Wall clock time and date at job start Tue Mar 31 2020 23:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46803 * 2 1 4 4 H 1.08993 * 110.27800 * 52.90852 * 3 2 1 5 5 C 1.54949 * 110.30823 * 175.00446 * 3 2 1 6 6 C 1.55306 * 100.94317 * 155.46028 * 5 3 2 7 7 C 1.54379 * 102.24947 * 325.86196 * 6 5 3 8 8 H 1.08999 * 109.83245 * 261.75437 * 7 6 5 9 9 C 1.50703 * 109.83114 * 140.87494 * 7 6 5 10 10 O 1.21279 * 119.99804 * 244.99769 * 9 7 6 11 11 N 1.34772 * 120.00058 * 64.99335 * 9 7 6 12 12 C 1.46499 * 120.00032 * 180.02562 * 11 9 7 13 13 H 1.08995 * 112.85175 * 23.80620 * 12 11 9 14 14 C 1.53782 * 113.61570 * 155.00534 * 12 11 9 15 15 C 1.53777 * 87.08581 * 140.06396 * 14 12 11 16 16 H 1.08999 * 113.61156 * 89.19790 * 15 14 12 17 17 N 1.46895 * 113.62179 * 220.02073 * 15 14 12 18 18 C 1.46893 * 111.00318 * 205.00006 * 17 15 14 19 19 C 1.50708 * 109.47146 * 179.97438 * 18 17 15 20 20 O 1.21288 * 119.99815 * 359.97438 * 19 18 17 21 21 N 1.34774 * 119.99719 * 180.02562 * 19 18 17 22 22 C 1.37101 * 119.99349 * 180.02562 * 21 19 18 23 23 H 1.07991 * 120.00515 * 359.97438 * 22 21 19 24 24 C 1.38955 * 119.99490 * 179.97438 * 22 21 19 25 25 N 1.31413 * 120.00236 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99845 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47187 * 179.97438 * 26 24 22 28 28 H 1.48502 * 109.47194 * 300.00675 * 26 24 22 29 29 H 1.48498 * 109.47018 * 60.00238 * 26 24 22 30 30 C 1.53785 * 87.08100 * 334.56788 * 15 14 12 31 31 O 1.43241 * 107.59243 * 21.35921 * 7 6 5 32 32 H 1.09000 * 109.47074 * 60.00155 * 1 2 3 33 33 H 1.09002 * 109.47171 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.47433 * 299.99672 * 1 2 3 35 35 H 1.09004 * 109.47090 * 240.00244 * 2 1 3 36 36 H 1.09000 * 109.47074 * 119.99845 * 2 1 3 37 37 H 1.08992 * 111.12952 * 37.53577 * 5 3 2 38 38 H 1.09005 * 111.15534 * 273.38851 * 5 3 2 39 39 H 1.09003 * 110.84638 * 207.67536 * 6 5 3 40 40 H 1.08997 * 111.02515 * 84.13117 * 6 5 3 41 41 H 0.96999 * 120.00192 * 0.02562 * 11 9 7 42 42 H 1.09002 * 113.61096 * 25.51398 * 14 12 11 43 43 H 1.08993 * 113.69063 * 254.62632 * 14 12 11 44 44 H 1.00899 * 111.00063 * 81.04183 * 17 15 14 45 45 H 1.09002 * 109.47091 * 59.99845 * 18 17 15 46 46 H 1.09000 * 109.47343 * 299.99463 * 18 17 15 47 47 H 0.96996 * 120.00564 * 359.97438 * 21 19 18 48 48 H 0.97001 * 119.99781 * 179.97438 * 25 24 22 49 49 H 1.08998 * 113.61564 * 139.97579 * 30 15 14 50 50 H 1.09001 * 113.61372 * 270.88076 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5845 2.0042 0.8155 5 6 3.5841 1.4671 0.1265 6 6 3.9112 2.8397 -0.5222 7 6 2.8316 2.9487 -1.6203 8 1 3.2493 2.6466 -2.5807 9 6 2.3297 4.3671 -1.7049 10 8 1.1775 4.6204 -1.4233 11 7 3.1611 5.3541 -2.0932 12 6 2.6732 6.7331 -2.1749 13 1 1.8089 6.9148 -1.5362 14 6 3.7818 7.7886 -2.0262 15 6 3.0654 8.5827 -3.1311 16 1 2.3092 9.2711 -2.7537 17 7 3.9813 9.2122 -4.0917 18 6 3.3575 10.3816 -4.7252 19 6 4.3250 10.9999 -5.7014 20 8 5.4260 10.5144 -5.8538 21 7 3.9671 12.0928 -6.4041 22 6 4.8472 12.6549 -7.2925 23 1 5.8272 12.2222 -7.4289 24 6 4.4780 13.7814 -8.0174 25 7 3.2853 14.3077 -7.8519 26 14 5.6773 14.5478 -9.2274 27 1 5.0465 15.7295 -9.8683 28 1 6.9048 14.9711 -8.5068 29 1 6.0337 13.5516 -10.2693 30 6 2.4923 7.2403 -3.6154 31 8 1.7568 2.0735 -1.2590 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3634 0.5138 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 4.0373 0.6496 -0.4341 38 1 3.8936 1.4427 1.1714 39 1 4.9098 2.8341 -0.9592 40 1 3.8110 3.6483 0.2019 41 1 4.0825 5.1515 -2.3187 42 1 4.7688 7.4289 -2.3170 43 1 3.7821 8.2899 -1.0584 44 1 4.2911 8.5477 -4.7848 45 1 3.0962 11.1130 -3.9604 46 1 2.4563 10.0709 -5.2538 47 1 3.0868 12.4812 -6.2819 48 1 3.0278 15.0943 -8.3577 49 1 1.4503 7.2984 -3.9301 50 1 3.1268 6.7309 -4.3406 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690339406.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:27 Heat of formation + Delta-G solvation = -132.467881 kcal Electronic energy + Delta-G solvation = -28581.400363 eV Core-core repulsion = 24414.579434 eV Total energy + Delta-G solvation = -4166.820929 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.59988 -40.57330 -39.95312 -38.98429 -36.12492 -35.47438 -34.62508 -33.85618 -33.23323 -32.83105 -29.78086 -28.37114 -26.64367 -26.25034 -25.42071 -23.65657 -22.81257 -22.07486 -21.49677 -21.15619 -20.63277 -19.87964 -18.60886 -17.94847 -17.61668 -17.20805 -17.01776 -16.89944 -16.36226 -16.08328 -15.89880 -15.66711 -15.48990 -14.92004 -14.85212 -14.52254 -14.37204 -14.29517 -14.16826 -13.80291 -13.52622 -13.45144 -13.42698 -13.13844 -13.01643 -12.82586 -12.77672 -12.45215 -12.43265 -12.16657 -12.13701 -12.00293 -11.93626 -11.79496 -11.76025 -11.52991 -11.49456 -11.19685 -10.35511 -10.28878 -10.07320 -10.01382 -9.24489 -8.46138 -5.95206 1.40416 1.42312 1.51989 1.53333 1.98560 2.05722 2.29883 2.84674 2.98135 3.21138 3.41800 3.44942 3.58651 3.68362 3.72868 3.76446 3.91663 3.99130 4.00479 4.13049 4.21563 4.33076 4.34574 4.45691 4.47738 4.52865 4.54745 4.63608 4.77931 4.79916 4.80363 4.86011 4.93122 4.98172 5.00057 5.06351 5.08325 5.10900 5.13534 5.27204 5.40552 5.41001 5.54569 5.92461 5.96362 6.13913 6.41489 6.55358 6.60315 7.12598 7.21949 7.56556 8.11451 8.70921 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.036691 B = 0.001464 C = 0.001448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.937076 B =19123.891474 C =19333.157878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C 0.065 3.935 4 H 0.056 0.944 5 C -0.141 4.141 6 C -0.140 4.140 7 C 0.061 3.939 8 H 0.127 0.873 9 C 0.496 3.504 10 O -0.579 6.579 11 N -0.700 5.700 12 C 0.127 3.873 13 H 0.100 0.900 14 C -0.118 4.118 15 C 0.067 3.933 16 H 0.107 0.893 17 N -0.664 5.664 18 C 0.063 3.937 19 C 0.437 3.563 20 O -0.623 6.623 21 N -0.573 5.573 22 C -0.336 4.336 23 H 0.080 0.920 24 C -0.012 4.012 25 N -0.920 5.920 26 Si 0.993 3.007 27 H -0.271 1.271 28 H -0.271 1.271 29 H -0.271 1.271 30 C -0.176 4.176 31 O -0.378 6.378 32 H 0.037 0.963 33 H 0.066 0.934 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.123 0.877 40 H 0.076 0.924 41 H 0.417 0.583 42 H 0.098 0.902 43 H 0.084 0.916 44 H 0.347 0.653 45 H 0.104 0.896 46 H 0.064 0.936 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.063 0.937 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.240 -26.825 18.009 32.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C 0.008 3.992 4 H 0.074 0.926 5 C -0.179 4.179 6 C -0.177 4.177 7 C 0.000 4.000 8 H 0.144 0.856 9 C 0.283 3.717 10 O -0.458 6.458 11 N -0.353 5.353 12 C 0.022 3.978 13 H 0.118 0.882 14 C -0.157 4.157 15 C -0.044 4.044 16 H 0.125 0.875 17 N -0.295 5.295 18 C -0.069 4.069 19 C 0.225 3.775 20 O -0.509 6.509 21 N -0.211 5.211 22 C -0.466 4.466 23 H 0.098 0.902 24 C -0.212 4.212 25 N -0.561 5.561 26 Si 0.817 3.183 27 H -0.196 1.196 28 H -0.197 1.197 29 H -0.197 1.197 30 C -0.217 4.217 31 O -0.296 6.296 32 H 0.056 0.944 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.122 0.878 39 H 0.141 0.859 40 H 0.094 0.906 41 H 0.254 0.746 42 H 0.116 0.884 43 H 0.103 0.897 44 H 0.167 0.833 45 H 0.122 0.878 46 H 0.082 0.918 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.082 0.918 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.289 -26.458 18.376 32.239 hybrid contribution -0.480 0.593 -1.374 1.572 sum -1.769 -25.865 17.002 31.004 Atomic orbital electron populations 1.21736 0.96213 1.01885 1.01193 1.21666 0.96097 0.93804 1.03771 1.23317 0.96208 0.94283 0.85410 0.92609 1.23332 0.93522 0.97334 1.03675 1.23148 0.99290 0.98770 0.96540 1.22841 0.88390 0.86186 1.02552 0.85575 1.21685 0.85696 0.88696 0.75590 1.90689 1.20162 1.84569 1.50417 1.45837 1.14972 1.06608 1.67911 1.22210 0.98558 0.80297 0.96771 0.88200 1.23371 0.98300 0.94731 0.99288 1.22945 0.94119 0.93219 0.94144 0.87471 1.60047 1.38916 1.09634 1.20939 1.21594 0.94260 0.94728 0.96332 1.20895 0.89297 0.82690 0.84644 1.90480 1.24985 1.65023 1.70457 1.41941 1.16630 1.25705 1.36774 1.19656 0.98168 1.10445 1.18318 0.90206 1.26048 0.98600 0.96712 0.99858 1.69671 1.20140 1.23420 1.42895 0.84983 0.77805 0.77689 0.77830 1.19555 1.19659 1.19666 1.24188 1.01955 0.97766 0.97776 1.88522 1.43348 1.58678 1.39098 0.94367 0.91459 0.93079 0.90882 0.88412 0.88325 0.87835 0.85863 0.90569 0.74563 0.88369 0.89718 0.83332 0.87767 0.91796 0.77009 0.91312 0.91778 0.89129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.85 71.98 0.71 -1.42 16 2 C -0.12 -1.27 5.67 30.59 0.17 -1.09 16 3 C 0.06 0.91 3.40 31.26 0.11 1.01 16 4 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 5 C -0.14 -0.98 6.57 32.05 0.21 -0.76 16 6 C -0.14 -1.08 6.52 31.85 0.21 -0.87 16 7 C 0.06 0.91 3.95 30.32 0.12 1.03 16 8 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 9 C 0.50 10.52 7.03 87.66 0.62 11.13 16 10 O -0.58 -18.52 16.12 15.77 0.25 -18.27 16 11 N -0.70 -10.98 5.33 -440.04 -2.35 -13.33 16 12 C 0.13 2.37 4.24 45.52 0.19 2.56 16 13 H 0.10 2.22 7.46 -2.39 -0.02 2.20 16 14 C -0.12 -2.06 7.63 31.12 0.24 -1.82 16 15 C 0.07 1.44 4.18 45.44 0.19 1.63 16 16 H 0.11 2.19 7.87 -2.39 -0.02 2.17 16 17 N -0.66 -19.70 6.24 -492.87 -3.08 -22.78 16 18 C 0.06 2.12 6.01 85.56 0.51 2.64 16 19 C 0.44 20.64 7.82 87.66 0.69 21.32 16 20 O -0.62 -34.09 15.78 -3.05 -0.05 -34.14 16 21 N -0.57 -29.42 5.29 -306.98 -1.62 -31.05 16 22 C -0.34 -19.11 9.68 84.04 0.81 -18.30 16 23 H 0.08 4.81 7.16 -2.92 -0.02 4.79 16 24 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 25 N -0.92 -49.77 13.05 21.66 0.28 -49.48 16 26 Si 0.99 42.81 29.55 68.60 2.03 44.84 16 27 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 28 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 29 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 30 C -0.18 -3.57 7.50 31.12 0.23 -3.34 16 31 O -0.38 -7.85 10.02 -130.19 -1.30 -9.16 16 32 H 0.04 0.71 7.99 -2.39 -0.02 0.69 16 33 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.10 0.43 8.06 -2.39 -0.02 0.41 16 38 H 0.10 0.40 8.14 -2.38 -0.02 0.38 16 39 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 40 H 0.08 0.72 7.84 -2.39 -0.02 0.70 16 41 H 0.42 3.88 8.73 -92.71 -0.81 3.07 16 42 H 0.10 1.63 8.12 -2.39 -0.02 1.61 16 43 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.35 10.76 7.90 -89.69 -0.71 10.05 16 45 H 0.10 3.16 8.13 -2.39 -0.02 3.15 16 46 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 47 H 0.40 19.35 7.90 -92.71 -0.73 18.61 16 48 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 49 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 50 H 0.09 1.80 7.82 -2.39 -0.02 1.78 16 Total: -1.00 -77.43 411.08 -1.64 -79.07 By element: Atomic # 1 Polarization: 42.03 SS G_CDS: -1.28 Total: 40.75 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: 5.48 Total: 13.54 kcal Atomic # 7 Polarization: -109.87 SS G_CDS: -6.76 Total: -116.63 kcal Atomic # 8 Polarization: -60.47 SS G_CDS: -1.10 Total: -61.56 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -77.43 -1.64 -79.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690339406.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.399 kcal (2) G-P(sol) polarization free energy of solvation -77.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds