Wall clock time and date at job start Tue Mar 31 2020 23:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 119.99817 * 2 1 4 4 C 1.53004 * 109.46748 * 119.99716 * 3 2 1 5 5 O 1.42896 * 109.46998 * 359.97438 * 3 2 1 6 6 C 1.53001 * 109.46867 * 239.99363 * 3 2 1 7 7 C 1.50707 * 109.46989 * 55.71031 * 6 3 2 8 8 O 1.21279 * 119.99669 * 2.68846 * 7 6 3 9 9 N 1.34776 * 119.99874 * 182.68517 * 7 6 3 10 10 C 1.46496 * 119.99738 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.47019 * 187.26923 * 10 9 7 12 12 H 1.09002 * 110.72199 * 302.50466 * 11 10 9 13 13 C 1.54941 * 110.66499 * 179.40777 * 11 10 9 14 14 C 1.54594 * 102.91583 * 204.14867 * 13 11 10 15 15 C 1.53991 * 105.14256 * 21.95883 * 14 13 11 16 16 N 1.47896 * 107.05937 * 1.22244 * 15 14 13 17 17 C 1.46893 * 111.00111 * 214.15644 * 16 15 14 18 18 C 1.50707 * 109.47294 * 63.84133 * 17 16 15 19 19 O 1.21288 * 119.99407 * 353.26374 * 18 17 16 20 20 N 1.34777 * 119.99920 * 173.26412 * 18 17 16 21 21 C 1.37102 * 119.99609 * 179.97438 * 20 18 17 22 22 H 1.07992 * 119.99968 * 0.02562 * 21 20 18 23 23 C 1.38949 * 119.99835 * 179.72173 * 21 20 18 24 24 N 1.31412 * 120.00227 * 180.27283 * 23 21 20 25 25 Si 1.86800 * 119.99857 * 0.27994 * 23 21 20 26 26 H 1.48502 * 109.47374 * 90.00060 * 25 23 21 27 27 H 1.48509 * 109.47002 * 209.99669 * 25 23 21 28 28 H 1.48493 * 109.47531 * 329.99437 * 25 23 21 29 29 H 1.07993 * 119.99884 * 0.02562 * 1 2 3 30 30 H 1.07999 * 119.99812 * 180.02562 * 1 2 3 31 31 H 1.08007 * 120.00127 * 179.97438 * 2 1 3 32 32 H 1.09003 * 109.46620 * 184.86180 * 4 3 2 33 33 H 1.09000 * 109.47293 * 304.86494 * 4 3 2 34 34 H 1.09000 * 109.47303 * 64.87435 * 4 3 2 35 35 H 0.96696 * 114.00251 * 300.00236 * 5 3 2 36 36 H 1.08997 * 109.47193 * 295.71299 * 6 3 2 37 37 H 1.09001 * 109.47087 * 175.70989 * 6 3 2 38 38 H 0.97000 * 119.99919 * 359.97438 * 9 7 6 39 39 H 1.09000 * 109.47344 * 67.26690 * 10 9 7 40 40 H 1.09008 * 109.46975 * 307.26729 * 10 9 7 41 41 H 1.09001 * 110.72500 * 85.79655 * 13 11 10 42 42 H 1.08998 * 110.87951 * 322.57536 * 13 11 10 43 43 H 1.08999 * 110.31178 * 263.03980 * 14 13 11 44 44 H 1.09005 * 110.39379 * 140.91724 * 14 13 11 45 45 H 1.09005 * 109.91804 * 241.86938 * 15 14 13 46 46 H 1.09000 * 110.08098 * 120.66938 * 15 14 13 47 47 H 1.09000 * 109.47397 * 303.83497 * 17 16 15 48 48 H 1.09005 * 109.47225 * 183.84239 * 17 16 15 49 49 H 0.96997 * 119.99997 * 359.97438 * 20 18 17 50 50 H 0.96997 * 119.99987 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9430 1.3862 1.2493 5 8 1.1348 2.3912 -0.0006 6 6 2.9432 1.3861 -1.2492 7 6 2.0898 1.2006 -2.4774 8 8 0.8891 1.0701 -2.3674 9 7 2.6610 1.1798 -3.6980 10 6 1.8314 1.0001 -4.8919 11 6 2.7314 0.8325 -6.1179 12 1 3.3931 1.6913 -6.2309 13 6 1.8810 0.6253 -7.3963 14 6 2.8515 -0.1221 -8.3395 15 6 3.8979 -0.7665 -7.4116 16 7 3.5162 -0.4251 -6.0241 17 6 4.7051 -0.2421 -5.1810 18 6 5.5008 0.9351 -5.6833 19 8 5.1842 1.4842 -6.7174 20 7 6.5642 1.3777 -4.9833 21 6 7.2884 2.4483 -5.4406 22 1 7.0065 2.9372 -6.3613 23 6 8.3811 2.9083 -4.7160 24 7 9.0721 3.9378 -5.1515 25 14 8.8682 2.0630 -3.1230 26 1 9.8351 0.9745 -3.4157 27 1 9.4971 3.0515 -2.2103 28 1 7.6599 1.4912 -2.4764 29 1 -0.5399 0.9353 -0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8501 -0.9354 0.0004 32 1 3.4215 2.3646 1.2939 33 1 2.3274 1.2419 2.1371 34 1 3.7070 0.6099 1.2068 35 1 0.5438 2.4029 -0.7658 36 1 3.7007 0.6032 -1.2115 37 1 3.4296 2.3608 -1.2885 38 1 3.6213 1.2846 -3.7859 39 1 1.1936 1.8737 -5.0261 40 1 1.2107 0.1119 -4.7727 41 1 1.5886 1.5840 -7.8247 42 1 1.0030 0.0152 -7.1842 43 1 3.3317 0.5796 -9.0215 44 1 2.3195 -0.8902 -8.9009 45 1 4.8874 -0.3669 -7.6336 46 1 3.8971 -1.8488 -7.5413 47 1 5.3208 -1.1406 -5.2211 48 1 4.3960 -0.0592 -4.1518 49 1 6.8171 0.9388 -4.1561 50 1 9.8351 4.2586 -4.6459 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691076632.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:10 Heat of formation + Delta-G solvation = -103.912118 kcal Electronic energy + Delta-G solvation = -31535.633190 eV Core-core repulsion = 27370.050531 eV Total energy + Delta-G solvation = -4165.582659 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.70312 -40.97996 -39.08629 -38.48858 -36.02330 -35.57660 -33.91499 -33.85809 -33.19054 -32.36780 -31.02301 -28.99943 -28.41601 -26.20988 -25.36399 -23.32439 -22.21410 -21.88072 -21.35231 -21.17258 -20.49382 -20.04260 -18.40653 -18.02388 -17.61789 -17.25188 -17.02182 -16.80239 -16.45107 -16.19088 -15.95936 -15.61569 -15.48101 -15.21306 -15.09110 -14.63112 -14.44670 -14.29870 -13.90060 -13.62314 -13.43853 -13.31399 -13.13195 -13.01258 -12.88819 -12.79424 -12.61207 -12.53467 -12.40613 -12.23536 -12.11482 -12.00072 -11.98525 -11.92809 -11.63851 -11.21606 -11.05412 -10.97535 -10.92686 -10.21251 -10.14569 -9.89326 -9.18876 -8.42442 -6.03273 1.29257 1.35240 1.44848 1.50680 1.64271 1.85447 2.18704 2.22569 2.88129 2.95401 3.14394 3.33602 3.62239 3.75366 3.77879 3.84296 3.89751 4.03683 4.15475 4.29841 4.35898 4.38898 4.42472 4.46296 4.52597 4.58809 4.64165 4.70508 4.76420 4.80387 4.89519 4.95555 4.96330 5.08047 5.13035 5.16204 5.24720 5.29602 5.39024 5.42694 5.51089 5.75958 5.85556 5.86511 5.97787 5.99737 6.44006 6.54532 6.71869 6.85767 7.19976 7.35589 7.89262 8.74508 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.007942 B = 0.004658 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3524.521284 B = 6010.067346 C = 8828.993487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.189 4.189 3 C 0.172 3.828 4 C -0.135 4.135 5 O -0.575 6.575 6 C -0.172 4.172 7 C 0.512 3.488 8 O -0.560 6.560 9 N -0.725 5.725 10 C 0.144 3.856 11 C 0.030 3.970 12 H 0.070 0.930 13 C -0.104 4.104 14 C -0.118 4.118 15 C 0.032 3.968 16 N -0.477 5.477 17 C 0.027 3.973 18 C 0.415 3.585 19 O -0.601 6.601 20 N -0.582 5.582 21 C -0.325 4.325 22 H 0.056 0.944 23 C -0.012 4.012 24 N -0.932 5.932 25 Si 0.956 3.044 26 H -0.261 1.261 27 H -0.279 1.279 28 H -0.220 1.220 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.123 0.877 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.095 0.905 35 H 0.382 0.618 36 H 0.129 0.871 37 H 0.107 0.893 38 H 0.400 0.600 39 H 0.063 0.937 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.090 0.910 43 H 0.047 0.953 44 H 0.090 0.910 45 H 0.035 0.965 46 H 0.090 0.910 47 H 0.121 0.879 48 H 0.114 0.886 49 H 0.389 0.611 50 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.458 -12.448 9.452 19.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.207 4.207 3 C 0.131 3.869 4 C -0.192 4.192 5 O -0.385 6.385 6 C -0.212 4.212 7 C 0.300 3.700 8 O -0.440 6.440 9 N -0.379 5.379 10 C 0.020 3.980 11 C -0.079 4.079 12 H 0.087 0.913 13 C -0.143 4.143 14 C -0.156 4.156 15 C -0.096 4.096 16 N -0.200 5.200 17 C -0.105 4.105 18 C 0.202 3.798 19 O -0.487 6.487 20 N -0.223 5.223 21 C -0.455 4.455 22 H 0.074 0.926 23 C -0.211 4.211 24 N -0.572 5.572 25 Si 0.776 3.224 26 H -0.186 1.186 27 H -0.204 1.204 28 H -0.143 1.143 29 H 0.108 0.892 30 H 0.120 0.880 31 H 0.141 0.859 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.114 0.886 35 H 0.234 0.766 36 H 0.147 0.853 37 H 0.125 0.875 38 H 0.238 0.762 39 H 0.081 0.919 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.108 0.892 43 H 0.066 0.934 44 H 0.108 0.892 45 H 0.054 0.946 46 H 0.108 0.892 47 H 0.139 0.861 48 H 0.131 0.869 49 H 0.225 0.775 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.370 -12.320 9.634 20.575 hybrid contribution 1.611 0.906 -0.673 1.967 sum -11.759 -11.414 8.960 18.677 Atomic orbital electron populations 1.23660 0.96359 1.01566 0.98455 1.23407 0.96812 0.98331 1.02143 1.20018 0.87997 0.84827 0.94066 1.21763 0.98873 1.03584 0.94970 1.86425 1.51368 1.49819 1.50869 1.22564 1.00031 1.06605 0.91959 1.20975 0.88825 0.75167 0.85011 1.90625 1.15888 1.50761 1.86743 1.46433 1.11623 1.73486 1.06348 1.21251 0.92716 1.01455 0.82616 1.23386 0.95521 0.93830 0.95155 0.91280 1.22331 0.97877 1.00796 0.93293 1.22222 0.96320 0.99523 0.97527 1.22883 0.98371 1.00538 0.87772 1.65186 1.15904 1.28599 1.10285 1.22566 0.92156 0.96333 0.99474 1.21962 0.83157 0.88467 0.86169 1.90521 1.70041 1.61623 1.26519 1.42222 1.27124 1.29371 1.23617 1.18966 1.09861 1.08173 1.08455 0.92576 1.26098 0.95468 0.96706 1.02824 1.69803 1.19803 1.26132 1.41506 0.85495 0.80737 0.78820 0.77376 1.18572 1.20412 1.14250 0.89237 0.88043 0.85870 0.91702 0.91784 0.88646 0.76631 0.85302 0.87457 0.76250 0.91883 0.90365 0.91164 0.89191 0.93366 0.89161 0.94627 0.89201 0.86118 0.86882 0.77544 0.91221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.53 12.57 67.78 0.85 -2.68 16 2 C -0.19 -3.81 7.38 25.64 0.19 -3.62 16 3 C 0.17 3.51 1.08 -11.54 -0.01 3.50 16 4 C -0.13 -2.20 8.83 71.98 0.64 -1.57 16 5 O -0.57 -14.51 11.94 -133.56 -1.59 -16.10 16 6 C -0.17 -3.31 4.99 29.85 0.15 -3.16 16 7 C 0.51 12.45 7.32 87.66 0.64 13.09 16 8 O -0.56 -15.75 11.89 12.40 0.15 -15.61 16 9 N -0.73 -18.05 4.67 -463.05 -2.16 -20.21 16 10 C 0.14 3.71 5.41 86.38 0.47 4.18 16 11 C 0.03 0.85 2.19 45.27 0.10 0.95 16 12 H 0.07 2.60 5.02 -2.39 -0.01 2.59 16 13 C -0.10 -2.57 6.50 31.80 0.21 -2.37 16 14 C -0.12 -3.01 6.93 31.47 0.22 -2.79 16 15 C 0.03 0.90 6.01 86.45 0.52 1.42 16 16 N -0.48 -12.98 5.23 -862.77 -4.51 -17.49 16 17 C 0.03 0.75 5.32 85.56 0.46 1.20 16 18 C 0.42 16.15 6.33 87.66 0.56 16.71 16 19 O -0.60 -28.52 11.37 -3.05 -0.03 -28.55 16 20 N -0.58 -24.21 5.09 -306.98 -1.56 -25.77 16 21 C -0.33 -17.52 10.16 84.04 0.85 -16.67 16 22 H 0.06 3.67 7.39 -2.91 -0.02 3.65 16 23 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 24 N -0.93 -53.76 13.96 21.66 0.30 -53.46 16 25 Si 0.96 35.52 27.74 68.60 1.90 37.43 16 26 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 27 H -0.28 -10.55 7.11 99.48 0.71 -9.84 16 28 H -0.22 -6.37 6.51 99.48 0.65 -5.72 16 29 H 0.09 2.10 6.41 -2.91 -0.02 2.09 16 30 H 0.10 1.92 8.06 -2.91 -0.02 1.89 16 31 H 0.12 2.07 8.06 -2.91 -0.02 2.05 16 32 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.38 9.84 5.88 -74.06 -0.44 9.40 16 36 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.40 10.13 5.48 -92.71 -0.51 9.63 16 39 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.08 2.01 8.10 -2.38 -0.02 1.99 16 41 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.09 1.85 8.06 -2.39 -0.02 1.83 16 43 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 45 H 0.04 1.26 5.82 -2.38 -0.01 1.24 16 46 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 47 H 0.12 2.76 8.14 -2.39 -0.02 2.74 16 48 H 0.11 2.56 5.30 -2.38 -0.01 2.55 16 49 H 0.39 13.16 5.76 -92.71 -0.53 12.62 16 50 H 0.28 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -70.31 386.32 -1.78 -72.09 By element: Atomic # 1 Polarization: 60.20 SS G_CDS: -0.56 Total: 59.64 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: 6.30 Total: 8.04 kcal Atomic # 7 Polarization: -108.99 SS G_CDS: -7.93 Total: -116.93 kcal Atomic # 8 Polarization: -58.78 SS G_CDS: -1.48 Total: -60.26 kcal Atomic # 14 Polarization: 35.52 SS G_CDS: 1.90 Total: 37.43 kcal Total: -70.31 -1.78 -72.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691076632.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.824 kcal (2) G-P(sol) polarization free energy of solvation -70.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds