Wall clock time and date at job start Tue Mar 31 2020 23:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47270 * 2 1 4 4 H 1.09003 * 110.32911 * 304.20843 * 3 2 1 5 5 C 1.54468 * 110.37098 * 181.83515 * 3 2 1 6 6 C 1.54517 * 104.06212 * 217.19360 * 5 3 2 7 7 C 1.54478 * 104.06248 * 0.02562 * 6 5 3 8 8 H 1.09005 * 110.46600 * 265.10248 * 7 6 5 9 9 C 1.50691 * 110.37025 * 142.81085 * 7 6 5 10 10 O 1.21289 * 120.00113 * 248.16374 * 9 7 6 11 11 N 1.34773 * 120.00316 * 68.16646 * 9 7 6 12 12 C 1.46501 * 120.00122 * 179.97438 * 11 9 7 13 13 H 1.08993 * 112.90929 * 336.25213 * 12 11 9 14 14 C 1.53962 * 113.66387 * 107.55425 * 12 11 9 15 15 C 1.53782 * 87.11063 * 139.88885 * 14 12 11 16 16 H 1.08996 * 113.68722 * 89.19879 * 15 14 12 17 17 N 1.46904 * 113.61210 * 220.08983 * 15 14 12 18 18 C 1.46901 * 110.99704 * 252.49938 * 17 15 14 19 19 C 1.50695 * 109.47160 * 180.02562 * 18 17 15 20 20 O 1.21296 * 119.99898 * 359.97438 * 19 18 17 21 21 N 1.34779 * 120.00546 * 180.02562 * 19 18 17 22 22 C 1.37091 * 120.00100 * 179.97438 * 21 19 18 23 23 H 1.07996 * 120.00633 * 359.97438 * 22 21 19 24 24 C 1.38955 * 119.99556 * 180.02562 * 22 21 19 25 25 N 1.31409 * 119.99689 * 180.02562 * 24 22 21 26 26 Si 1.86800 * 120.00216 * 359.97438 * 24 22 21 27 27 H 1.48501 * 109.46762 * 90.00382 * 26 24 22 28 28 H 1.48497 * 109.47183 * 210.00171 * 26 24 22 29 29 H 1.48500 * 109.46956 * 330.00345 * 26 24 22 30 30 C 1.53781 * 87.08260 * 334.63747 * 15 14 12 31 31 O 1.44427 * 104.79967 * 23.98077 * 7 6 5 32 32 H 1.09002 * 109.47158 * 299.99772 * 1 2 3 33 33 H 1.09006 * 109.47067 * 59.99730 * 1 2 3 34 34 H 1.08997 * 109.47545 * 179.97438 * 1 2 3 35 35 H 1.09003 * 109.46465 * 240.00848 * 2 1 3 36 36 H 1.08993 * 109.47081 * 120.00585 * 2 1 3 37 37 H 1.09005 * 110.51546 * 335.83686 * 5 3 2 38 38 H 1.09003 * 110.51510 * 98.41154 * 5 3 2 39 39 H 1.09006 * 110.50460 * 241.35630 * 6 5 3 40 40 H 1.08998 * 110.51270 * 118.64676 * 6 5 3 41 41 H 0.97002 * 120.00080 * 0.02562 * 11 9 7 42 42 H 1.08997 * 113.53543 * 25.33559 * 14 12 11 43 43 H 1.08998 * 113.73879 * 254.47157 * 14 12 11 44 44 H 1.00898 * 110.99945 * 128.54891 * 17 15 14 45 45 H 1.09009 * 109.46980 * 300.00288 * 18 17 15 46 46 H 1.08999 * 109.47354 * 59.99558 * 18 17 15 47 47 H 0.96997 * 119.99365 * 359.97438 * 21 19 18 48 48 H 0.97007 * 119.99906 * 179.97438 * 25 24 22 49 49 H 1.09002 * 113.61445 * 139.98212 * 30 15 14 50 50 H 1.09002 * 113.61408 * 270.79943 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6245 1.9911 -0.8453 5 6 3.5839 1.4670 -0.0464 6 6 3.9679 2.6570 0.8613 7 6 2.6107 3.2103 1.3492 8 1 2.2829 4.0320 0.7122 9 6 2.7147 3.6673 2.7813 10 8 2.1260 3.0654 3.6543 11 7 3.4619 4.7450 3.0922 12 6 3.5627 5.1896 4.4845 13 1 2.7179 4.8695 5.0943 14 6 4.9317 4.9020 5.1276 15 6 4.8220 6.2837 5.7936 16 1 4.3225 6.2646 6.7621 17 7 6.0891 7.0266 5.8197 18 6 6.6453 7.0710 7.1786 19 6 7.9413 7.8397 7.1660 20 8 8.3607 8.3045 6.1271 21 7 8.6351 8.0100 8.3090 22 6 9.8144 8.7090 8.2973 23 1 10.1878 9.1228 7.3723 24 6 10.5298 8.8840 9.4756 25 7 11.6600 9.5544 9.4646 26 14 9.8844 8.1676 11.0755 27 1 10.4137 6.7912 11.2505 28 1 10.3260 9.0159 12.2115 29 1 8.4005 8.1261 11.0362 30 6 3.8975 6.6834 4.6315 31 8 1.6980 2.0961 1.2420 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3634 -1.0276 -0.0005 35 1 1.8933 -0.5137 -0.8901 36 1 1.8933 -0.5139 0.8899 37 1 3.9927 0.5373 0.3495 38 1 3.9328 1.6331 -1.0656 39 1 4.5067 3.4139 0.2910 40 1 4.5666 2.3157 1.7058 41 1 3.9325 5.2268 2.3940 42 1 5.7449 4.8286 4.4055 43 1 4.9184 4.0736 5.8358 44 1 5.9707 7.9567 5.4469 45 1 5.9373 7.5638 7.8451 46 1 6.8282 6.0554 7.5297 47 1 8.2999 7.6380 9.1397 48 1 12.1593 9.6769 10.2872 49 1 3.0479 7.2931 4.9392 50 1 4.4279 7.0984 3.7744 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690339409.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:39 Heat of formation + Delta-G solvation = -126.517813 kcal Electronic energy + Delta-G solvation = -28645.031892 eV Core-core repulsion = 24478.468977 eV Total energy + Delta-G solvation = -4166.562915 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.53481 -40.56024 -40.06343 -39.02363 -36.16626 -35.50517 -34.60294 -33.90254 -33.66964 -32.85402 -29.76132 -28.54100 -26.67782 -26.15532 -25.39439 -23.60142 -22.75188 -21.96374 -21.49647 -21.31519 -20.75683 -20.16856 -18.28825 -18.01062 -17.58474 -17.41961 -17.00511 -16.78350 -16.46228 -16.23818 -15.95064 -15.57384 -15.43043 -14.99626 -14.81859 -14.63244 -14.52091 -14.42236 -14.26255 -14.05481 -14.00228 -13.37065 -13.31952 -13.19153 -12.93311 -12.85772 -12.70260 -12.41446 -12.39626 -12.22313 -12.02230 -11.92662 -11.88611 -11.72036 -11.54687 -11.53628 -11.50483 -10.99247 -10.62396 -10.41479 -10.24593 -10.05690 -9.31921 -8.41373 -6.02084 1.30329 1.35666 1.44293 1.49674 1.88715 1.95898 2.22851 2.75482 3.02421 3.15247 3.40942 3.47785 3.54990 3.63543 3.65701 3.89736 3.91682 3.95307 4.03887 4.14140 4.16831 4.18379 4.33482 4.37806 4.42891 4.53917 4.57766 4.59070 4.74374 4.81857 4.86074 4.88487 4.92760 5.00902 5.01831 5.07392 5.08360 5.13844 5.16106 5.21906 5.41307 5.51495 5.56248 5.83854 5.92535 6.10966 6.42439 6.52588 6.59973 6.88151 7.19357 7.40066 7.96278 8.76165 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.028127 B = 0.001559 C = 0.001545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.228797 B =17954.791626 C =18114.806527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C 0.064 3.936 4 H 0.088 0.912 5 C -0.146 4.146 6 C -0.141 4.141 7 C 0.056 3.944 8 H 0.122 0.878 9 C 0.515 3.485 10 O -0.576 6.576 11 N -0.699 5.699 12 C 0.126 3.874 13 H 0.103 0.897 14 C -0.137 4.137 15 C 0.061 3.939 16 H 0.090 0.910 17 N -0.669 5.669 18 C 0.060 3.940 19 C 0.449 3.551 20 O -0.613 6.613 21 N -0.592 5.592 22 C -0.330 4.330 23 H 0.056 0.944 24 C -0.013 4.013 25 N -0.934 5.934 26 Si 0.964 3.036 27 H -0.259 1.259 28 H -0.275 1.275 29 H -0.231 1.231 30 C -0.131 4.131 31 O -0.376 6.376 32 H 0.037 0.963 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.099 0.901 36 H 0.055 0.945 37 H 0.073 0.927 38 H 0.107 0.893 39 H 0.116 0.884 40 H 0.064 0.936 41 H 0.417 0.583 42 H 0.086 0.914 43 H 0.062 0.938 44 H 0.349 0.651 45 H 0.078 0.922 46 H 0.109 0.891 47 H 0.389 0.611 48 H 0.279 0.721 49 H 0.090 0.910 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.727 -16.441 -17.872 33.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C 0.007 3.993 4 H 0.106 0.894 5 C -0.184 4.184 6 C -0.179 4.179 7 C -0.005 4.005 8 H 0.139 0.861 9 C 0.302 3.698 10 O -0.454 6.454 11 N -0.351 5.351 12 C 0.020 3.980 13 H 0.121 0.879 14 C -0.177 4.177 15 C -0.050 4.050 16 H 0.108 0.892 17 N -0.302 5.302 18 C -0.072 4.072 19 C 0.237 3.763 20 O -0.498 6.498 21 N -0.233 5.233 22 C -0.459 4.459 23 H 0.074 0.926 24 C -0.212 4.212 25 N -0.574 5.574 26 Si 0.784 3.216 27 H -0.183 1.183 28 H -0.200 1.200 29 H -0.155 1.155 30 C -0.170 4.170 31 O -0.296 6.296 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.117 0.883 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.125 0.875 39 H 0.135 0.865 40 H 0.083 0.917 41 H 0.255 0.745 42 H 0.104 0.896 43 H 0.081 0.919 44 H 0.169 0.831 45 H 0.096 0.904 46 H 0.127 0.873 47 H 0.225 0.775 48 H 0.088 0.912 49 H 0.108 0.892 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -23.487 -17.072 -17.890 34.105 hybrid contribution 0.187 0.815 1.245 1.499 sum -23.300 -16.257 -16.646 32.928 Atomic orbital electron populations 1.21715 0.95487 1.01943 1.01633 1.21634 0.96663 0.94153 1.03101 1.23378 0.94770 0.94576 0.86586 0.89385 1.23020 0.94859 0.98718 1.01807 1.22938 0.95070 0.99554 1.00345 1.23014 0.92117 0.92583 0.92775 0.86057 1.20817 0.77948 0.80102 0.90949 1.90704 1.47149 1.56341 1.51250 1.45754 1.49804 1.29653 1.09933 1.22270 0.97868 0.95279 0.82539 0.87926 1.23587 0.97177 0.96973 0.99985 1.22899 0.88511 0.95115 0.98436 0.89196 1.60174 1.26871 1.22958 1.20166 1.21700 0.92345 1.01021 0.92144 1.20993 0.88054 0.84051 0.83218 1.90538 1.72059 1.54335 1.32846 1.42049 1.21139 1.50593 1.09558 1.19022 0.98585 1.31557 0.96718 0.92553 1.26089 0.95565 0.97052 1.02508 1.69802 1.15985 1.41462 1.30188 0.85383 0.80479 0.78990 0.76790 1.18323 1.20014 1.15457 1.23533 0.99428 0.95083 0.98948 1.89272 1.55799 1.42652 1.41830 0.94333 0.91764 0.91967 0.88253 0.92628 0.90779 0.87491 0.86514 0.91689 0.74521 0.89574 0.91915 0.83135 0.90386 0.87345 0.77516 0.91159 0.89172 0.87938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.83 71.98 0.71 -1.18 16 2 C -0.12 -1.37 5.57 30.60 0.17 -1.20 16 3 C 0.06 0.78 3.28 31.09 0.10 0.88 16 4 H 0.09 0.76 8.14 -2.39 -0.02 0.75 16 5 C -0.15 -1.30 6.63 31.61 0.21 -1.09 16 6 C -0.14 -1.44 6.62 31.61 0.21 -1.23 16 7 C 0.06 0.83 3.71 30.35 0.11 0.94 16 8 H 0.12 1.07 8.14 -2.38 -0.02 1.05 16 9 C 0.52 10.78 7.07 87.65 0.62 11.40 16 10 O -0.58 -18.16 16.16 15.29 0.25 -17.91 16 11 N -0.70 -10.62 5.36 -439.75 -2.36 -12.98 16 12 C 0.13 2.18 4.25 45.58 0.19 2.37 16 13 H 0.10 2.10 7.47 -2.39 -0.02 2.09 16 14 C -0.14 -2.73 7.69 31.18 0.24 -2.49 16 15 C 0.06 1.16 4.14 45.44 0.19 1.35 16 16 H 0.09 1.52 7.87 -2.39 -0.02 1.50 16 17 N -0.67 -18.06 6.18 -492.84 -3.05 -21.11 16 18 C 0.06 1.78 6.01 85.56 0.51 2.29 16 19 C 0.45 19.89 7.82 87.65 0.69 20.58 16 20 O -0.61 -33.33 15.78 -3.08 -0.05 -33.38 16 21 N -0.59 -27.67 5.09 -306.99 -1.56 -29.24 16 22 C -0.33 -19.24 10.16 84.04 0.85 -18.38 16 23 H 0.06 3.91 7.39 -2.91 -0.02 3.89 16 24 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 25 N -0.93 -56.12 13.96 21.66 0.30 -55.82 16 26 Si 0.96 38.68 27.74 68.60 1.90 40.58 16 27 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 28 H -0.28 -10.96 7.11 99.48 0.71 -10.26 16 29 H -0.23 -7.79 6.52 99.48 0.65 -7.14 16 30 C -0.13 -1.92 7.40 31.12 0.23 -1.69 16 31 O -0.38 -7.71 10.26 -130.63 -1.34 -9.05 16 32 H 0.04 0.67 7.91 -2.39 -0.02 0.65 16 33 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 34 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.07 0.75 7.87 -2.38 -0.02 0.73 16 38 H 0.11 0.41 8.14 -2.39 -0.02 0.40 16 39 H 0.12 0.50 8.14 -2.38 -0.02 0.48 16 40 H 0.06 0.90 7.86 -2.39 -0.02 0.88 16 41 H 0.42 3.80 8.73 -92.71 -0.81 2.99 16 42 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.35 9.83 8.24 -89.70 -0.74 9.09 16 45 H 0.08 1.86 8.13 -2.38 -0.02 1.84 16 46 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 47 H 0.39 15.08 5.76 -92.71 -0.53 14.55 16 48 H 0.28 15.32 8.31 -92.70 -0.77 14.55 16 49 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 50 H 0.10 1.41 8.12 -2.39 -0.02 1.39 16 Total: -1.00 -85.08 408.29 -1.58 -86.65 By element: Atomic # 1 Polarization: 41.15 SS G_CDS: -1.18 Total: 39.97 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: 5.50 Total: 12.28 kcal Atomic # 7 Polarization: -112.47 SS G_CDS: -6.66 Total: -119.14 kcal Atomic # 8 Polarization: -59.20 SS G_CDS: -1.14 Total: -60.35 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 1.90 Total: 40.58 kcal Total: -85.08 -1.58 -86.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690339409.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.864 kcal (2) G-P(sol) polarization free energy of solvation -85.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds