Wall clock time and date at job start Tue Mar 31 2020 23:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47076 * 2 1 4 4 H 1.08998 * 110.41798 * 52.69753 * 3 2 1 5 5 C 1.54482 * 110.37337 * 174.99862 * 3 2 1 6 6 C 1.54504 * 104.06618 * 142.81131 * 5 3 2 7 7 C 1.54485 * 104.05827 * 0.02562 * 6 5 3 8 8 H 1.08998 * 110.37154 * 94.96894 * 7 6 5 9 9 C 1.50701 * 110.36996 * 217.18801 * 7 6 5 10 10 O 1.21281 * 120.00305 * 113.45363 * 9 7 6 11 11 N 1.34777 * 119.99965 * 293.45066 * 9 7 6 12 12 C 1.46501 * 120.00060 * 180.02562 * 11 9 7 13 13 H 1.09003 * 112.85121 * 336.19953 * 12 11 9 14 14 C 1.53785 * 113.69292 * 107.46384 * 12 11 9 15 15 C 1.53780 * 87.07993 * 139.99275 * 14 12 11 16 16 H 1.09001 * 113.69326 * 89.12805 * 15 14 12 17 17 N 1.46898 * 113.61701 * 220.01900 * 15 14 12 18 18 C 1.46904 * 111.00201 * 252.50091 * 17 15 14 19 19 C 1.50697 * 109.46892 * 179.97438 * 18 17 15 20 20 O 1.21291 * 120.00763 * 359.72740 * 19 18 17 21 21 N 1.34784 * 119.99774 * 179.97438 * 19 18 17 22 22 C 1.37092 * 119.99968 * 179.72830 * 21 19 18 23 23 H 1.08005 * 120.00127 * 359.97438 * 22 21 19 24 24 C 1.38955 * 120.00107 * 179.97438 * 22 21 19 25 25 N 1.31413 * 119.99828 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 120.00407 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.46940 * 60.00199 * 26 24 22 28 28 H 1.48496 * 109.47341 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.47121 * 300.00728 * 26 24 22 30 30 C 1.53783 * 113.61495 * 205.00245 * 12 11 9 31 31 O 1.44419 * 104.90391 * 336.07392 * 7 6 5 32 32 H 1.08998 * 109.47196 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47113 * 299.99783 * 1 2 3 34 34 H 1.09005 * 109.46807 * 59.99885 * 1 2 3 35 35 H 1.09004 * 109.46635 * 240.00526 * 2 1 3 36 36 H 1.08997 * 109.47388 * 120.00230 * 2 1 3 37 37 H 1.08999 * 110.50708 * 24.16976 * 5 3 2 38 38 H 1.09000 * 110.51187 * 261.46207 * 5 3 2 39 39 H 1.08999 * 110.51562 * 241.36611 * 6 5 3 40 40 H 1.08996 * 110.62629 * 118.70008 * 6 5 3 41 41 H 0.96999 * 120.00195 * 0.02562 * 11 9 7 42 42 H 1.08999 * 113.60985 * 25.44673 * 14 12 11 43 43 H 1.08993 * 113.61421 * 254.54369 * 14 12 11 44 44 H 1.00907 * 110.99840 * 16.45169 * 17 15 14 45 45 H 1.09001 * 109.46900 * 60.00109 * 18 17 15 46 46 H 1.08993 * 109.47169 * 299.99830 * 18 17 15 47 47 H 0.97005 * 119.99846 * 359.72750 * 21 19 18 48 48 H 0.96990 * 120.00373 * 180.02562 * 25 24 22 49 49 H 1.08994 * 113.61433 * 105.38533 * 30 12 11 50 50 H 1.08991 * 113.61235 * 334.47919 * 30 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5831 2.0073 0.8125 5 6 3.5794 1.4687 0.1263 6 6 4.0108 2.6420 -0.7817 7 6 2.6808 3.1863 -1.3487 8 1 2.3236 4.0200 -0.7441 9 6 2.8588 3.6174 -2.7817 10 8 2.2917 3.0177 -3.6703 11 7 3.6481 4.6695 -3.0758 12 6 3.8207 5.0889 -4.4689 13 1 3.6298 4.2849 -5.1798 14 6 3.0962 6.4008 -4.8135 15 6 4.3331 6.7729 -5.6480 16 1 4.2835 6.4301 -6.6815 17 7 4.7167 8.1863 -5.5337 18 6 4.3969 8.9199 -6.7657 19 6 4.8031 10.3628 -6.6108 20 8 5.3047 10.7439 -5.5743 21 7 4.6045 11.2311 -7.6224 22 6 4.9689 12.5450 -7.4796 23 1 5.4148 12.8844 -6.5563 24 6 4.7646 13.4400 -8.5226 25 7 4.2216 13.0271 -9.6459 26 14 5.2604 15.2304 -8.3278 27 1 6.7194 15.3140 -8.0640 28 1 4.9390 15.9715 -9.5738 29 1 4.5167 15.8290 -7.1904 30 6 5.1375 5.8400 -4.7275 31 8 1.7607 2.0761 -1.2682 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5139 -0.8900 35 1 1.8933 -0.5138 -0.8901 36 1 1.8934 -0.5138 0.8899 37 1 4.0078 0.5321 -0.2307 38 1 3.8749 1.6560 1.1586 39 1 4.6523 2.2855 -1.5876 40 1 4.5205 3.4101 -0.2003 41 1 4.1020 5.1490 -2.3652 42 1 2.9381 7.0512 -3.9533 43 1 2.1945 6.2582 -5.4090 44 1 4.2786 8.6163 -4.7328 45 1 3.3249 8.8629 -6.9546 46 1 4.9373 8.4778 -7.6025 47 1 4.2037 10.9263 -8.4515 48 1 4.0793 13.6517 -10.3741 49 1 5.8837 5.2446 -5.2535 50 1 5.5374 6.3370 -3.8438 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690339407.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:32 Heat of formation + Delta-G solvation = -105.491523 kcal Electronic energy + Delta-G solvation = -28520.705193 eV Core-core repulsion = 24355.054046 eV Total energy + Delta-G solvation = -4165.651147 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.81392 -39.71504 -38.47361 -37.87425 -34.66278 -34.08206 -33.87054 -32.88982 -32.17714 -31.19219 -29.14412 -26.84217 -25.80331 -25.15927 -24.18130 -22.77861 -22.20649 -21.47400 -20.73684 -20.08879 -19.14820 -17.88868 -17.56383 -17.06274 -16.90607 -16.23608 -15.96448 -15.45294 -15.18418 -14.88912 -14.67229 -14.47182 -14.19346 -14.08549 -14.03152 -13.78942 -13.53424 -13.34915 -13.22620 -12.88385 -12.59246 -12.35835 -12.24218 -12.12059 -11.91027 -11.65206 -11.55825 -11.43243 -11.27812 -11.23341 -11.10470 -11.05024 -10.98848 -10.84412 -10.44467 -10.36439 -10.21380 -9.83902 -9.50367 -9.26112 -8.45669 -8.03373 -7.95570 -6.41737 -3.82728 2.29865 2.57897 3.19923 3.25756 3.30018 3.55369 3.90658 3.97041 4.08174 4.13886 4.29202 4.34064 4.38233 4.49282 4.53435 4.61389 4.68557 4.75531 4.80909 4.84678 4.87469 5.03356 5.16218 5.18070 5.24527 5.27277 5.35609 5.42756 5.43026 5.53253 5.55164 5.60635 5.64876 5.71065 5.78015 5.81766 5.89930 5.92345 5.94897 6.01432 6.25074 6.30079 6.40376 7.19777 7.25276 7.54742 7.64117 7.94724 8.05818 8.61008 9.17477 9.54095 10.05460 10.75880 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.034853 B = 0.001455 C = 0.001445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.183880 B =19245.407172 C =19369.363472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C 0.070 3.930 4 H 0.072 0.928 5 C -0.150 4.150 6 C -0.145 4.145 7 C 0.057 3.943 8 H 0.094 0.906 9 C 0.519 3.481 10 O -0.520 6.520 11 N -0.714 5.714 12 C 0.123 3.877 13 H 0.115 0.885 14 C -0.181 4.181 15 C 0.071 3.929 16 H 0.100 0.900 17 N -0.654 5.654 18 C 0.049 3.951 19 C 0.440 3.560 20 O -0.585 6.585 21 N -0.563 5.563 22 C -0.301 4.301 23 H 0.102 0.898 24 C 0.023 3.977 25 N -0.901 5.901 26 Si 0.931 3.069 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.274 1.274 30 C -0.132 4.132 31 O -0.338 6.338 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.402 0.598 42 H 0.087 0.913 43 H 0.071 0.929 44 H 0.351 0.649 45 H 0.045 0.955 46 H 0.086 0.914 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.076 0.924 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.302 -24.968 18.247 31.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C 0.012 3.988 4 H 0.090 0.910 5 C -0.187 4.187 6 C -0.183 4.183 7 C -0.005 4.005 8 H 0.112 0.888 9 C 0.303 3.697 10 O -0.394 6.394 11 N -0.367 5.367 12 C 0.018 3.982 13 H 0.133 0.867 14 C -0.222 4.222 15 C -0.041 4.041 16 H 0.118 0.882 17 N -0.286 5.286 18 C -0.083 4.083 19 C 0.225 3.775 20 O -0.470 6.470 21 N -0.199 5.199 22 C -0.431 4.431 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.758 3.242 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 C -0.171 4.171 31 O -0.257 6.257 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.106 0.894 41 H 0.236 0.764 42 H 0.106 0.894 43 H 0.090 0.910 44 H 0.172 0.828 45 H 0.063 0.937 46 H 0.105 0.895 47 H 0.226 0.774 48 H 0.082 0.918 49 H 0.094 0.906 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.942 -25.204 17.763 30.975 hybrid contribution -0.651 1.179 0.040 1.347 sum -3.593 -24.025 17.803 30.118 Atomic orbital electron populations 1.21746 0.95094 1.01740 1.02407 1.21581 0.96961 0.94053 1.02829 1.23174 0.94126 0.94800 0.86705 0.91016 1.22999 0.95890 0.99301 1.00540 1.22909 0.96564 0.98741 1.00072 1.22842 0.91072 0.92289 0.94288 0.88814 1.20233 0.79019 0.80130 0.90277 1.90734 1.46209 1.54011 1.48473 1.45892 1.49260 1.32221 1.09313 1.22437 0.97254 0.95801 0.82739 0.86716 1.24246 0.99287 0.97635 1.01041 1.22811 0.93237 0.89453 0.98565 0.88197 1.60018 1.63275 1.00128 1.05134 1.21724 0.98902 0.94207 0.93498 1.19829 0.85333 0.86759 0.85546 1.90515 1.48546 1.78910 1.28993 1.41863 1.54651 1.08681 1.14752 1.19658 1.37967 0.83749 1.01695 0.87981 1.25262 0.97131 1.00544 0.94940 1.69601 1.43650 1.36468 1.04547 0.85914 0.79179 0.81653 0.77444 1.19879 1.20970 1.19938 1.23471 0.95906 0.96919 1.00812 1.89311 1.56365 1.42568 1.37423 0.92637 0.92849 0.91821 0.90874 0.90581 0.90159 0.90031 0.90030 0.89423 0.76387 0.89404 0.90993 0.82829 0.93717 0.89537 0.77435 0.91807 0.90565 0.88971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.85 37.16 0.37 -0.62 16 2 C -0.12 -0.71 5.56 -26.73 -0.15 -0.86 16 3 C 0.07 0.47 3.24 -25.95 -0.08 0.39 16 4 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 5 C -0.15 -0.76 6.63 -25.16 -0.17 -0.92 16 6 C -0.14 -0.80 6.62 -25.16 -0.17 -0.97 16 7 C 0.06 0.46 3.71 -27.10 -0.10 0.36 16 8 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 9 C 0.52 5.64 7.07 -10.99 -0.08 5.56 16 10 O -0.52 -8.11 16.15 -13.65 -0.22 -8.33 16 11 N -0.71 -6.05 5.36 -53.01 -0.28 -6.34 16 12 C 0.12 1.19 4.24 -67.11 -0.28 0.91 16 13 H 0.11 1.27 7.46 -51.93 -0.39 0.88 16 14 C -0.18 -1.91 7.50 -25.92 -0.19 -2.10 16 15 C 0.07 0.82 4.18 -66.90 -0.28 0.54 16 16 H 0.10 1.10 7.87 -51.93 -0.41 0.69 16 17 N -0.65 -10.06 6.25 -107.13 -0.67 -10.73 16 18 C 0.05 0.85 6.01 -4.98 -0.03 0.82 16 19 C 0.44 10.32 7.82 -10.98 -0.09 10.23 16 20 O -0.59 -15.76 15.77 5.55 0.09 -15.67 16 21 N -0.56 -14.25 5.29 -10.96 -0.06 -14.31 16 22 C -0.30 -8.40 9.68 -14.93 -0.14 -8.55 16 23 H 0.10 2.98 7.16 -52.48 -0.38 2.60 16 24 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 25 N -0.90 -24.51 13.05 55.50 0.72 -23.79 16 26 Si 0.93 21.02 29.55 -169.99 -5.02 15.99 16 27 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 28 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 29 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 30 C -0.13 -1.27 7.63 -25.92 -0.20 -1.47 16 31 O -0.34 -3.56 10.40 -54.44 -0.57 -4.13 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.53 8.01 -51.93 -0.42 0.12 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.08 0.41 7.87 -51.93 -0.41 0.00 16 38 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 39 H 0.08 0.52 7.87 -51.93 -0.41 0.11 16 40 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.40 2.32 8.73 -40.82 -0.36 1.96 16 42 H 0.09 0.91 7.82 -51.93 -0.41 0.51 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.35 5.57 7.89 -39.29 -0.31 5.26 16 45 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.09 1.38 8.13 -51.93 -0.42 0.96 16 47 H 0.39 9.50 7.90 -40.82 -0.32 9.17 16 48 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 49 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 50 H 0.09 0.87 8.12 -51.93 -0.42 0.45 16 LS Contribution 411.07 15.07 6.19 6.19 Total: -1.00 -34.73 411.07 -9.93 -44.67 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: -8.43 Total: 12.60 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -1.69 Total: 3.84 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: -0.29 Total: -55.17 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: -0.70 Total: -28.13 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.73 -9.93 -44.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690339407.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.823 kcal (2) G-P(sol) polarization free energy of solvation -34.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds