Wall clock time and date at job start Tue Mar 31 2020 23:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 119.99817 * 2 1 4 4 C 1.53004 * 109.46748 * 119.99716 * 3 2 1 5 5 O 1.42896 * 109.46998 * 359.97438 * 3 2 1 6 6 C 1.53001 * 109.46867 * 239.99363 * 3 2 1 7 7 C 1.50707 * 109.46989 * 55.71031 * 6 3 2 8 8 O 1.21279 * 119.99669 * 2.68846 * 7 6 3 9 9 N 1.34776 * 119.99874 * 182.68517 * 7 6 3 10 10 C 1.46496 * 119.99738 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.47019 * 187.26923 * 10 9 7 12 12 H 1.09002 * 110.72199 * 302.50466 * 11 10 9 13 13 C 1.54941 * 110.66499 * 179.40777 * 11 10 9 14 14 C 1.54594 * 102.91583 * 204.14867 * 13 11 10 15 15 C 1.53991 * 105.14256 * 21.95883 * 14 13 11 16 16 N 1.47896 * 107.05937 * 1.22244 * 15 14 13 17 17 C 1.46893 * 111.00111 * 214.15644 * 16 15 14 18 18 C 1.50707 * 109.47294 * 63.84133 * 17 16 15 19 19 O 1.21288 * 119.99407 * 353.26374 * 18 17 16 20 20 N 1.34777 * 119.99920 * 173.26412 * 18 17 16 21 21 C 1.37102 * 119.99609 * 179.97438 * 20 18 17 22 22 H 1.07992 * 119.99968 * 0.02562 * 21 20 18 23 23 C 1.38949 * 119.99835 * 179.72173 * 21 20 18 24 24 N 1.31412 * 120.00227 * 180.27283 * 23 21 20 25 25 Si 1.86800 * 119.99857 * 0.27994 * 23 21 20 26 26 H 1.48502 * 109.47374 * 90.00060 * 25 23 21 27 27 H 1.48509 * 109.47002 * 209.99669 * 25 23 21 28 28 H 1.48493 * 109.47531 * 329.99437 * 25 23 21 29 29 H 1.07993 * 119.99884 * 0.02562 * 1 2 3 30 30 H 1.07999 * 119.99812 * 180.02562 * 1 2 3 31 31 H 1.08007 * 120.00127 * 179.97438 * 2 1 3 32 32 H 1.09003 * 109.46620 * 184.86180 * 4 3 2 33 33 H 1.09000 * 109.47293 * 304.86494 * 4 3 2 34 34 H 1.09000 * 109.47303 * 64.87435 * 4 3 2 35 35 H 0.96696 * 114.00251 * 300.00236 * 5 3 2 36 36 H 1.08997 * 109.47193 * 295.71299 * 6 3 2 37 37 H 1.09001 * 109.47087 * 175.70989 * 6 3 2 38 38 H 0.97000 * 119.99919 * 359.97438 * 9 7 6 39 39 H 1.09000 * 109.47344 * 67.26690 * 10 9 7 40 40 H 1.09008 * 109.46975 * 307.26729 * 10 9 7 41 41 H 1.09001 * 110.72500 * 85.79655 * 13 11 10 42 42 H 1.08998 * 110.87951 * 322.57536 * 13 11 10 43 43 H 1.08999 * 110.31178 * 263.03980 * 14 13 11 44 44 H 1.09005 * 110.39379 * 140.91724 * 14 13 11 45 45 H 1.09005 * 109.91804 * 241.86938 * 15 14 13 46 46 H 1.09000 * 110.08098 * 120.66938 * 15 14 13 47 47 H 1.09000 * 109.47397 * 303.83497 * 17 16 15 48 48 H 1.09005 * 109.47225 * 183.84239 * 17 16 15 49 49 H 0.96997 * 119.99997 * 359.97438 * 20 18 17 50 50 H 0.96997 * 119.99987 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9430 1.3862 1.2493 5 8 1.1348 2.3912 -0.0006 6 6 2.9432 1.3861 -1.2492 7 6 2.0898 1.2006 -2.4774 8 8 0.8891 1.0701 -2.3674 9 7 2.6610 1.1798 -3.6980 10 6 1.8314 1.0001 -4.8919 11 6 2.7314 0.8325 -6.1179 12 1 3.3931 1.6913 -6.2309 13 6 1.8810 0.6253 -7.3963 14 6 2.8515 -0.1221 -8.3395 15 6 3.8979 -0.7665 -7.4116 16 7 3.5162 -0.4251 -6.0241 17 6 4.7051 -0.2421 -5.1810 18 6 5.5008 0.9351 -5.6833 19 8 5.1842 1.4842 -6.7174 20 7 6.5642 1.3777 -4.9833 21 6 7.2884 2.4483 -5.4406 22 1 7.0065 2.9372 -6.3613 23 6 8.3811 2.9083 -4.7160 24 7 9.0721 3.9378 -5.1515 25 14 8.8682 2.0630 -3.1230 26 1 9.8351 0.9745 -3.4157 27 1 9.4971 3.0515 -2.2103 28 1 7.6599 1.4912 -2.4764 29 1 -0.5399 0.9353 -0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8501 -0.9354 0.0004 32 1 3.4215 2.3646 1.2939 33 1 2.3274 1.2419 2.1371 34 1 3.7070 0.6099 1.2068 35 1 0.5438 2.4029 -0.7658 36 1 3.7007 0.6032 -1.2115 37 1 3.4296 2.3608 -1.2885 38 1 3.6213 1.2846 -3.7859 39 1 1.1936 1.8737 -5.0261 40 1 1.2107 0.1119 -4.7727 41 1 1.5886 1.5840 -7.8247 42 1 1.0030 0.0152 -7.1842 43 1 3.3317 0.5796 -9.0215 44 1 2.3195 -0.8902 -8.9009 45 1 4.8874 -0.3669 -7.6336 46 1 3.8971 -1.8488 -7.5413 47 1 5.3208 -1.1406 -5.2211 48 1 4.3960 -0.0592 -4.1518 49 1 6.8171 0.9388 -4.1561 50 1 9.8351 4.2586 -4.6459 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691076632.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:11 Heat of formation + Delta-G solvation = -80.522738 kcal Electronic energy + Delta-G solvation = -31534.618950 eV Core-core repulsion = 27370.050531 eV Total energy + Delta-G solvation = -4164.568419 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.50372 -39.78647 -37.84588 -37.29074 -34.56042 -34.14656 -33.00228 -32.20357 -31.71463 -31.47715 -29.98326 -28.10591 -26.93733 -24.86048 -23.95726 -22.45343 -21.10335 -20.57330 -20.21978 -19.65594 -19.47472 -18.39357 -17.24396 -16.99423 -16.48491 -16.04066 -15.77684 -15.41350 -15.22751 -14.83236 -14.73242 -14.53431 -14.30162 -14.08433 -13.58533 -13.45510 -13.03097 -12.82921 -12.70788 -12.61396 -12.47641 -12.21167 -12.09113 -11.99983 -11.79404 -11.69743 -11.37801 -11.31677 -11.13576 -11.05527 -10.94174 -10.84046 -10.75063 -10.33296 -10.17023 -10.15069 -9.95262 -9.61344 -9.42665 -9.17743 -8.87625 -8.35993 -7.76679 -6.49700 -4.01922 2.36273 2.65556 2.86218 2.93237 3.03286 3.21739 3.43117 3.93366 4.15893 4.19195 4.43895 4.58804 4.67302 4.73629 4.86858 4.93339 5.04097 5.14764 5.22983 5.24457 5.37056 5.41594 5.48690 5.53592 5.60183 5.66103 5.68331 5.70947 5.71636 5.73975 5.87349 5.89765 5.97882 6.02470 6.05511 6.21179 6.25647 6.42415 6.50242 6.56256 6.61459 6.81994 7.07043 7.15369 7.36139 7.49919 7.67171 7.94001 8.23423 8.36313 8.74211 9.21070 9.56279 10.62587 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.007942 B = 0.004658 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3524.521284 B = 6010.067346 C = 8828.993487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.188 4.188 3 C 0.180 3.820 4 C -0.136 4.136 5 O -0.561 6.561 6 C -0.174 4.174 7 C 0.514 3.486 8 O -0.543 6.543 9 N -0.724 5.724 10 C 0.135 3.865 11 C 0.027 3.973 12 H 0.109 0.891 13 C -0.107 4.107 14 C -0.119 4.119 15 C 0.034 3.966 16 N -0.488 5.488 17 C 0.019 3.981 18 C 0.405 3.595 19 O -0.568 6.568 20 N -0.579 5.579 21 C -0.311 4.311 22 H 0.120 0.880 23 C 0.046 3.954 24 N -0.872 5.872 25 Si 0.878 3.122 26 H -0.269 1.269 27 H -0.274 1.274 28 H -0.269 1.269 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.108 0.892 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.385 0.615 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.402 0.598 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.062 0.938 45 H 0.070 0.930 46 H 0.065 0.935 47 H 0.093 0.907 48 H 0.087 0.913 49 H 0.371 0.629 50 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.789 -9.281 7.048 16.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.207 4.207 3 C 0.138 3.862 4 C -0.193 4.193 5 O -0.371 6.371 6 C -0.214 4.214 7 C 0.301 3.699 8 O -0.422 6.422 9 N -0.378 5.378 10 C 0.011 3.989 11 C -0.081 4.081 12 H 0.127 0.873 13 C -0.145 4.145 14 C -0.157 4.157 15 C -0.094 4.094 16 N -0.211 5.211 17 C -0.114 4.114 18 C 0.191 3.809 19 O -0.454 6.454 20 N -0.217 5.217 21 C -0.440 4.440 22 H 0.138 0.862 23 C -0.159 4.159 24 N -0.511 5.511 25 Si 0.704 3.296 26 H -0.195 1.195 27 H -0.199 1.199 28 H -0.194 1.194 29 H 0.119 0.881 30 H 0.110 0.890 31 H 0.126 0.874 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.237 0.763 36 H 0.120 0.880 37 H 0.124 0.876 38 H 0.239 0.761 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.089 0.911 46 H 0.084 0.916 47 H 0.112 0.888 48 H 0.105 0.895 49 H 0.204 0.796 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.666 -9.131 7.233 17.208 hybrid contribution 1.522 -0.106 0.246 1.545 sum -11.144 -9.237 7.479 16.293 Atomic orbital electron populations 1.23590 0.95938 1.01537 0.97711 1.23235 0.96821 0.97778 1.02825 1.19771 0.88024 0.85248 0.93116 1.21721 0.98715 1.02827 0.96038 1.86428 1.50948 1.48802 1.50904 1.22512 0.99938 1.05534 0.93452 1.20565 0.88804 0.75849 0.84657 1.90623 1.14986 1.50083 1.86526 1.46412 1.11821 1.73307 1.06235 1.21376 0.93060 1.01443 0.82974 1.23529 0.95670 0.95318 0.93570 0.87346 1.22292 0.97568 1.00286 0.94395 1.22216 0.96479 0.99220 0.97773 1.22844 0.99844 0.99231 0.87439 1.65105 1.16454 1.29219 1.10345 1.22422 0.92562 0.97953 0.98431 1.20903 0.84184 0.88421 0.87380 1.90502 1.69469 1.60497 1.24894 1.42444 1.26764 1.29953 1.22497 1.19446 1.08323 1.06410 1.09826 0.86205 1.25086 0.96258 0.96245 0.98289 1.69615 1.18756 1.23628 1.39104 0.86699 0.79374 0.80118 0.83367 1.19460 1.19944 1.19410 0.88123 0.89040 0.87447 0.91469 0.91575 0.90996 0.76273 0.88013 0.87644 0.76063 0.91637 0.90722 0.91223 0.91348 0.91280 0.91937 0.91131 0.91622 0.88837 0.89505 0.79648 0.91350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 12.57 29.01 0.36 -1.38 16 2 C -0.19 -2.15 7.38 -36.03 -0.27 -2.41 16 3 C 0.18 2.06 1.08 -91.77 -0.10 1.96 16 4 C -0.14 -1.31 8.83 37.16 0.33 -0.99 16 5 O -0.56 -7.38 11.94 -51.36 -0.61 -7.99 16 6 C -0.17 -1.96 4.99 -27.88 -0.14 -2.10 16 7 C 0.51 6.86 7.32 -10.98 -0.08 6.78 16 8 O -0.54 -8.11 11.89 -10.57 -0.13 -8.23 16 9 N -0.72 -9.80 4.67 -60.29 -0.28 -10.09 16 10 C 0.14 1.86 5.41 -4.04 -0.02 1.84 16 11 C 0.03 0.40 2.19 -65.78 -0.14 0.26 16 12 H 0.11 2.01 5.02 -51.93 -0.26 1.74 16 13 C -0.11 -1.39 6.50 -24.87 -0.16 -1.55 16 14 C -0.12 -1.59 6.93 -25.38 -0.18 -1.77 16 15 C 0.03 0.51 6.01 -2.76 -0.02 0.49 16 16 N -0.49 -7.21 5.23 -224.05 -1.17 -8.39 16 17 C 0.02 0.29 5.32 -4.98 -0.03 0.26 16 18 C 0.40 7.96 6.33 -10.98 -0.07 7.89 16 19 O -0.57 -12.98 11.37 5.55 0.06 -12.92 16 20 N -0.58 -12.22 5.09 -10.96 -0.06 -12.27 16 21 C -0.31 -8.07 10.16 -14.93 -0.15 -8.22 16 22 H 0.12 3.61 7.39 -52.49 -0.39 3.22 16 23 C 0.05 1.17 5.50 -17.47 -0.10 1.07 16 24 N -0.87 -24.07 13.96 55.50 0.77 -23.29 16 25 Si 0.88 17.88 27.74 -169.99 -4.72 13.16 16 26 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 27 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 28 H -0.27 -4.80 6.51 56.52 0.37 -4.43 16 29 H 0.10 1.21 6.41 -52.49 -0.34 0.87 16 30 H 0.09 0.94 8.06 -52.49 -0.42 0.52 16 31 H 0.11 1.10 8.06 -52.48 -0.42 0.68 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.39 5.04 5.88 45.56 0.27 5.30 16 36 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.40 5.58 5.48 -40.82 -0.22 5.35 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.07 1.06 8.10 -51.92 -0.42 0.64 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.07 0.80 8.06 -51.93 -0.42 0.38 16 43 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.07 1.25 5.82 -51.93 -0.30 0.95 16 46 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 47 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 48 H 0.09 1.16 5.30 -51.93 -0.28 0.89 16 49 H 0.37 6.85 5.76 -40.82 -0.24 6.61 16 50 H 0.28 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 386.32 15.07 5.82 5.82 Total: -1.00 -29.69 386.32 -8.32 -38.01 By element: Atomic # 1 Polarization: 31.30 SS G_CDS: -7.26 Total: 24.05 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -0.76 Total: 2.14 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: -0.73 Total: -54.04 kcal Atomic # 8 Polarization: -28.46 SS G_CDS: -0.68 Total: -29.14 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -4.72 Total: 13.16 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -29.69 -8.32 -38.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691076632.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.516 kcal (2) G-P(sol) polarization free energy of solvation -29.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds