Wall clock time and date at job start Tue Mar 31 2020 23:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 110.27543 * 305.70225 * 3 2 1 5 5 C 1.54941 * 110.30657 * 183.60918 * 3 2 1 6 6 C 1.55307 * 100.94052 * 204.53993 * 5 3 2 7 7 C 1.54378 * 102.25419 * 34.13841 * 6 5 3 8 8 H 1.09004 * 109.83363 * 98.15313 * 7 6 5 9 9 C 1.50693 * 109.83128 * 219.12813 * 7 6 5 10 10 O 1.21286 * 120.00032 * 114.99443 * 9 7 6 11 11 N 1.34781 * 120.00015 * 294.99550 * 9 7 6 12 12 C 1.46503 * 119.99645 * 179.97438 * 11 9 7 13 13 H 1.08996 * 112.85457 * 336.19623 * 12 11 9 14 14 C 1.53788 * 113.61038 * 107.50940 * 12 11 9 15 15 C 1.53777 * 87.07966 * 139.97663 * 14 12 11 16 16 H 1.09000 * 113.61780 * 89.11709 * 15 14 12 17 17 N 1.46903 * 113.68829 * 220.00417 * 15 14 12 18 18 C 1.46894 * 110.99871 * 252.53399 * 17 15 14 19 19 C 1.50707 * 109.47202 * 179.97438 * 18 17 15 20 20 O 1.21297 * 119.99649 * 0.02562 * 19 18 17 21 21 N 1.34771 * 120.00216 * 180.02562 * 19 18 17 22 22 C 1.37104 * 120.00167 * 180.02562 * 21 19 18 23 23 H 1.07996 * 119.99379 * 359.97438 * 22 21 19 24 24 C 1.38947 * 120.00186 * 179.97438 * 22 21 19 25 25 N 1.31413 * 119.99887 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00134 * 179.97438 * 24 22 21 27 27 H 1.48508 * 109.46714 * 0.02562 * 26 24 22 28 28 H 1.48497 * 109.47253 * 119.99636 * 26 24 22 29 29 H 1.48498 * 109.47228 * 240.00384 * 26 24 22 30 30 C 1.53781 * 87.08433 * 334.56445 * 15 14 12 31 31 O 1.43470 * 107.62013 * 338.65071 * 7 6 5 32 32 H 1.09002 * 109.47164 * 299.99647 * 1 2 3 33 33 H 1.08993 * 109.47258 * 60.00139 * 1 2 3 34 34 H 1.09000 * 109.47021 * 179.97438 * 1 2 3 35 35 H 1.08993 * 109.46902 * 240.00322 * 2 1 3 36 36 H 1.08993 * 109.46975 * 120.00331 * 2 1 3 37 37 H 1.08998 * 111.13020 * 322.46410 * 5 3 2 38 38 H 1.09004 * 111.12493 * 86.62977 * 5 3 2 39 39 H 1.09009 * 110.84545 * 152.32627 * 6 5 3 40 40 H 1.08997 * 110.85391 * 275.73739 * 6 5 3 41 41 H 0.96990 * 119.99774 * 0.02562 * 11 9 7 42 42 H 1.08994 * 113.60843 * 254.52428 * 14 12 11 43 43 H 1.08996 * 113.61516 * 25.42362 * 14 12 11 44 44 H 1.00894 * 111.00164 * 16.49253 * 17 15 14 45 45 H 1.08994 * 109.47871 * 300.00111 * 18 17 15 46 46 H 1.09002 * 109.47597 * 60.00414 * 18 17 15 47 47 H 0.97001 * 120.00283 * 359.97438 * 21 19 18 48 48 H 0.96995 * 119.99726 * 180.02562 * 25 24 22 49 49 H 1.09004 * 113.61711 * 270.88694 * 30 15 14 50 50 H 1.09000 * 113.69001 * 139.99318 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6033 1.9975 -0.8303 5 6 3.5865 1.4661 -0.0915 6 6 3.8989 2.8440 0.5535 7 6 2.7946 2.9618 1.6258 8 1 3.1898 2.6659 2.5977 9 6 2.2910 4.3807 1.6873 10 8 1.1456 4.6317 1.3774 11 7 3.1135 5.3710 2.0867 12 6 2.6239 6.7506 2.1460 13 1 1.7745 6.9270 1.4862 14 6 2.4117 7.2678 3.5786 15 6 2.9955 8.6067 3.0976 16 1 2.2469 9.2915 2.6990 17 7 3.8905 9.2445 4.0723 18 6 3.2526 10.4181 4.6834 19 6 4.1983 11.0442 5.6759 20 8 5.2960 10.5605 5.8558 21 7 3.8244 12.1414 6.3633 22 6 4.6850 12.7113 7.2657 23 1 5.6623 12.2806 7.4259 24 6 4.2998 13.8429 7.9741 25 7 3.1107 14.3672 7.7787 26 14 5.4720 14.6189 9.2042 27 1 6.7384 13.8440 9.2377 28 1 5.7592 16.0184 8.7993 29 1 4.8506 14.6113 10.5529 30 6 3.7358 7.8048 2.0141 31 8 1.7261 2.0823 1.2473 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 -0.3633 -1.0277 -0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5139 0.8899 37 1 4.0267 0.6532 0.4859 38 1 3.9192 1.4337 -1.1290 39 1 4.8874 2.8419 1.0131 40 1 3.8168 3.6442 -0.1820 41 1 4.0295 5.1703 2.3342 42 1 1.3632 7.3282 3.8701 43 1 3.0301 6.7634 4.3210 44 1 4.1862 8.5857 4.7769 45 1 3.0069 11.1434 3.9078 46 1 2.3407 10.1107 5.1954 47 1 2.9468 12.5285 6.2191 48 1 2.8419 15.1573 8.2730 49 1 4.7162 7.4472 2.3289 50 1 3.7570 8.2977 1.0422 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690339408.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:35 Heat of formation + Delta-G solvation = -132.666137 kcal Electronic energy + Delta-G solvation = -28583.117162 eV Core-core repulsion = 24416.287636 eV Total energy + Delta-G solvation = -4166.829526 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.59132 -40.56775 -39.95222 -38.98145 -36.12741 -35.47439 -34.61577 -33.85326 -33.23528 -32.83418 -29.77594 -28.37319 -26.64328 -26.25420 -25.42625 -23.65778 -22.80544 -22.06846 -21.49678 -21.15690 -20.63256 -19.88287 -18.60669 -17.94869 -17.61574 -17.20851 -17.01409 -16.90516 -16.36355 -16.08013 -15.90024 -15.66177 -15.48684 -14.92817 -14.85437 -14.51845 -14.37241 -14.27906 -14.16649 -13.81259 -13.53913 -13.45519 -13.42682 -13.14180 -13.01457 -12.83772 -12.78531 -12.44810 -12.40940 -12.16515 -12.12097 -12.00264 -11.93814 -11.79348 -11.76081 -11.53145 -11.51029 -11.19313 -10.35736 -10.29150 -10.07247 -10.01387 -9.24590 -8.46710 -5.95590 1.36985 1.42330 1.51967 1.56554 1.98584 2.05332 2.29639 2.84945 2.98074 3.20744 3.41640 3.44892 3.58621 3.68409 3.72897 3.76474 3.91653 3.99162 4.00550 4.12926 4.21494 4.32976 4.34602 4.45766 4.47693 4.52883 4.54764 4.63602 4.77988 4.79912 4.80353 4.85947 4.93112 4.98213 5.00104 5.06367 5.08315 5.10899 5.13570 5.27398 5.40629 5.41333 5.54597 5.92443 5.95441 6.13917 6.41490 6.55287 6.60001 7.12614 7.21935 7.56385 8.11229 8.70897 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.036601 B = 0.001464 C = 0.001449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.812372 B =19117.228085 C =19325.207211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C 0.064 3.936 4 H 0.056 0.944 5 C -0.141 4.141 6 C -0.140 4.140 7 C 0.061 3.939 8 H 0.127 0.873 9 C 0.497 3.503 10 O -0.579 6.579 11 N -0.700 5.700 12 C 0.127 3.873 13 H 0.100 0.900 14 C -0.176 4.176 15 C 0.067 3.933 16 H 0.107 0.893 17 N -0.664 5.664 18 C 0.063 3.937 19 C 0.437 3.563 20 O -0.623 6.623 21 N -0.574 5.574 22 C -0.334 4.334 23 H 0.080 0.920 24 C -0.013 4.013 25 N -0.921 5.921 26 Si 0.993 3.007 27 H -0.272 1.272 28 H -0.271 1.271 29 H -0.271 1.271 30 C -0.118 4.118 31 O -0.378 6.378 32 H 0.037 0.963 33 H 0.049 0.951 34 H 0.066 0.934 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.123 0.877 40 H 0.076 0.924 41 H 0.417 0.583 42 H 0.063 0.937 43 H 0.090 0.910 44 H 0.347 0.653 45 H 0.104 0.896 46 H 0.064 0.936 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.098 0.902 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.840 -26.967 -17.822 32.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C 0.007 3.993 4 H 0.074 0.926 5 C -0.179 4.179 6 C -0.177 4.177 7 C 0.000 4.000 8 H 0.145 0.855 9 C 0.284 3.716 10 O -0.458 6.458 11 N -0.353 5.353 12 C 0.022 3.978 13 H 0.118 0.882 14 C -0.217 4.217 15 C -0.044 4.044 16 H 0.125 0.875 17 N -0.295 5.295 18 C -0.069 4.069 19 C 0.225 3.775 20 O -0.509 6.509 21 N -0.211 5.211 22 C -0.464 4.464 23 H 0.098 0.902 24 C -0.213 4.213 25 N -0.562 5.562 26 Si 0.817 3.183 27 H -0.197 1.197 28 H -0.196 1.196 29 H -0.197 1.197 30 C -0.157 4.157 31 O -0.296 6.296 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.115 0.885 36 H 0.091 0.909 37 H 0.117 0.883 38 H 0.122 0.878 39 H 0.141 0.859 40 H 0.094 0.906 41 H 0.254 0.746 42 H 0.082 0.918 43 H 0.109 0.891 44 H 0.167 0.833 45 H 0.123 0.877 46 H 0.082 0.918 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.116 0.884 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.874 -26.611 -18.195 32.248 hybrid contribution -0.524 0.611 1.358 1.578 sum -1.398 -26.000 -16.837 31.007 Atomic orbital electron populations 1.21730 0.96226 1.01860 1.01190 1.21665 0.96097 0.93812 1.03765 1.23311 0.96001 0.94171 0.85770 0.92622 1.23334 0.93525 0.97294 1.03704 1.23142 0.98955 0.98732 0.96908 1.22881 0.88445 0.86143 1.02534 0.85547 1.21671 0.85585 0.88693 0.75687 1.90691 1.20472 1.84713 1.49958 1.45840 1.15738 1.06447 1.67309 1.22218 0.98486 0.80248 0.96891 0.88185 1.24184 1.01904 0.97751 0.97842 1.22944 0.94247 0.93161 0.94072 0.87479 1.60051 1.39885 1.09439 1.20150 1.21594 0.94323 0.94624 0.96370 1.20901 0.89091 0.82703 0.84800 1.90485 1.24948 1.65278 1.70226 1.41954 1.17257 1.25372 1.36517 1.19723 0.98901 1.09948 1.17799 0.90228 1.26046 0.98433 0.96769 1.00023 1.69681 1.20020 1.23313 1.43172 0.84863 0.77861 0.77966 0.77597 1.19684 1.19647 1.19652 1.23374 0.98200 0.94680 0.99436 1.88579 1.42886 1.58205 1.39963 0.94335 0.93140 0.91470 0.88454 0.90859 0.88331 0.87842 0.85853 0.90555 0.74564 0.91777 0.89127 0.83333 0.87749 0.91795 0.77008 0.91327 0.88367 0.89719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.84 71.98 0.71 -1.43 16 2 C -0.12 -1.27 5.67 30.60 0.17 -1.09 16 3 C 0.06 0.90 3.41 31.26 0.11 1.01 16 4 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 5 C -0.14 -0.97 6.57 32.05 0.21 -0.76 16 6 C -0.14 -1.08 6.51 31.85 0.21 -0.87 16 7 C 0.06 0.91 3.95 30.31 0.12 1.03 16 8 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 9 C 0.50 10.51 7.04 87.65 0.62 11.13 16 10 O -0.58 -18.51 16.12 15.73 0.25 -18.25 16 11 N -0.70 -10.96 5.33 -440.01 -2.34 -13.30 16 12 C 0.13 2.36 4.24 45.52 0.19 2.56 16 13 H 0.10 2.21 7.46 -2.39 -0.02 2.20 16 14 C -0.18 -3.56 7.50 31.12 0.23 -3.33 16 15 C 0.07 1.44 4.18 45.44 0.19 1.63 16 16 H 0.11 2.18 7.87 -2.39 -0.02 2.16 16 17 N -0.66 -19.68 6.24 -492.86 -3.08 -22.75 16 18 C 0.06 2.12 6.01 85.56 0.51 2.64 16 19 C 0.44 20.64 7.82 87.66 0.69 21.33 16 20 O -0.62 -34.10 15.78 -3.08 -0.05 -34.15 16 21 N -0.57 -29.43 5.29 -306.98 -1.62 -31.06 16 22 C -0.33 -18.99 9.68 84.04 0.81 -18.18 16 23 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 24 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 25 N -0.92 -49.79 13.05 21.66 0.28 -49.50 16 26 Si 0.99 42.86 29.55 68.60 2.03 44.89 16 27 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 28 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 29 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 30 C -0.12 -2.05 7.63 31.12 0.24 -1.82 16 31 O -0.38 -7.85 9.97 -130.21 -1.30 -9.14 16 32 H 0.04 0.72 7.95 -2.39 -0.02 0.70 16 33 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.10 0.43 8.06 -2.39 -0.02 0.41 16 38 H 0.10 0.40 8.14 -2.38 -0.02 0.38 16 39 H 0.12 0.23 8.14 -2.38 -0.02 0.21 16 40 H 0.08 0.71 7.85 -2.39 -0.02 0.70 16 41 H 0.42 3.87 8.73 -92.72 -0.81 3.06 16 42 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.09 1.79 7.83 -2.39 -0.02 1.78 16 44 H 0.35 10.75 7.90 -89.70 -0.71 10.04 16 45 H 0.10 3.16 8.13 -2.39 -0.02 3.15 16 46 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 47 H 0.40 19.33 7.90 -92.71 -0.73 18.60 16 48 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 49 H 0.10 1.63 8.12 -2.38 -0.02 1.61 16 50 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -77.56 411.01 -1.64 -79.20 By element: Atomic # 1 Polarization: 41.76 SS G_CDS: -1.29 Total: 40.47 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: 5.48 Total: 13.60 kcal Atomic # 7 Polarization: -109.85 SS G_CDS: -6.76 Total: -116.62 kcal Atomic # 8 Polarization: -60.45 SS G_CDS: -1.09 Total: -61.54 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -77.56 -1.64 -79.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690339408.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.469 kcal (2) G-P(sol) polarization free energy of solvation -77.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds