Wall clock time and date at job start Tue Mar 31 2020 23:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50703 * 120.00380 * 2 1 4 4 C 1.52999 * 109.46916 * 120.00008 * 3 2 1 5 5 O 1.42905 * 109.46832 * 0.02562 * 3 2 1 6 6 C 1.52999 * 109.47210 * 240.00104 * 3 2 1 7 7 C 1.50706 * 109.46973 * 59.65878 * 6 3 2 8 8 O 1.21280 * 119.99807 * 356.89234 * 7 6 3 9 9 N 1.34776 * 119.99899 * 176.89410 * 7 6 3 10 10 C 1.46502 * 119.99870 * 179.97438 * 9 7 6 11 11 C 1.52993 * 109.46995 * 173.50953 * 10 9 7 12 12 H 1.08994 * 110.33451 * 57.49675 * 11 10 9 13 13 C 1.54911 * 110.37596 * 179.87355 * 11 10 9 14 14 C 1.55135 * 101.65659 * 155.89899 * 13 11 10 15 15 C 1.54322 * 103.02011 * 324.34614 * 14 13 11 16 16 N 1.47449 * 107.23325 * 22.28273 * 15 14 13 17 17 C 1.46895 * 111.00065 * 123.25589 * 16 15 14 18 18 C 1.50704 * 109.46951 * 56.30777 * 17 16 15 19 19 O 1.21297 * 120.00083 * 0.02562 * 18 17 16 20 20 N 1.34778 * 119.99959 * 179.97438 * 18 17 16 21 21 C 1.37107 * 119.99932 * 180.02562 * 20 18 17 22 22 H 1.07992 * 119.99692 * 359.97438 * 21 20 18 23 23 C 1.38940 * 119.99784 * 180.02562 * 21 20 18 24 24 N 1.31415 * 119.99938 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 120.00412 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.46923 * 89.99912 * 25 23 21 27 27 H 1.48498 * 109.47259 * 210.00223 * 25 23 21 28 28 H 1.48498 * 109.47303 * 330.00438 * 25 23 21 29 29 H 1.08003 * 120.00438 * 179.97438 * 1 2 3 30 30 H 1.08006 * 120.00093 * 359.97438 * 1 2 3 31 31 H 1.08004 * 119.99670 * 180.02562 * 2 1 3 32 32 H 1.09000 * 109.46819 * 184.77720 * 4 3 2 33 33 H 1.08998 * 109.47317 * 304.78112 * 4 3 2 34 34 H 1.08997 * 109.47420 * 64.78160 * 4 3 2 35 35 H 0.96694 * 113.99970 * 300.00276 * 5 3 2 36 36 H 1.08994 * 109.47346 * 299.65980 * 6 3 2 37 37 H 1.08995 * 109.46791 * 179.65661 * 6 3 2 38 38 H 0.96997 * 120.00137 * 359.97438 * 9 7 6 39 39 H 1.08998 * 109.47174 * 293.50998 * 10 9 7 40 40 H 1.09000 * 109.46680 * 53.51208 * 10 9 7 41 41 H 1.08999 * 110.98975 * 273.99214 * 13 11 10 42 42 H 1.09001 * 110.98908 * 37.80069 * 13 11 10 43 43 H 1.09001 * 110.70385 * 205.96526 * 14 13 11 44 44 H 1.08993 * 110.70743 * 82.72481 * 14 13 11 45 45 H 1.09004 * 109.88811 * 262.88202 * 15 14 13 46 46 H 1.08996 * 110.02907 * 141.76279 * 15 14 13 47 47 H 1.08994 * 109.47284 * 176.30657 * 17 16 15 48 48 H 1.08997 * 109.47508 * 296.30905 * 17 16 15 49 49 H 0.96992 * 120.00120 * 0.02562 * 20 18 17 50 50 H 0.96996 * 120.00177 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3860 1.2492 5 8 1.1349 2.3913 0.0006 6 6 2.9432 1.3861 -1.2492 7 6 2.0775 1.2979 -2.4797 8 8 0.8821 1.1252 -2.3690 9 7 2.6317 1.4110 -3.7030 10 6 1.7902 1.3247 -4.8992 11 6 2.6301 1.6436 -6.1376 12 1 3.4783 0.9626 -6.2056 13 6 1.7604 1.5552 -7.4165 14 6 2.5413 2.4758 -8.3908 15 6 3.0730 3.5903 -7.4652 16 7 3.0978 3.0456 -6.0953 17 6 4.4456 3.1336 -5.5180 18 6 4.9157 4.5650 -5.5556 19 8 4.1981 5.4271 -6.0174 20 7 6.1329 4.8874 -5.0751 21 6 6.5603 6.1897 -5.1088 22 1 5.9218 6.9570 -5.5208 23 6 7.8154 6.5220 -4.6140 24 7 8.2249 7.7703 -4.6458 25 14 8.9202 5.1946 -3.9021 26 1 9.7694 4.6268 -4.9799 27 1 9.7854 5.7831 -2.8484 28 1 8.0841 4.1184 -3.3122 29 1 -0.5401 -0.9353 -0.0004 30 1 -0.5400 0.9354 0.0004 31 1 1.8499 -0.9354 -0.0004 32 1 3.4228 2.3638 1.2931 33 1 2.3273 1.2433 2.1372 34 1 3.7060 0.6087 1.2075 35 1 0.5433 2.4034 -0.7641 36 1 3.6554 0.5611 -1.2463 37 1 3.4835 2.3327 -1.2523 38 1 3.5876 1.5495 -3.7915 39 1 1.3837 0.3171 -4.9855 40 1 0.9724 2.0410 -4.8205 41 1 1.7213 0.5328 -7.7922 42 1 0.7574 1.9410 -7.2340 43 1 1.8750 2.8890 -9.1481 44 1 3.3656 1.9347 -8.8551 45 1 2.4112 4.4554 -7.5084 46 1 4.0797 3.8783 -7.7679 47 1 4.4220 2.7860 -4.4852 48 1 5.1295 2.5114 -6.0952 49 1 6.7066 4.1982 -4.7055 50 1 9.1012 8.0022 -4.3007 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691076629.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:00 Heat of formation + Delta-G solvation = -114.196389 kcal Electronic energy + Delta-G solvation = -30742.985275 eV Core-core repulsion = 26576.956657 eV Total energy + Delta-G solvation = -4166.028618 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.40523 -40.81289 -39.42633 -38.53599 -36.05334 -35.53458 -33.92350 -33.80811 -33.13422 -32.36248 -31.03791 -28.99764 -28.46959 -26.23537 -25.39285 -23.34595 -22.48358 -21.51312 -21.28446 -21.13369 -20.45538 -20.10806 -18.24280 -17.92941 -17.75557 -17.33407 -17.02345 -16.75540 -16.49316 -16.31408 -15.77405 -15.73293 -15.29714 -15.26064 -14.79298 -14.58727 -14.53211 -14.20508 -13.89621 -13.68083 -13.55212 -13.37471 -13.14080 -13.03978 -12.98190 -12.88346 -12.76766 -12.61112 -12.41271 -12.28745 -12.17257 -12.01099 -11.95758 -11.92466 -11.57819 -11.46548 -11.05023 -10.92745 -10.38660 -10.23882 -10.06515 -9.92220 -9.25067 -8.40798 -6.02311 1.29790 1.36316 1.45709 1.50095 1.68301 1.93482 2.23963 2.25059 2.61360 3.10328 3.15151 3.34017 3.66110 3.71687 3.75263 3.84700 3.89812 4.02010 4.10197 4.24367 4.25926 4.33677 4.38637 4.42184 4.46045 4.60250 4.62865 4.70809 4.72120 4.82200 4.88874 4.95053 4.96424 5.02905 5.11073 5.15616 5.22905 5.29308 5.37819 5.48828 5.53004 5.74302 5.90067 5.97675 5.98334 6.12010 6.53224 6.59522 6.72020 6.88345 7.27672 7.38926 7.96260 8.76959 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008287 B = 0.003731 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3377.815917 B = 7503.240032 C =10176.625439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.185 4.185 3 C 0.166 3.834 4 C -0.134 4.134 5 O -0.579 6.579 6 C -0.168 4.168 7 C 0.510 3.490 8 O -0.567 6.567 9 N -0.719 5.719 10 C 0.141 3.859 11 C 0.060 3.940 12 H 0.087 0.913 13 C -0.110 4.110 14 C -0.136 4.136 15 C 0.062 3.938 16 N -0.524 5.524 17 C 0.050 3.950 18 C 0.448 3.552 19 O -0.607 6.607 20 N -0.589 5.589 21 C -0.327 4.327 22 H 0.052 0.948 23 C -0.017 4.017 24 N -0.936 5.936 25 Si 0.965 3.035 26 H -0.257 1.257 27 H -0.277 1.277 28 H -0.224 1.224 29 H 0.103 0.897 30 H 0.085 0.915 31 H 0.128 0.872 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.099 0.901 35 H 0.381 0.619 36 H 0.136 0.864 37 H 0.104 0.896 38 H 0.405 0.595 39 H 0.084 0.916 40 H 0.052 0.948 41 H 0.107 0.893 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.047 0.953 46 H 0.032 0.968 47 H 0.111 0.889 48 H 0.086 0.914 49 H 0.390 0.610 50 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.386 -25.541 3.835 26.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.203 4.203 3 C 0.125 3.875 4 C -0.192 4.192 5 O -0.390 6.390 6 C -0.208 4.208 7 C 0.298 3.702 8 O -0.448 6.448 9 N -0.372 5.372 10 C 0.017 3.983 11 C -0.048 4.048 12 H 0.105 0.895 13 C -0.148 4.148 14 C -0.174 4.174 15 C -0.065 4.065 16 N -0.250 5.250 17 C -0.081 4.081 18 C 0.235 3.765 19 O -0.491 6.491 20 N -0.231 5.231 21 C -0.457 4.457 22 H 0.070 0.930 23 C -0.215 4.215 24 N -0.577 5.577 25 Si 0.784 3.216 26 H -0.181 1.181 27 H -0.203 1.203 28 H -0.147 1.147 29 H 0.122 0.878 30 H 0.103 0.897 31 H 0.146 0.854 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.118 0.882 35 H 0.233 0.767 36 H 0.154 0.846 37 H 0.123 0.877 38 H 0.243 0.757 39 H 0.102 0.898 40 H 0.070 0.930 41 H 0.125 0.875 42 H 0.093 0.907 43 H 0.100 0.900 44 H 0.099 0.901 45 H 0.065 0.935 46 H 0.051 0.949 47 H 0.129 0.871 48 H 0.103 0.897 49 H 0.225 0.775 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.590 -24.485 4.494 26.334 hybrid contribution 1.398 0.219 -0.809 1.630 sum -7.191 -24.266 3.685 25.576 Atomic orbital electron populations 1.23664 0.96519 1.01457 0.98737 1.23418 0.96683 0.98338 1.01900 1.20099 0.88122 0.84777 0.94478 1.21759 0.98895 1.03516 0.94981 1.86446 1.51477 1.50124 1.50944 1.22502 0.99739 1.06868 0.91652 1.20976 0.88763 0.75095 0.85365 1.90634 1.16664 1.50481 1.86985 1.46146 1.12181 1.73165 1.05671 1.21317 0.93159 1.01226 0.82563 1.22986 0.98280 0.88231 0.95331 0.89543 1.22646 0.98493 1.01311 0.92372 1.22829 1.00508 0.96153 0.97927 1.22520 0.99611 0.97467 0.86947 1.63171 1.22263 1.18183 1.21372 1.22127 0.91220 0.92258 1.02529 1.20842 0.81753 0.91917 0.81941 1.90576 1.55946 1.52419 1.50124 1.41988 1.16108 1.08083 1.56903 1.18962 1.01472 0.84899 1.40331 0.92991 1.26155 0.98382 0.99611 0.97347 1.69814 1.21165 1.19818 1.46889 0.85374 0.78672 0.78536 0.78999 1.18140 1.20260 1.14725 0.87850 0.89719 0.85406 0.92013 0.92113 0.88250 0.76721 0.84586 0.87726 0.75739 0.89802 0.92953 0.87482 0.90745 0.90010 0.90113 0.93497 0.94950 0.87103 0.89677 0.77452 0.91186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.49 12.62 67.79 0.86 -2.64 16 2 C -0.19 -3.48 7.49 25.65 0.19 -3.28 16 3 C 0.17 3.28 1.08 -11.54 -0.01 3.26 16 4 C -0.13 -2.14 8.82 71.98 0.64 -1.50 16 5 O -0.58 -15.45 11.92 -132.63 -1.58 -17.03 16 6 C -0.17 -2.78 4.97 29.85 0.15 -2.63 16 7 C 0.51 10.83 7.33 87.66 0.64 11.48 16 8 O -0.57 -15.13 11.92 13.32 0.16 -14.97 16 9 N -0.72 -13.27 5.32 -463.06 -2.46 -15.74 16 10 C 0.14 2.70 5.38 86.38 0.46 3.16 16 11 C 0.06 1.07 2.64 45.38 0.12 1.19 16 12 H 0.09 1.16 7.73 -2.39 -0.02 1.14 16 13 C -0.11 -1.70 6.49 31.98 0.21 -1.49 16 14 C -0.14 -2.64 6.94 31.77 0.22 -2.41 16 15 C 0.06 1.89 5.15 86.65 0.45 2.34 16 16 N -0.52 -14.53 4.72 -865.17 -4.08 -18.61 16 17 C 0.05 1.40 5.02 85.56 0.43 1.83 16 18 C 0.45 19.39 7.11 87.66 0.62 20.01 16 19 O -0.61 -32.89 14.04 -3.08 -0.04 -32.94 16 20 N -0.59 -26.56 5.09 -306.98 -1.56 -28.12 16 21 C -0.33 -18.82 10.16 84.04 0.85 -17.96 16 22 H 0.05 3.61 7.39 -2.91 -0.02 3.58 16 23 C -0.02 -0.90 5.50 84.92 0.47 -0.43 16 24 N -0.94 -56.00 13.96 21.66 0.30 -55.70 16 25 Si 0.96 37.10 27.74 68.60 1.90 39.00 16 26 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 27 H -0.28 -10.74 7.11 99.48 0.71 -10.04 16 28 H -0.22 -6.92 6.52 99.48 0.65 -6.27 16 29 H 0.10 1.83 8.06 -2.91 -0.02 1.81 16 30 H 0.08 2.04 6.41 -2.91 -0.02 2.02 16 31 H 0.13 1.82 8.06 -2.91 -0.02 1.80 16 32 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.38 10.53 5.74 -74.06 -0.43 10.11 16 36 H 0.14 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.40 6.08 5.74 -92.71 -0.53 5.55 16 39 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.05 1.31 8.11 -2.39 -0.02 1.29 16 41 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.07 1.26 8.06 -2.39 -0.02 1.25 16 43 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.05 1.74 8.01 -2.38 -0.02 1.72 16 46 H 0.03 1.14 6.66 -2.39 -0.02 1.12 16 47 H 0.11 2.44 5.48 -2.39 -0.01 2.43 16 48 H 0.09 1.84 8.02 -2.39 -0.02 1.82 16 49 H 0.39 14.14 5.76 -92.71 -0.53 13.61 16 50 H 0.28 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -81.57 392.96 -1.66 -83.23 By element: Atomic # 1 Polarization: 50.54 SS G_CDS: -0.59 Total: 49.96 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: 6.29 Total: 10.91 kcal Atomic # 7 Polarization: -110.36 SS G_CDS: -7.80 Total: -118.17 kcal Atomic # 8 Polarization: -63.47 SS G_CDS: -1.47 Total: -64.94 kcal Atomic # 14 Polarization: 37.10 SS G_CDS: 1.90 Total: 39.00 kcal Total: -81.57 -1.66 -83.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691076629.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.963 kcal (2) G-P(sol) polarization free energy of solvation -81.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds