Wall clock time and date at job start Tue Mar 31 2020 23:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 110.27543 * 305.70225 * 3 2 1 5 5 C 1.54941 * 110.30657 * 183.60918 * 3 2 1 6 6 C 1.55307 * 100.94052 * 204.53993 * 5 3 2 7 7 C 1.54378 * 102.25419 * 34.13841 * 6 5 3 8 8 H 1.09004 * 109.83363 * 98.15313 * 7 6 5 9 9 C 1.50693 * 109.83128 * 219.12813 * 7 6 5 10 10 O 1.21286 * 120.00032 * 114.99443 * 9 7 6 11 11 N 1.34781 * 120.00015 * 294.99550 * 9 7 6 12 12 C 1.46503 * 119.99645 * 179.97438 * 11 9 7 13 13 H 1.08996 * 112.85457 * 336.19623 * 12 11 9 14 14 C 1.53788 * 113.61038 * 107.50940 * 12 11 9 15 15 C 1.53777 * 87.07966 * 139.97663 * 14 12 11 16 16 H 1.09000 * 113.61780 * 89.11709 * 15 14 12 17 17 N 1.46903 * 113.68829 * 220.00417 * 15 14 12 18 18 C 1.46894 * 110.99871 * 252.53399 * 17 15 14 19 19 C 1.50707 * 109.47202 * 179.97438 * 18 17 15 20 20 O 1.21297 * 119.99649 * 0.02562 * 19 18 17 21 21 N 1.34771 * 120.00216 * 180.02562 * 19 18 17 22 22 C 1.37104 * 120.00167 * 180.02562 * 21 19 18 23 23 H 1.07996 * 119.99379 * 359.97438 * 22 21 19 24 24 C 1.38947 * 120.00186 * 179.97438 * 22 21 19 25 25 N 1.31413 * 119.99887 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00134 * 179.97438 * 24 22 21 27 27 H 1.48508 * 109.46714 * 0.02562 * 26 24 22 28 28 H 1.48497 * 109.47253 * 119.99636 * 26 24 22 29 29 H 1.48498 * 109.47228 * 240.00384 * 26 24 22 30 30 C 1.53781 * 87.08433 * 334.56445 * 15 14 12 31 31 O 1.43470 * 107.62013 * 338.65071 * 7 6 5 32 32 H 1.09002 * 109.47164 * 299.99647 * 1 2 3 33 33 H 1.08993 * 109.47258 * 60.00139 * 1 2 3 34 34 H 1.09000 * 109.47021 * 179.97438 * 1 2 3 35 35 H 1.08993 * 109.46902 * 240.00322 * 2 1 3 36 36 H 1.08993 * 109.46975 * 120.00331 * 2 1 3 37 37 H 1.08998 * 111.13020 * 322.46410 * 5 3 2 38 38 H 1.09004 * 111.12493 * 86.62977 * 5 3 2 39 39 H 1.09009 * 110.84545 * 152.32627 * 6 5 3 40 40 H 1.08997 * 110.85391 * 275.73739 * 6 5 3 41 41 H 0.96990 * 119.99774 * 0.02562 * 11 9 7 42 42 H 1.08994 * 113.60843 * 254.52428 * 14 12 11 43 43 H 1.08996 * 113.61516 * 25.42362 * 14 12 11 44 44 H 1.00894 * 111.00164 * 16.49253 * 17 15 14 45 45 H 1.08994 * 109.47871 * 300.00111 * 18 17 15 46 46 H 1.09002 * 109.47597 * 60.00414 * 18 17 15 47 47 H 0.97001 * 120.00283 * 359.97438 * 21 19 18 48 48 H 0.96995 * 119.99726 * 180.02562 * 25 24 22 49 49 H 1.09004 * 113.61711 * 270.88694 * 30 15 14 50 50 H 1.09000 * 113.69001 * 139.99318 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6033 1.9975 -0.8303 5 6 3.5865 1.4661 -0.0915 6 6 3.8989 2.8440 0.5535 7 6 2.7946 2.9618 1.6258 8 1 3.1898 2.6659 2.5977 9 6 2.2910 4.3807 1.6873 10 8 1.1456 4.6317 1.3774 11 7 3.1135 5.3710 2.0867 12 6 2.6239 6.7506 2.1460 13 1 1.7745 6.9270 1.4862 14 6 2.4117 7.2678 3.5786 15 6 2.9955 8.6067 3.0976 16 1 2.2469 9.2915 2.6990 17 7 3.8905 9.2445 4.0723 18 6 3.2526 10.4181 4.6834 19 6 4.1983 11.0442 5.6759 20 8 5.2960 10.5605 5.8558 21 7 3.8244 12.1414 6.3633 22 6 4.6850 12.7113 7.2657 23 1 5.6623 12.2806 7.4259 24 6 4.2998 13.8429 7.9741 25 7 3.1107 14.3672 7.7787 26 14 5.4720 14.6189 9.2042 27 1 6.7384 13.8440 9.2377 28 1 5.7592 16.0184 8.7993 29 1 4.8506 14.6113 10.5529 30 6 3.7358 7.8048 2.0141 31 8 1.7261 2.0823 1.2473 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 -0.3633 -1.0277 -0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5139 0.8899 37 1 4.0267 0.6532 0.4859 38 1 3.9192 1.4337 -1.1290 39 1 4.8874 2.8419 1.0131 40 1 3.8168 3.6442 -0.1820 41 1 4.0295 5.1703 2.3342 42 1 1.3632 7.3282 3.8701 43 1 3.0301 6.7634 4.3210 44 1 4.1862 8.5857 4.7769 45 1 3.0069 11.1434 3.9078 46 1 2.3407 10.1107 5.1954 47 1 2.9468 12.5285 6.2191 48 1 2.8419 15.1573 8.2730 49 1 4.7162 7.4472 2.3289 50 1 3.7570 8.2977 1.0422 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690339408.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:36 Heat of formation + Delta-G solvation = -106.688927 kcal Electronic energy + Delta-G solvation = -28581.990706 eV Core-core repulsion = 24416.287636 eV Total energy + Delta-G solvation = -4165.703070 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.85583 -39.69839 -38.42667 -37.85089 -34.65353 -34.07533 -33.86722 -32.92209 -32.17565 -31.19219 -29.15730 -26.83908 -25.79621 -25.08660 -24.16569 -22.77690 -22.31386 -21.45389 -20.63915 -20.02208 -19.14502 -17.95910 -17.86461 -17.10073 -16.57096 -16.45223 -15.95108 -15.45896 -14.99358 -14.94469 -14.54394 -14.47042 -14.43054 -14.05408 -13.81910 -13.67418 -13.39875 -13.32597 -13.24043 -12.87831 -12.59259 -12.43132 -12.28530 -12.11978 -11.95106 -11.65715 -11.56718 -11.54317 -11.29495 -11.25786 -11.09554 -11.07794 -10.98238 -10.84130 -10.50961 -10.34668 -10.22652 -9.55464 -9.52440 -9.23602 -8.45590 -8.03275 -7.95586 -6.42088 -3.82985 2.32166 2.69641 3.16103 3.26687 3.33830 3.41871 3.88106 3.90559 4.09630 4.14682 4.24198 4.29934 4.47494 4.49383 4.54762 4.61707 4.70980 4.76385 4.83753 4.87571 4.94396 4.99414 5.17149 5.18092 5.25049 5.27081 5.30708 5.42011 5.45621 5.54423 5.56273 5.61190 5.65522 5.77177 5.78211 5.82710 5.90234 5.96087 5.96400 6.01700 6.26322 6.36003 6.51685 7.21855 7.26949 7.55064 7.64361 7.98140 8.06225 8.60772 9.17548 9.54082 10.05274 10.75702 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.036601 B = 0.001464 C = 0.001449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.812372 B =19117.228085 C =19325.207211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C 0.075 3.925 4 H 0.073 0.927 5 C -0.151 4.151 6 C -0.146 4.146 7 C 0.064 3.936 8 H 0.107 0.893 9 C 0.500 3.500 10 O -0.524 6.524 11 N -0.716 5.716 12 C 0.122 3.878 13 H 0.114 0.886 14 C -0.181 4.181 15 C 0.071 3.929 16 H 0.100 0.900 17 N -0.654 5.654 18 C 0.049 3.951 19 C 0.440 3.560 20 O -0.585 6.585 21 N -0.564 5.564 22 C -0.300 4.300 23 H 0.104 0.896 24 C 0.022 3.978 25 N -0.901 5.901 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.281 1.281 29 H -0.282 1.282 30 C -0.132 4.132 31 O -0.345 6.345 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.401 0.599 42 H 0.071 0.929 43 H 0.087 0.913 44 H 0.351 0.649 45 H 0.086 0.914 46 H 0.045 0.955 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.091 0.909 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.103 -26.037 -17.264 31.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C 0.018 3.982 4 H 0.090 0.910 5 C -0.188 4.188 6 C -0.184 4.184 7 C 0.003 3.997 8 H 0.124 0.876 9 C 0.285 3.715 10 O -0.398 6.398 11 N -0.368 5.368 12 C 0.017 3.983 13 H 0.132 0.868 14 C -0.222 4.222 15 C -0.041 4.041 16 H 0.118 0.882 17 N -0.285 5.285 18 C -0.083 4.083 19 C 0.226 3.774 20 O -0.469 6.469 21 N -0.200 5.200 22 C -0.429 4.429 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.757 3.243 27 H -0.192 1.192 28 H -0.207 1.207 29 H -0.208 1.208 30 C -0.171 4.171 31 O -0.263 6.263 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.112 0.888 40 H 0.101 0.899 41 H 0.235 0.765 42 H 0.090 0.910 43 H 0.106 0.894 44 H 0.172 0.828 45 H 0.105 0.895 46 H 0.063 0.937 47 H 0.226 0.774 48 H 0.081 0.919 49 H 0.110 0.890 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.150 -25.675 -17.623 31.216 hybrid contribution -0.091 0.355 1.217 1.270 sum -2.240 -25.320 -16.407 30.254 Atomic orbital electron populations 1.21728 0.95058 1.01489 1.02632 1.21649 0.97121 0.94340 1.02608 1.23140 0.93808 0.94015 0.87232 0.90951 1.23332 0.95911 0.97134 1.02433 1.23102 0.98736 0.98719 0.97871 1.22667 0.88165 0.88410 1.00471 0.87596 1.21033 0.86262 0.87282 0.76886 1.90718 1.18059 1.83770 1.47289 1.45970 1.15195 1.07271 1.68403 1.22420 0.98698 0.79450 0.97745 0.86814 1.24237 1.02381 0.98220 0.97349 1.22810 0.94058 0.92840 0.94360 0.88243 1.60014 1.38736 1.09746 1.20049 1.21726 0.95505 0.93725 0.97380 1.19834 0.88802 0.83772 0.85026 1.90518 1.22878 1.64461 1.69060 1.41876 1.17343 1.24574 1.36225 1.19758 0.98915 1.08541 1.15701 0.87867 1.25264 0.96875 0.96955 0.98849 1.69621 1.19016 1.23013 1.42615 0.85800 0.80113 0.78797 0.79629 1.19218 1.20740 1.20775 1.23469 0.98332 0.95535 0.99782 1.88602 1.41230 1.57682 1.38766 0.91810 0.92791 0.92784 0.90696 0.91137 0.89799 0.89466 0.88850 0.89857 0.76464 0.91045 0.89422 0.82835 0.89535 0.93730 0.77443 0.91918 0.89004 0.90630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.84 37.16 0.37 -0.68 16 2 C -0.12 -0.72 5.67 -26.73 -0.15 -0.87 16 3 C 0.08 0.55 3.41 -25.71 -0.09 0.46 16 4 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 5 C -0.15 -0.71 6.57 -24.48 -0.16 -0.87 16 6 C -0.15 -0.74 6.51 -24.79 -0.16 -0.90 16 7 C 0.06 0.52 3.95 -27.16 -0.11 0.41 16 8 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 9 C 0.50 5.37 7.04 -10.99 -0.08 5.30 16 10 O -0.52 -8.08 16.12 -14.08 -0.23 -8.30 16 11 N -0.72 -6.06 5.33 -53.01 -0.28 -6.35 16 12 C 0.12 1.20 4.24 -67.11 -0.28 0.91 16 13 H 0.11 1.27 7.46 -51.93 -0.39 0.88 16 14 C -0.18 -1.93 7.50 -25.92 -0.19 -2.12 16 15 C 0.07 0.83 4.18 -66.90 -0.28 0.55 16 16 H 0.10 1.11 7.87 -51.93 -0.41 0.70 16 17 N -0.65 -10.11 6.24 -107.13 -0.67 -10.78 16 18 C 0.05 0.85 6.01 -4.98 -0.03 0.82 16 19 C 0.44 10.34 7.82 -10.98 -0.09 10.26 16 20 O -0.58 -15.78 15.78 5.54 0.09 -15.69 16 21 N -0.56 -14.28 5.29 -10.96 -0.06 -14.34 16 22 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 23 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 25 N -0.90 -24.55 13.05 55.50 0.72 -23.82 16 26 Si 0.93 21.03 29.55 -169.99 -5.02 16.00 16 27 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 28 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 29 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 30 C -0.13 -1.28 7.63 -25.92 -0.20 -1.48 16 31 O -0.34 -3.57 9.97 -54.87 -0.55 -4.12 16 32 H 0.06 0.56 7.95 -51.93 -0.41 0.14 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.32 8.06 -51.93 -0.42 -0.09 16 38 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.09 0.27 8.14 -51.92 -0.42 -0.15 16 40 H 0.08 0.47 7.85 -51.93 -0.41 0.06 16 41 H 0.40 2.33 8.73 -40.82 -0.36 1.97 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.09 0.93 7.83 -51.93 -0.41 0.52 16 44 H 0.35 5.60 7.90 -39.30 -0.31 5.28 16 45 H 0.09 1.39 8.13 -51.93 -0.42 0.97 16 46 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 47 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 48 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 49 H 0.09 0.88 8.12 -51.93 -0.42 0.45 16 50 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 411.01 15.07 6.19 6.19 Total: -1.00 -34.78 411.01 -9.93 -44.71 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: -8.44 Total: 12.73 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: -1.69 Total: 3.77 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: -0.29 Total: -55.29 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -0.69 Total: -28.11 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.78 -9.93 -44.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690339408.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.981 kcal (2) G-P(sol) polarization free energy of solvation -34.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds