Wall clock time and date at job start Tue Mar 31 2020 23:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50703 * 120.00380 * 2 1 4 4 C 1.52999 * 109.46916 * 120.00008 * 3 2 1 5 5 O 1.42905 * 109.46832 * 0.02562 * 3 2 1 6 6 C 1.52999 * 109.47210 * 240.00104 * 3 2 1 7 7 C 1.50706 * 109.46973 * 59.65878 * 6 3 2 8 8 O 1.21280 * 119.99807 * 356.89234 * 7 6 3 9 9 N 1.34776 * 119.99899 * 176.89410 * 7 6 3 10 10 C 1.46502 * 119.99870 * 179.97438 * 9 7 6 11 11 C 1.52993 * 109.46995 * 173.50953 * 10 9 7 12 12 H 1.08994 * 110.33451 * 57.49675 * 11 10 9 13 13 C 1.54911 * 110.37596 * 179.87355 * 11 10 9 14 14 C 1.55135 * 101.65659 * 155.89899 * 13 11 10 15 15 C 1.54322 * 103.02011 * 324.34614 * 14 13 11 16 16 N 1.47449 * 107.23325 * 22.28273 * 15 14 13 17 17 C 1.46895 * 111.00065 * 123.25589 * 16 15 14 18 18 C 1.50704 * 109.46951 * 56.30777 * 17 16 15 19 19 O 1.21297 * 120.00083 * 0.02562 * 18 17 16 20 20 N 1.34778 * 119.99959 * 179.97438 * 18 17 16 21 21 C 1.37107 * 119.99932 * 180.02562 * 20 18 17 22 22 H 1.07992 * 119.99692 * 359.97438 * 21 20 18 23 23 C 1.38940 * 119.99784 * 180.02562 * 21 20 18 24 24 N 1.31415 * 119.99938 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 120.00412 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.46923 * 89.99912 * 25 23 21 27 27 H 1.48498 * 109.47259 * 210.00223 * 25 23 21 28 28 H 1.48498 * 109.47303 * 330.00438 * 25 23 21 29 29 H 1.08003 * 120.00438 * 179.97438 * 1 2 3 30 30 H 1.08006 * 120.00093 * 359.97438 * 1 2 3 31 31 H 1.08004 * 119.99670 * 180.02562 * 2 1 3 32 32 H 1.09000 * 109.46819 * 184.77720 * 4 3 2 33 33 H 1.08998 * 109.47317 * 304.78112 * 4 3 2 34 34 H 1.08997 * 109.47420 * 64.78160 * 4 3 2 35 35 H 0.96694 * 113.99970 * 300.00276 * 5 3 2 36 36 H 1.08994 * 109.47346 * 299.65980 * 6 3 2 37 37 H 1.08995 * 109.46791 * 179.65661 * 6 3 2 38 38 H 0.96997 * 120.00137 * 359.97438 * 9 7 6 39 39 H 1.08998 * 109.47174 * 293.50998 * 10 9 7 40 40 H 1.09000 * 109.46680 * 53.51208 * 10 9 7 41 41 H 1.08999 * 110.98975 * 273.99214 * 13 11 10 42 42 H 1.09001 * 110.98908 * 37.80069 * 13 11 10 43 43 H 1.09001 * 110.70385 * 205.96526 * 14 13 11 44 44 H 1.08993 * 110.70743 * 82.72481 * 14 13 11 45 45 H 1.09004 * 109.88811 * 262.88202 * 15 14 13 46 46 H 1.08996 * 110.02907 * 141.76279 * 15 14 13 47 47 H 1.08994 * 109.47284 * 176.30657 * 17 16 15 48 48 H 1.08997 * 109.47508 * 296.30905 * 17 16 15 49 49 H 0.96992 * 120.00120 * 0.02562 * 20 18 17 50 50 H 0.96996 * 120.00177 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3860 1.2492 5 8 1.1349 2.3913 0.0006 6 6 2.9432 1.3861 -1.2492 7 6 2.0775 1.2979 -2.4797 8 8 0.8821 1.1252 -2.3690 9 7 2.6317 1.4110 -3.7030 10 6 1.7902 1.3247 -4.8992 11 6 2.6301 1.6436 -6.1376 12 1 3.4783 0.9626 -6.2056 13 6 1.7604 1.5552 -7.4165 14 6 2.5413 2.4758 -8.3908 15 6 3.0730 3.5903 -7.4652 16 7 3.0978 3.0456 -6.0953 17 6 4.4456 3.1336 -5.5180 18 6 4.9157 4.5650 -5.5556 19 8 4.1981 5.4271 -6.0174 20 7 6.1329 4.8874 -5.0751 21 6 6.5603 6.1897 -5.1088 22 1 5.9218 6.9570 -5.5208 23 6 7.8154 6.5220 -4.6140 24 7 8.2249 7.7703 -4.6458 25 14 8.9202 5.1946 -3.9021 26 1 9.7694 4.6268 -4.9799 27 1 9.7854 5.7831 -2.8484 28 1 8.0841 4.1184 -3.3122 29 1 -0.5401 -0.9353 -0.0004 30 1 -0.5400 0.9354 0.0004 31 1 1.8499 -0.9354 -0.0004 32 1 3.4228 2.3638 1.2931 33 1 2.3273 1.2433 2.1372 34 1 3.7060 0.6087 1.2075 35 1 0.5433 2.4034 -0.7641 36 1 3.6554 0.5611 -1.2463 37 1 3.4835 2.3327 -1.2523 38 1 3.5876 1.5495 -3.7915 39 1 1.3837 0.3171 -4.9855 40 1 0.9724 2.0410 -4.8205 41 1 1.7213 0.5328 -7.7922 42 1 0.7574 1.9410 -7.2340 43 1 1.8750 2.8890 -9.1481 44 1 3.3656 1.9347 -8.8551 45 1 2.4112 4.4554 -7.5084 46 1 4.0797 3.8783 -7.7679 47 1 4.4220 2.7860 -4.4852 48 1 5.1295 2.5114 -6.0952 49 1 6.7066 4.1982 -4.7055 50 1 9.1012 8.0022 -4.3007 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691076629.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:01 Heat of formation + Delta-G solvation = -86.935506 kcal Electronic energy + Delta-G solvation = -30741.803154 eV Core-core repulsion = 26576.956657 eV Total energy + Delta-G solvation = -4164.846498 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.46935 -39.59403 -38.02690 -37.53598 -34.68500 -34.04891 -33.04078 -32.13764 -31.65530 -31.55200 -30.15387 -28.21431 -27.00041 -25.01578 -23.94258 -22.52903 -21.51188 -20.53029 -20.29369 -19.62291 -19.39470 -18.28587 -17.38101 -17.03100 -16.56385 -16.25662 -15.76613 -15.56488 -15.25671 -14.93799 -14.85481 -14.47542 -14.32783 -13.82770 -13.67993 -13.55147 -12.99693 -12.81289 -12.69483 -12.62081 -12.46510 -12.37014 -12.25881 -12.19351 -11.97214 -11.79653 -11.69763 -11.37141 -11.34490 -11.15671 -11.09563 -10.99116 -10.66940 -10.64279 -10.19506 -10.06563 -10.03149 -9.61575 -9.24257 -9.07929 -8.58468 -8.24064 -8.11912 -6.36344 -3.88237 2.29188 2.54636 2.95496 3.00428 3.06095 3.10008 3.63880 3.82284 4.04407 4.16098 4.38801 4.50654 4.58485 4.62813 4.68215 4.76266 4.92226 5.03573 5.13764 5.15026 5.16037 5.19741 5.32592 5.37164 5.41745 5.46637 5.50630 5.60946 5.63248 5.66588 5.72794 5.77194 5.80903 5.88907 5.93986 5.97844 6.02758 6.18652 6.33446 6.49272 6.54528 6.75779 7.08968 7.11412 7.35392 7.52022 7.66110 8.07805 8.12365 8.53290 8.89149 9.35665 9.74987 10.76695 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008287 B = 0.003731 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3377.815917 B = 7503.240032 C =10176.625439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.190 4.190 3 C 0.179 3.821 4 C -0.136 4.136 5 O -0.559 6.559 6 C -0.172 4.172 7 C 0.517 3.483 8 O -0.542 6.542 9 N -0.723 5.723 10 C 0.137 3.863 11 C 0.054 3.946 12 H 0.059 0.941 13 C -0.117 4.117 14 C -0.147 4.147 15 C 0.061 3.939 16 N -0.501 5.501 17 C 0.037 3.963 18 C 0.449 3.551 19 O -0.557 6.557 20 N -0.589 5.589 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.879 5.879 25 Si 0.879 3.121 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.270 1.270 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.107 0.893 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.386 0.614 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.398 0.602 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.063 0.937 45 H 0.085 0.915 46 H 0.060 0.940 47 H 0.081 0.919 48 H 0.050 0.950 49 H 0.369 0.631 50 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.964 -20.380 3.155 22.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.208 4.208 3 C 0.137 3.863 4 C -0.193 4.193 5 O -0.370 6.370 6 C -0.213 4.213 7 C 0.304 3.696 8 O -0.420 6.420 9 N -0.376 5.376 10 C 0.013 3.987 11 C -0.055 4.055 12 H 0.076 0.924 13 C -0.156 4.156 14 C -0.185 4.185 15 C -0.066 4.066 16 N -0.226 5.226 17 C -0.095 4.095 18 C 0.235 3.765 19 O -0.438 6.438 20 N -0.229 5.229 21 C -0.434 4.434 22 H 0.138 0.862 23 C -0.161 4.161 24 N -0.519 5.519 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.201 1.201 28 H -0.195 1.195 29 H 0.110 0.890 30 H 0.120 0.880 31 H 0.125 0.875 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.238 0.762 36 H 0.120 0.880 37 H 0.124 0.876 38 H 0.234 0.766 39 H 0.084 0.916 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.094 0.906 44 H 0.082 0.918 45 H 0.103 0.897 46 H 0.079 0.921 47 H 0.099 0.901 48 H 0.068 0.932 49 H 0.202 0.798 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.160 -19.292 3.820 22.136 hybrid contribution 2.020 -1.518 -0.535 2.582 sum -8.140 -20.809 3.285 22.585 Atomic orbital electron populations 1.23622 0.95979 1.01623 0.97548 1.23241 0.96809 0.97745 1.02999 1.19772 0.88121 0.85272 0.93111 1.21717 0.98681 1.02845 0.96064 1.86456 1.50869 1.48675 1.50988 1.22491 0.99851 1.05547 0.93377 1.20575 0.88847 0.75586 0.84615 1.90634 1.15442 1.49315 1.86617 1.46180 1.11866 1.73605 1.05917 1.21372 0.93807 1.01104 0.82400 1.22896 0.97351 0.90330 0.94886 0.92352 1.22621 0.99381 0.99954 0.93606 1.22904 0.99777 0.97443 0.98394 1.22705 1.01975 0.96754 0.85169 1.63274 1.22475 1.15137 1.21668 1.22198 0.90212 0.97089 0.99990 1.19542 0.82912 0.89419 0.84644 1.90585 1.54647 1.49859 1.48747 1.42197 1.15160 1.09536 1.55965 1.19419 1.01323 0.83745 1.38897 0.86246 1.25039 0.97011 0.96372 0.97679 1.69617 1.20225 1.16497 1.45578 0.86681 0.81350 0.81596 0.79783 1.19674 1.20093 1.19544 0.89045 0.88012 0.87542 0.91337 0.91552 0.91113 0.76182 0.88020 0.87634 0.76588 0.91582 0.90146 0.90802 0.90142 0.90631 0.91798 0.89656 0.92104 0.90088 0.93238 0.79827 0.91548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 12.62 29.02 0.37 -1.27 16 2 C -0.19 -1.98 7.49 -36.02 -0.27 -2.25 16 3 C 0.18 1.93 1.08 -91.77 -0.10 1.83 16 4 C -0.14 -1.24 8.82 37.16 0.33 -0.91 16 5 O -0.56 -7.45 11.92 -52.33 -0.62 -8.08 16 6 C -0.17 -1.69 4.97 -27.88 -0.14 -1.83 16 7 C 0.52 6.09 7.33 -10.98 -0.08 6.01 16 8 O -0.54 -7.52 11.92 -11.54 -0.14 -7.66 16 9 N -0.72 -7.84 5.32 -60.29 -0.32 -8.16 16 10 C 0.14 1.50 5.38 -4.04 -0.02 1.48 16 11 C 0.05 0.58 2.64 -66.18 -0.17 0.41 16 12 H 0.06 0.57 7.73 -51.93 -0.40 0.16 16 13 C -0.12 -1.11 6.49 -24.59 -0.16 -1.26 16 14 C -0.15 -1.58 6.94 -24.91 -0.17 -1.75 16 15 C 0.06 0.92 5.15 -2.83 -0.01 0.91 16 16 N -0.50 -7.31 4.72 -224.81 -1.06 -8.37 16 17 C 0.04 0.57 5.02 -4.98 -0.03 0.54 16 18 C 0.45 9.68 7.11 -10.98 -0.08 9.60 16 19 O -0.56 -14.27 14.04 5.54 0.08 -14.19 16 20 N -0.59 -13.39 5.09 -10.96 -0.06 -13.45 16 21 C -0.31 -8.39 10.16 -14.93 -0.15 -8.54 16 22 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 23 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 24 N -0.88 -25.25 13.96 55.50 0.77 -24.47 16 25 Si 0.88 18.69 27.74 -169.99 -4.71 13.98 16 26 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 27 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 28 H -0.27 -5.12 6.52 56.52 0.37 -4.76 16 29 H 0.09 0.86 8.06 -52.48 -0.42 0.44 16 30 H 0.10 1.19 6.41 -52.48 -0.34 0.85 16 31 H 0.11 0.95 8.06 -52.48 -0.42 0.53 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.39 5.17 5.74 45.56 0.26 5.43 16 36 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.40 3.87 5.74 -40.82 -0.23 3.64 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.08 1.05 8.11 -51.93 -0.42 0.63 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.08 0.77 8.06 -51.93 -0.42 0.35 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.09 1.47 8.01 -51.93 -0.42 1.05 16 46 H 0.06 1.04 6.66 -51.93 -0.35 0.70 16 47 H 0.08 1.06 5.48 -51.93 -0.28 0.78 16 48 H 0.05 0.66 8.02 -51.93 -0.42 0.24 16 49 H 0.37 7.28 5.76 -40.82 -0.24 7.05 16 50 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 392.96 15.07 5.92 5.92 Total: -1.00 -33.14 392.96 -8.38 -41.53 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: -7.45 Total: 18.96 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -0.79 Total: 3.99 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: -0.66 Total: -54.46 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -0.68 Total: -29.92 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -4.71 Total: 13.98 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.14 -8.38 -41.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691076629.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.410 kcal (2) G-P(sol) polarization free energy of solvation -33.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds