0.02 1.81 16 50 H 0.07 1.39 7.87 -2.39 -0.02 1.37 16 Total: -1.00 -77.94 401.65 -0.80 -78.73 By element: Atomic # 1 Polarization: 40.15 SS G_CDS: -1.19 Total: 38.97 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: 5.50 Total: 12.93 kcal Atomic # 7 Polarization: -107.51 SS G_CDS: -5.94 Total: -113.45 kcal Atomic # 8 Polarization: -60.67 SS G_CDS: -1.19 Total: -61.86 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal Total: -77.94 -0.80 -78.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690278379.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.807 kcal (2) G-P(sol) polarization free energy of solvation -77.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds