Wall clock time and date at job start Tue Mar 31 2020 23:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47076 * 2 1 4 4 H 1.08998 * 110.41798 * 52.69753 * 3 2 1 5 5 C 1.54482 * 110.37337 * 174.99862 * 3 2 1 6 6 C 1.54504 * 104.06618 * 142.81131 * 5 3 2 7 7 C 1.54485 * 104.05827 * 0.02562 * 6 5 3 8 8 H 1.08998 * 110.37154 * 94.96894 * 7 6 5 9 9 C 1.50701 * 110.36996 * 217.18801 * 7 6 5 10 10 O 1.21281 * 120.00305 * 113.45363 * 9 7 6 11 11 N 1.34777 * 119.99965 * 293.45066 * 9 7 6 12 12 C 1.46501 * 120.00060 * 180.02562 * 11 9 7 13 13 H 1.09003 * 112.85121 * 336.19953 * 12 11 9 14 14 C 1.53785 * 113.69292 * 107.46384 * 12 11 9 15 15 C 1.53780 * 87.07993 * 139.99275 * 14 12 11 16 16 H 1.09001 * 113.69326 * 89.12805 * 15 14 12 17 17 N 1.46898 * 113.61701 * 220.01900 * 15 14 12 18 18 C 1.46904 * 111.00201 * 252.50091 * 17 15 14 19 19 C 1.50697 * 109.46892 * 179.97438 * 18 17 15 20 20 O 1.21291 * 120.00763 * 359.72740 * 19 18 17 21 21 N 1.34784 * 119.99774 * 179.97438 * 19 18 17 22 22 C 1.37092 * 119.99968 * 179.72830 * 21 19 18 23 23 H 1.08005 * 120.00127 * 359.97438 * 22 21 19 24 24 C 1.38955 * 120.00107 * 179.97438 * 22 21 19 25 25 N 1.31413 * 119.99828 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 120.00407 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.46940 * 60.00199 * 26 24 22 28 28 H 1.48496 * 109.47341 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.47121 * 300.00728 * 26 24 22 30 30 C 1.53783 * 113.61495 * 205.00245 * 12 11 9 31 31 O 1.44419 * 104.90391 * 336.07392 * 7 6 5 32 32 H 1.08998 * 109.47196 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47113 * 299.99783 * 1 2 3 34 34 H 1.09005 * 109.46807 * 59.99885 * 1 2 3 35 35 H 1.09004 * 109.46635 * 240.00526 * 2 1 3 36 36 H 1.08997 * 109.47388 * 120.00230 * 2 1 3 37 37 H 1.08999 * 110.50708 * 24.16976 * 5 3 2 38 38 H 1.09000 * 110.51187 * 261.46207 * 5 3 2 39 39 H 1.08999 * 110.51562 * 241.36611 * 6 5 3 40 40 H 1.08996 * 110.62629 * 118.70008 * 6 5 3 41 41 H 0.96999 * 120.00195 * 0.02562 * 11 9 7 42 42 H 1.08999 * 113.60985 * 25.44673 * 14 12 11 43 43 H 1.08993 * 113.61421 * 254.54369 * 14 12 11 44 44 H 1.00907 * 110.99840 * 16.45169 * 17 15 14 45 45 H 1.09001 * 109.46900 * 60.00109 * 18 17 15 46 46 H 1.08993 * 109.47169 * 299.99830 * 18 17 15 47 47 H 0.97005 * 119.99846 * 359.72750 * 21 19 18 48 48 H 0.96990 * 120.00373 * 180.02562 * 25 24 22 49 49 H 1.08994 * 113.61433 * 105.38533 * 30 12 11 50 50 H 1.08991 * 113.61235 * 334.47919 * 30 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5831 2.0073 0.8125 5 6 3.5794 1.4687 0.1263 6 6 4.0108 2.6420 -0.7817 7 6 2.6808 3.1863 -1.3487 8 1 2.3236 4.0200 -0.7441 9 6 2.8588 3.6174 -2.7817 10 8 2.2917 3.0177 -3.6703 11 7 3.6481 4.6695 -3.0758 12 6 3.8207 5.0889 -4.4689 13 1 3.6298 4.2849 -5.1798 14 6 3.0962 6.4008 -4.8135 15 6 4.3331 6.7729 -5.6480 16 1 4.2835 6.4301 -6.6815 17 7 4.7167 8.1863 -5.5337 18 6 4.3969 8.9199 -6.7657 19 6 4.8031 10.3628 -6.6108 20 8 5.3047 10.7439 -5.5743 21 7 4.6045 11.2311 -7.6224 22 6 4.9689 12.5450 -7.4796 23 1 5.4148 12.8844 -6.5563 24 6 4.7646 13.4400 -8.5226 25 7 4.2216 13.0271 -9.6459 26 14 5.2604 15.2304 -8.3278 27 1 6.7194 15.3140 -8.0640 28 1 4.9390 15.9715 -9.5738 29 1 4.5167 15.8290 -7.1904 30 6 5.1375 5.8400 -4.7275 31 8 1.7607 2.0761 -1.2682 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5139 -0.8900 35 1 1.8933 -0.5138 -0.8901 36 1 1.8934 -0.5138 0.8899 37 1 4.0078 0.5321 -0.2307 38 1 3.8749 1.6560 1.1586 39 1 4.6523 2.2855 -1.5876 40 1 4.5205 3.4101 -0.2003 41 1 4.1020 5.1490 -2.3652 42 1 2.9381 7.0512 -3.9533 43 1 2.1945 6.2582 -5.4090 44 1 4.2786 8.6163 -4.7328 45 1 3.3249 8.8629 -6.9546 46 1 4.9373 8.4778 -7.6025 47 1 4.2037 10.9263 -8.4515 48 1 4.0793 13.6517 -10.3741 49 1 5.8837 5.2446 -5.2535 50 1 5.5374 6.3370 -3.8438 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690339407.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:31 Heat of formation + Delta-G solvation = -131.511270 kcal Electronic energy + Delta-G solvation = -28521.833494 eV Core-core repulsion = 24355.054046 eV Total energy + Delta-G solvation = -4166.779448 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.55810 -40.55771 -39.96191 -39.04359 -36.12498 -35.48066 -34.61201 -33.84315 -33.22741 -32.82539 -29.75531 -28.36545 -26.64141 -26.26211 -25.48297 -23.65439 -22.76500 -21.97673 -21.56546 -21.24326 -20.68469 -19.87911 -18.29131 -17.94840 -17.56490 -17.44093 -16.91269 -16.81313 -16.36027 -16.11389 -15.92431 -15.71814 -15.50137 -14.92426 -14.69535 -14.62642 -14.52522 -14.33034 -14.24156 -14.01211 -13.52582 -13.44904 -13.42213 -13.13464 -12.92581 -12.82104 -12.69573 -12.43115 -12.40161 -12.16346 -12.13555 -11.94101 -11.90126 -11.79417 -11.70795 -11.53208 -11.49263 -10.99548 -10.62387 -10.32656 -10.09404 -10.01154 -9.24134 -8.45934 -5.94948 1.40526 1.42439 1.48577 1.53429 1.87710 2.05983 2.29977 2.92412 3.04637 3.21360 3.43688 3.46467 3.57285 3.65920 3.72731 3.89716 3.91042 3.93367 4.00685 4.14293 4.18476 4.33238 4.33779 4.37165 4.48158 4.54342 4.57584 4.63975 4.74841 4.78516 4.80550 4.88460 4.92402 4.99042 5.01350 5.06763 5.08224 5.10324 5.14469 5.20652 5.40396 5.41157 5.52531 5.83452 5.92975 6.14228 6.41941 6.51689 6.60550 7.12857 7.18269 7.56830 8.11748 8.71157 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.034853 B = 0.001455 C = 0.001445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.183880 B =19245.407172 C =19369.363472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C 0.062 3.938 4 H 0.085 0.915 5 C -0.145 4.145 6 C -0.139 4.139 7 C 0.054 3.946 8 H 0.117 0.883 9 C 0.515 3.485 10 O -0.576 6.576 11 N -0.699 5.699 12 C 0.128 3.872 13 H 0.101 0.899 14 C -0.176 4.176 15 C 0.067 3.933 16 H 0.108 0.892 17 N -0.664 5.664 18 C 0.063 3.937 19 C 0.437 3.563 20 O -0.623 6.623 21 N -0.573 5.573 22 C -0.336 4.336 23 H 0.080 0.920 24 C -0.012 4.012 25 N -0.921 5.921 26 Si 0.993 3.007 27 H -0.272 1.272 28 H -0.271 1.271 29 H -0.271 1.271 30 C -0.118 4.118 31 O -0.378 6.378 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.036 0.964 35 H 0.056 0.944 36 H 0.100 0.900 37 H 0.077 0.923 38 H 0.107 0.893 39 H 0.069 0.931 40 H 0.118 0.882 41 H 0.418 0.582 42 H 0.091 0.909 43 H 0.065 0.935 44 H 0.347 0.653 45 H 0.064 0.936 46 H 0.104 0.896 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.085 0.915 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.584 -25.191 19.748 32.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C 0.005 3.995 4 H 0.103 0.897 5 C -0.183 4.183 6 C -0.177 4.177 7 C -0.007 4.007 8 H 0.135 0.865 9 C 0.301 3.699 10 O -0.455 6.455 11 N -0.351 5.351 12 C 0.022 3.978 13 H 0.119 0.881 14 C -0.217 4.217 15 C -0.044 4.044 16 H 0.126 0.874 17 N -0.295 5.295 18 C -0.069 4.069 19 C 0.225 3.775 20 O -0.510 6.510 21 N -0.211 5.211 22 C -0.466 4.466 23 H 0.098 0.902 24 C -0.212 4.212 25 N -0.561 5.561 26 Si 0.817 3.183 27 H -0.197 1.197 28 H -0.196 1.196 29 H -0.197 1.197 30 C -0.157 4.157 31 O -0.297 6.297 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.055 0.945 35 H 0.075 0.925 36 H 0.119 0.881 37 H 0.095 0.905 38 H 0.125 0.875 39 H 0.088 0.912 40 H 0.136 0.864 41 H 0.255 0.745 42 H 0.109 0.891 43 H 0.083 0.917 44 H 0.167 0.833 45 H 0.082 0.918 46 H 0.122 0.878 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.103 0.897 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.207 -25.434 19.278 31.991 hybrid contribution -0.897 1.192 -0.400 1.544 sum -3.105 -24.243 18.878 30.883 Atomic orbital electron populations 1.21735 0.95634 1.01985 1.01555 1.21623 0.96516 0.94128 1.03180 1.23408 0.95595 0.94823 0.85686 0.89732 1.23015 0.94388 0.98988 1.01869 1.22944 0.95021 0.99698 1.00051 1.23020 0.92419 0.92716 0.92505 0.86510 1.20845 0.78143 0.79731 0.91140 1.90705 1.48591 1.55927 1.50269 1.45758 1.48477 1.31542 1.09352 1.22241 0.97256 0.95055 0.83233 0.88062 1.24190 0.98656 0.97933 1.00877 1.22945 0.94386 0.87429 0.99667 0.87420 1.60054 1.63839 1.01612 1.04040 1.21593 1.00120 0.90090 0.95111 1.20901 0.83517 0.88863 0.84245 1.90481 1.49884 1.80257 1.30339 1.41944 1.55245 1.08395 1.15472 1.19655 1.39790 0.85523 1.01606 0.90211 1.26044 0.96559 1.04282 0.94334 1.69666 1.43677 1.37853 1.04936 0.84984 0.78752 0.76737 0.77841 1.19670 1.19563 1.19664 1.23379 0.95697 0.96076 1.00559 1.89288 1.57432 1.43594 1.39403 0.91883 0.91812 0.94469 0.92496 0.88135 0.90455 0.87452 0.91170 0.86384 0.74480 0.89069 0.91662 0.83320 0.91768 0.87755 0.77008 0.91314 0.89685 0.88335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.85 71.98 0.71 -1.23 16 2 C -0.12 -1.34 5.56 30.59 0.17 -1.17 16 3 C 0.06 0.75 3.24 31.10 0.10 0.86 16 4 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 5 C -0.15 -1.12 6.63 31.61 0.21 -0.91 16 6 C -0.14 -1.23 6.62 31.61 0.21 -1.02 16 7 C 0.05 0.82 3.71 30.35 0.11 0.94 16 8 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 9 C 0.51 11.02 7.07 87.66 0.62 11.64 16 10 O -0.58 -18.61 16.15 15.34 0.25 -18.36 16 11 N -0.70 -10.93 5.36 -440.02 -2.36 -13.28 16 12 C 0.13 2.35 4.24 45.52 0.19 2.54 16 13 H 0.10 2.22 7.46 -2.39 -0.02 2.20 16 14 C -0.18 -3.50 7.50 31.12 0.23 -3.27 16 15 C 0.07 1.43 4.18 45.44 0.19 1.62 16 16 H 0.11 2.17 7.87 -2.39 -0.02 2.15 16 17 N -0.66 -19.56 6.25 -492.86 -3.08 -22.64 16 18 C 0.06 2.11 6.01 85.56 0.51 2.63 16 19 C 0.44 20.58 7.82 87.65 0.69 21.26 16 20 O -0.62 -34.01 15.77 -3.06 -0.05 -34.06 16 21 N -0.57 -29.36 5.29 -306.97 -1.62 -30.99 16 22 C -0.34 -19.07 9.68 84.04 0.81 -18.26 16 23 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 24 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 25 N -0.92 -49.71 13.05 21.66 0.28 -49.43 16 26 Si 0.99 42.77 29.55 68.60 2.03 44.79 16 27 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 28 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 29 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 30 C -0.12 -2.04 7.63 31.12 0.24 -1.80 16 31 O -0.38 -7.94 10.40 -130.61 -1.36 -9.30 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.04 0.66 8.01 -2.38 -0.02 0.64 16 35 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 36 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.08 0.65 7.87 -2.39 -0.02 0.63 16 38 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 39 H 0.07 0.79 7.87 -2.39 -0.02 0.77 16 40 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 41 H 0.42 3.86 8.73 -92.71 -0.81 3.05 16 42 H 0.09 1.77 7.82 -2.39 -0.02 1.75 16 43 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.35 10.68 7.89 -89.69 -0.71 9.97 16 45 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.10 3.15 8.13 -2.39 -0.02 3.13 16 47 H 0.40 19.30 7.90 -92.70 -0.73 18.57 16 48 H 0.28 14.07 8.31 -92.72 -0.77 13.30 16 49 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 50 H 0.10 1.62 8.12 -2.39 -0.02 1.60 16 Total: -1.00 -77.45 411.07 -1.73 -79.18 By element: Atomic # 1 Polarization: 41.74 SS G_CDS: -1.28 Total: 40.45 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: 5.47 Total: 13.62 kcal Atomic # 7 Polarization: -109.56 SS G_CDS: -6.77 Total: -116.34 kcal Atomic # 8 Polarization: -60.56 SS G_CDS: -1.16 Total: -61.72 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.79 kcal Total: -77.45 -1.73 -79.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690339407.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.332 kcal (2) G-P(sol) polarization free energy of solvation -77.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds