Wall clock time and date at job start Tue Mar 31 2020 23:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46803 * 2 1 4 4 H 1.08993 * 110.27800 * 52.90852 * 3 2 1 5 5 C 1.54949 * 110.30823 * 175.00446 * 3 2 1 6 6 C 1.55306 * 100.94317 * 155.46028 * 5 3 2 7 7 C 1.54379 * 102.24947 * 325.86196 * 6 5 3 8 8 H 1.08999 * 109.83245 * 261.75437 * 7 6 5 9 9 C 1.50703 * 109.83114 * 140.87494 * 7 6 5 10 10 O 1.21279 * 119.99804 * 244.99769 * 9 7 6 11 11 N 1.34772 * 120.00058 * 64.99335 * 9 7 6 12 12 C 1.46499 * 120.00032 * 180.02562 * 11 9 7 13 13 H 1.08995 * 112.85175 * 23.80620 * 12 11 9 14 14 C 1.53782 * 113.61570 * 155.00534 * 12 11 9 15 15 C 1.53777 * 87.08581 * 140.06396 * 14 12 11 16 16 H 1.08999 * 113.61156 * 89.19790 * 15 14 12 17 17 N 1.46895 * 113.62179 * 220.02073 * 15 14 12 18 18 C 1.46893 * 111.00318 * 205.00006 * 17 15 14 19 19 C 1.50708 * 109.47146 * 179.97438 * 18 17 15 20 20 O 1.21288 * 119.99815 * 359.97438 * 19 18 17 21 21 N 1.34774 * 119.99719 * 180.02562 * 19 18 17 22 22 C 1.37101 * 119.99349 * 180.02562 * 21 19 18 23 23 H 1.07991 * 120.00515 * 359.97438 * 22 21 19 24 24 C 1.38955 * 119.99490 * 179.97438 * 22 21 19 25 25 N 1.31413 * 120.00236 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99845 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47187 * 179.97438 * 26 24 22 28 28 H 1.48502 * 109.47194 * 300.00675 * 26 24 22 29 29 H 1.48498 * 109.47018 * 60.00238 * 26 24 22 30 30 C 1.53785 * 87.08100 * 334.56788 * 15 14 12 31 31 O 1.43241 * 107.59243 * 21.35921 * 7 6 5 32 32 H 1.09000 * 109.47074 * 60.00155 * 1 2 3 33 33 H 1.09002 * 109.47171 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.47433 * 299.99672 * 1 2 3 35 35 H 1.09004 * 109.47090 * 240.00244 * 2 1 3 36 36 H 1.09000 * 109.47074 * 119.99845 * 2 1 3 37 37 H 1.08992 * 111.12952 * 37.53577 * 5 3 2 38 38 H 1.09005 * 111.15534 * 273.38851 * 5 3 2 39 39 H 1.09003 * 110.84638 * 207.67536 * 6 5 3 40 40 H 1.08997 * 111.02515 * 84.13117 * 6 5 3 41 41 H 0.96999 * 120.00192 * 0.02562 * 11 9 7 42 42 H 1.09002 * 113.61096 * 25.51398 * 14 12 11 43 43 H 1.08993 * 113.69063 * 254.62632 * 14 12 11 44 44 H 1.00899 * 111.00063 * 81.04183 * 17 15 14 45 45 H 1.09002 * 109.47091 * 59.99845 * 18 17 15 46 46 H 1.09000 * 109.47343 * 299.99463 * 18 17 15 47 47 H 0.96996 * 120.00564 * 359.97438 * 21 19 18 48 48 H 0.97001 * 119.99781 * 179.97438 * 25 24 22 49 49 H 1.08998 * 113.61564 * 139.97579 * 30 15 14 50 50 H 1.09001 * 113.61372 * 270.88076 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5845 2.0042 0.8155 5 6 3.5841 1.4671 0.1265 6 6 3.9112 2.8397 -0.5222 7 6 2.8316 2.9487 -1.6203 8 1 3.2493 2.6466 -2.5807 9 6 2.3297 4.3671 -1.7049 10 8 1.1775 4.6204 -1.4233 11 7 3.1611 5.3541 -2.0932 12 6 2.6732 6.7331 -2.1749 13 1 1.8089 6.9148 -1.5362 14 6 3.7818 7.7886 -2.0262 15 6 3.0654 8.5827 -3.1311 16 1 2.3092 9.2711 -2.7537 17 7 3.9813 9.2122 -4.0917 18 6 3.3575 10.3816 -4.7252 19 6 4.3250 10.9999 -5.7014 20 8 5.4260 10.5144 -5.8538 21 7 3.9671 12.0928 -6.4041 22 6 4.8472 12.6549 -7.2925 23 1 5.8272 12.2222 -7.4289 24 6 4.4780 13.7814 -8.0174 25 7 3.2853 14.3077 -7.8519 26 14 5.6773 14.5478 -9.2274 27 1 5.0465 15.7295 -9.8683 28 1 6.9048 14.9711 -8.5068 29 1 6.0337 13.5516 -10.2693 30 6 2.4923 7.2403 -3.6154 31 8 1.7568 2.0735 -1.2590 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3634 0.5138 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 4.0373 0.6496 -0.4341 38 1 3.8936 1.4427 1.1714 39 1 4.9098 2.8341 -0.9592 40 1 3.8110 3.6483 0.2019 41 1 4.0825 5.1515 -2.3187 42 1 4.7688 7.4289 -2.3170 43 1 3.7821 8.2899 -1.0584 44 1 4.2911 8.5477 -4.7848 45 1 3.0962 11.1130 -3.9604 46 1 2.4563 10.0709 -5.2538 47 1 3.0868 12.4812 -6.2819 48 1 3.0278 15.0943 -8.3577 49 1 1.4503 7.2984 -3.9301 50 1 3.1268 6.7309 -4.3406 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690339406.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:28 Heat of formation + Delta-G solvation = -106.538957 kcal Electronic energy + Delta-G solvation = -28580.276000 eV Core-core repulsion = 24414.579434 eV Total energy + Delta-G solvation = -4165.696567 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.86537 -39.70313 -38.42697 -37.84961 -34.65241 -34.08438 -33.86738 -32.92195 -32.17250 -31.19040 -29.16270 -26.83685 -25.79510 -25.08156 -24.16060 -22.77618 -22.32034 -21.45975 -20.63827 -20.02200 -19.14161 -17.95958 -17.86279 -17.10283 -16.56996 -16.45514 -15.94819 -15.45695 -14.99405 -14.94491 -14.54773 -14.46573 -14.42272 -14.06066 -13.83957 -13.67826 -13.39472 -13.32091 -13.23593 -12.87528 -12.59162 -12.43383 -12.27432 -12.11647 -11.95660 -11.65154 -11.56356 -11.54074 -11.29744 -11.25778 -11.08641 -11.04710 -10.98048 -10.83692 -10.51245 -10.44351 -10.21277 -9.55039 -9.50198 -9.23547 -8.45347 -8.02985 -7.95385 -6.41617 -3.82625 2.32277 2.69702 3.20050 3.25849 3.30128 3.41612 3.88354 3.90886 4.09834 4.14669 4.24266 4.29969 4.47578 4.49507 4.54910 4.61786 4.71005 4.76472 4.83758 4.87649 4.94378 4.99311 5.17068 5.18290 5.25116 5.27367 5.30841 5.42055 5.45689 5.54440 5.56006 5.61284 5.65622 5.76907 5.78389 5.82783 5.90354 5.95685 5.96490 6.01878 6.26573 6.36195 6.52728 7.22045 7.27132 7.54885 7.64500 7.98279 8.06018 8.61163 9.17608 9.54270 10.05624 10.75973 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.036691 B = 0.001464 C = 0.001448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.937076 B =19123.891474 C =19333.157878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C 0.076 3.924 4 H 0.073 0.927 5 C -0.151 4.151 6 C -0.147 4.147 7 C 0.065 3.935 8 H 0.106 0.894 9 C 0.500 3.500 10 O -0.524 6.524 11 N -0.716 5.716 12 C 0.122 3.878 13 H 0.114 0.886 14 C -0.132 4.132 15 C 0.071 3.929 16 H 0.100 0.900 17 N -0.654 5.654 18 C 0.049 3.951 19 C 0.440 3.560 20 O -0.585 6.585 21 N -0.563 5.563 22 C -0.301 4.301 23 H 0.102 0.898 24 C 0.023 3.977 25 N -0.901 5.901 26 Si 0.931 3.069 27 H -0.284 1.284 28 H -0.273 1.273 29 H -0.274 1.274 30 C -0.181 4.181 31 O -0.345 6.345 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.401 0.599 42 H 0.091 0.909 43 H 0.075 0.925 44 H 0.351 0.649 45 H 0.086 0.914 46 H 0.045 0.955 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.071 0.929 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.521 -25.870 17.409 31.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C 0.018 3.982 4 H 0.091 0.909 5 C -0.188 4.188 6 C -0.184 4.184 7 C 0.003 3.997 8 H 0.124 0.876 9 C 0.285 3.715 10 O -0.398 6.398 11 N -0.368 5.368 12 C 0.017 3.983 13 H 0.132 0.868 14 C -0.171 4.171 15 C -0.041 4.041 16 H 0.118 0.882 17 N -0.286 5.286 18 C -0.083 4.083 19 C 0.225 3.775 20 O -0.469 6.469 21 N -0.200 5.200 22 C -0.431 4.431 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.758 3.242 27 H -0.210 1.210 28 H -0.199 1.199 29 H -0.199 1.199 30 C -0.222 4.222 31 O -0.263 6.263 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.111 0.889 40 H 0.101 0.899 41 H 0.235 0.765 42 H 0.110 0.890 43 H 0.094 0.906 44 H 0.172 0.828 45 H 0.105 0.895 46 H 0.063 0.937 47 H 0.226 0.774 48 H 0.082 0.918 49 H 0.090 0.910 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.584 -25.496 17.762 31.180 hybrid contribution -0.041 0.332 -1.222 1.267 sum -2.625 -25.164 16.540 30.227 Atomic orbital electron populations 1.21733 0.95067 1.01510 1.02615 1.21650 0.97100 0.94343 1.02628 1.23145 0.94027 0.94121 0.86866 0.90940 1.23330 0.95904 0.97169 1.02411 1.23108 0.98975 0.98758 0.97604 1.22628 0.88151 0.88449 1.00450 0.87623 1.21045 0.86365 0.87291 0.76789 1.90716 1.17756 1.83620 1.47747 1.45967 1.14408 1.07431 1.69026 1.22413 0.98785 0.79497 0.97613 0.86827 1.23466 0.98411 0.95569 0.99675 1.22811 0.94003 0.92887 0.94370 0.88235 1.60009 1.37717 1.09947 1.20883 1.21726 0.95564 0.93803 0.97239 1.19828 0.88922 0.83777 0.84935 1.90514 1.22906 1.64207 1.69320 1.41861 1.16740 1.24902 1.36452 1.19659 0.98136 1.09038 1.16236 0.87978 1.25263 0.96937 0.96916 0.98760 1.69606 1.19094 1.23176 1.42391 0.85915 0.79877 0.78312 0.80091 1.20970 1.19878 1.19936 1.24242 1.02427 0.98238 0.97286 1.88546 1.41721 1.58168 1.37858 0.91831 0.92768 0.92782 0.91109 0.90679 0.89796 0.89463 0.88855 0.89861 0.76463 0.89004 0.90629 0.82835 0.89546 0.93730 0.77436 0.91811 0.91046 0.89422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.85 37.16 0.37 -0.68 16 2 C -0.12 -0.71 5.67 -26.73 -0.15 -0.87 16 3 C 0.08 0.55 3.40 -25.70 -0.09 0.47 16 4 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 5 C -0.15 -0.71 6.57 -24.48 -0.16 -0.87 16 6 C -0.15 -0.75 6.52 -24.79 -0.16 -0.91 16 7 C 0.06 0.52 3.95 -27.16 -0.11 0.41 16 8 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 9 C 0.50 5.38 7.03 -10.99 -0.08 5.30 16 10 O -0.52 -8.08 16.12 -14.10 -0.23 -8.31 16 11 N -0.72 -6.08 5.33 -53.02 -0.28 -6.36 16 12 C 0.12 1.20 4.24 -67.11 -0.28 0.91 16 13 H 0.11 1.27 7.46 -51.93 -0.39 0.88 16 14 C -0.13 -1.28 7.63 -25.92 -0.20 -1.48 16 15 C 0.07 0.83 4.18 -66.90 -0.28 0.55 16 16 H 0.10 1.11 7.87 -51.93 -0.41 0.70 16 17 N -0.65 -10.13 6.24 -107.14 -0.67 -10.79 16 18 C 0.05 0.86 6.01 -4.98 -0.03 0.83 16 19 C 0.44 10.34 7.82 -10.98 -0.09 10.26 16 20 O -0.59 -15.79 15.78 5.55 0.09 -15.70 16 21 N -0.56 -14.28 5.29 -10.96 -0.06 -14.34 16 22 C -0.30 -8.41 9.68 -14.93 -0.14 -8.56 16 23 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 24 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 25 N -0.90 -24.54 13.05 55.50 0.72 -23.82 16 26 Si 0.93 21.04 29.55 -169.99 -5.02 16.02 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 29 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 30 C -0.18 -1.93 7.50 -25.91 -0.19 -2.13 16 31 O -0.35 -3.57 10.02 -54.89 -0.55 -4.12 16 32 H 0.06 0.55 7.99 -51.93 -0.42 0.14 16 33 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.08 0.32 8.06 -51.93 -0.42 -0.09 16 38 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.08 0.47 7.84 -51.93 -0.41 0.06 16 41 H 0.40 2.33 8.73 -40.82 -0.36 1.98 16 42 H 0.09 0.88 8.12 -51.93 -0.42 0.46 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.35 5.60 7.90 -39.29 -0.31 5.29 16 45 H 0.09 1.39 8.13 -51.93 -0.42 0.97 16 46 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 47 H 0.39 9.52 7.90 -40.82 -0.32 9.19 16 48 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 49 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 50 H 0.09 0.93 7.82 -51.93 -0.41 0.52 16 LS Contribution 411.08 15.07 6.19 6.19 Total: -1.00 -34.73 411.08 -9.93 -44.66 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: -8.44 Total: 12.81 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -1.69 Total: 3.76 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: -0.29 Total: -55.31 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -0.69 Total: -28.14 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.73 -9.93 -44.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690339406.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.877 kcal (2) G-P(sol) polarization free energy of solvation -34.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds