Wall clock time and date at job start Tue Mar 31 2020 23:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47344 * 2 1 4 4 H 1.08992 * 109.49007 * 54.97134 * 3 2 1 5 5 C 1.53096 * 109.48176 * 175.00225 * 3 2 1 6 6 C 1.53178 * 109.16278 * 177.59078 * 5 3 2 7 7 H 1.09000 * 109.60958 * 183.10976 * 6 5 3 8 8 C 1.50696 * 109.54297 * 62.88700 * 6 5 3 9 9 O 1.21280 * 120.00204 * 0.43776 * 8 6 5 10 10 N 1.34771 * 119.99854 * 180.44365 * 8 6 5 11 11 C 1.46503 * 120.00187 * 179.97438 * 10 8 6 12 12 C 1.53934 * 113.73739 * 251.72895 * 11 10 8 13 13 N 1.47966 * 86.18071 * 221.91984 * 12 11 10 14 14 C 1.46896 * 110.99865 * 137.58267 * 13 12 11 15 15 C 1.50700 * 109.47248 * 70.63817 * 14 13 12 16 16 O 1.21293 * 119.99939 * 0.02562 * 15 14 13 17 17 N 1.34775 * 120.00215 * 179.97438 * 15 14 13 18 18 C 1.37092 * 120.00228 * 180.02562 * 17 15 14 19 19 H 1.08001 * 120.00217 * 359.97438 * 18 17 15 20 20 C 1.38944 * 120.00156 * 180.02562 * 18 17 15 21 21 N 1.31420 * 120.00267 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 120.00090 * 359.97438 * 20 18 17 23 23 H 1.48506 * 109.47161 * 90.00178 * 22 20 18 24 24 H 1.48498 * 109.47451 * 210.00058 * 22 20 18 25 25 H 1.48500 * 109.47508 * 330.00649 * 22 20 18 26 26 C 1.47957 * 90.76199 * 24.68907 * 13 12 11 27 27 C 1.53178 * 109.03511 * 303.01594 * 6 5 3 28 28 C 1.53093 * 109.16255 * 56.98447 * 27 6 5 29 29 O 1.42904 * 109.42351 * 302.38111 * 28 27 6 30 30 H 1.08991 * 109.47407 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46879 * 300.00137 * 1 2 3 32 32 H 1.09005 * 109.46989 * 59.99382 * 1 2 3 33 33 H 1.09002 * 109.46879 * 239.99863 * 2 1 3 34 34 H 1.08995 * 109.47340 * 120.00213 * 2 1 3 35 35 H 1.08999 * 109.52155 * 57.68287 * 5 3 2 36 36 H 1.08996 * 109.57060 * 297.52545 * 5 3 2 37 37 H 0.97002 * 120.00534 * 0.02562 * 10 8 6 38 38 H 1.09000 * 112.93791 * 23.43965 * 11 10 8 39 39 H 1.08995 * 113.75919 * 336.23600 * 12 11 10 40 40 H 1.08999 * 113.75877 * 107.60223 * 12 11 10 41 41 H 1.09003 * 109.46837 * 190.63990 * 14 13 12 42 42 H 1.08998 * 109.47197 * 310.63681 * 14 13 12 43 43 H 0.97002 * 119.99624 * 0.02562 * 17 15 14 44 44 H 0.97002 * 119.99988 * 179.97438 * 21 20 18 45 45 H 1.09007 * 113.76094 * 220.99204 * 26 13 12 46 46 H 1.09006 * 113.76036 * 89.62913 * 26 13 12 47 47 H 1.09000 * 109.52619 * 297.07706 * 27 6 5 48 48 H 1.08998 * 109.51869 * 176.88944 * 27 6 5 49 49 H 1.09002 * 109.48198 * 62.37219 * 28 27 6 50 50 H 1.08999 * 109.48029 * 182.39833 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9819 0.8414 5 6 3.5658 1.4445 0.1257 6 6 4.0735 2.8885 0.0644 7 1 5.1629 2.8949 0.0978 8 6 3.5285 3.6645 1.2356 9 8 2.8115 3.1162 2.0456 10 7 3.8378 4.9680 1.3829 11 6 3.3076 5.7227 2.5211 12 6 2.2187 6.7405 2.1366 13 7 2.8880 7.6637 3.0794 14 6 2.9741 9.0184 2.5180 15 6 1.5997 9.6355 2.4818 16 8 0.6427 9.0085 2.8847 17 7 1.4340 10.8843 2.0029 18 6 0.1838 11.4458 1.9705 19 1 -0.6685 10.8873 2.3284 20 6 0.0129 12.7331 1.4762 21 7 -1.1857 13.2712 1.4447 22 14 1.4868 13.6989 0.8565 23 1 1.6778 13.4351 -0.5925 24 1 1.2527 15.1498 1.0687 25 1 2.7018 13.2795 1.6002 26 6 4.1668 6.9384 2.9127 27 6 3.5970 3.5305 -1.2422 28 6 2.0701 3.4479 -1.3151 29 8 1.6631 2.0812 -1.2218 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5140 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.9996 0.8708 -0.6933 36 1 3.8544 0.9971 1.0768 37 1 4.4110 5.4067 0.7348 38 1 3.0379 5.0864 3.3640 39 1 2.2671 7.0636 1.0967 40 1 1.2153 6.4481 2.4460 41 1 3.6300 9.6282 3.1393 42 1 3.3762 8.9675 1.5062 43 1 2.1994 11.3858 1.6811 44 1 -1.3048 14.1700 1.0999 45 1 4.7200 6.8041 3.8424 46 1 4.7851 7.3194 2.0998 47 1 4.0314 2.9989 -2.0888 48 1 3.9070 4.5751 -1.2688 49 1 1.6356 4.0137 -0.4909 50 1 1.7283 3.8650 -2.2623 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692253569.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:16 Heat of formation + Delta-G solvation = -115.707155 kcal Electronic energy + Delta-G solvation = -30238.550351 eV Core-core repulsion = 26072.456221 eV Total energy + Delta-G solvation = -4166.094130 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.98126 -41.12322 -39.81587 -38.99440 -36.04359 -35.46667 -34.72110 -34.55177 -33.78023 -31.23839 -30.70957 -27.65490 -27.13066 -26.70844 -25.09380 -24.51031 -23.14307 -22.14882 -21.39191 -21.29315 -20.45618 -20.22255 -17.93368 -17.84076 -17.68057 -17.40567 -17.18426 -16.77637 -16.63738 -16.24412 -15.87215 -15.69745 -15.32729 -15.21658 -14.90801 -14.71477 -14.58531 -14.49521 -14.17670 -14.01987 -13.80436 -13.70731 -13.35375 -13.24321 -13.13909 -12.89824 -12.75357 -12.57054 -12.43601 -12.39784 -12.09889 -11.99019 -11.87459 -11.81821 -11.63216 -11.52245 -11.37808 -10.80218 -10.45741 -10.27495 -10.24820 -10.12357 -9.74978 -8.42865 -6.04625 1.28880 1.34751 1.44343 1.56133 1.93313 2.04871 2.22212 2.70124 2.85011 3.06728 3.13250 3.48830 3.53866 3.67849 3.77361 3.80777 3.92747 4.03036 4.07247 4.17693 4.23474 4.26662 4.33638 4.37406 4.41773 4.47183 4.50451 4.60090 4.68787 4.68967 4.80781 4.83108 4.89257 4.90339 4.96562 5.01333 5.06302 5.10389 5.15953 5.28541 5.31617 5.38727 5.45544 5.51998 5.87018 5.97563 6.31251 6.51880 6.57423 6.86266 7.23777 7.37111 7.95203 8.75042 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016170 B = 0.002285 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.186892 B =12250.074842 C =12770.481376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.112 4.112 3 C 0.074 3.926 4 H 0.049 0.951 5 C -0.126 4.126 6 C -0.106 4.106 7 H 0.139 0.861 8 C 0.511 3.489 9 O -0.576 6.576 10 N -0.704 5.704 11 C 0.128 3.872 12 C 0.003 3.997 13 N -0.485 5.485 14 C 0.023 3.977 15 C 0.447 3.553 16 O -0.614 6.614 17 N -0.590 5.590 18 C -0.330 4.330 19 H 0.050 0.950 20 C -0.018 4.018 21 N -0.936 5.936 22 Si 0.968 3.032 23 H -0.255 1.255 24 H -0.276 1.276 25 H -0.228 1.228 26 C 0.014 3.986 27 C -0.138 4.138 28 C 0.049 3.951 29 O -0.394 6.394 30 H 0.068 0.932 31 H 0.038 0.962 32 H 0.049 0.951 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.418 0.582 38 H 0.100 0.900 39 H 0.077 0.923 40 H 0.049 0.951 41 H 0.125 0.875 42 H 0.097 0.903 43 H 0.391 0.609 44 H 0.279 0.721 45 H 0.113 0.887 46 H 0.111 0.889 47 H 0.104 0.896 48 H 0.100 0.900 49 H 0.022 0.978 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.911 -21.208 -8.696 32.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.149 4.149 3 C 0.017 3.983 4 H 0.067 0.933 5 C -0.164 4.164 6 C -0.127 4.127 7 H 0.156 0.844 8 C 0.299 3.701 9 O -0.455 6.455 10 N -0.357 5.357 11 C 0.022 3.978 12 C -0.127 4.127 13 N -0.209 5.209 14 C -0.108 4.108 15 C 0.235 3.765 16 O -0.498 6.498 17 N -0.232 5.232 18 C -0.459 4.459 19 H 0.068 0.932 20 C -0.216 4.216 21 N -0.577 5.577 22 Si 0.788 3.212 23 H -0.179 1.179 24 H -0.201 1.201 25 H -0.152 1.152 26 C -0.115 4.115 27 C -0.175 4.175 28 C -0.028 4.028 29 O -0.313 6.313 30 H 0.087 0.913 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.115 0.885 36 H 0.094 0.906 37 H 0.256 0.744 38 H 0.118 0.882 39 H 0.095 0.905 40 H 0.068 0.932 41 H 0.142 0.858 42 H 0.114 0.886 43 H 0.227 0.773 44 H 0.089 0.911 45 H 0.131 0.869 46 H 0.129 0.871 47 H 0.123 0.877 48 H 0.118 0.882 49 H 0.040 0.960 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 21.257 -21.819 -7.377 31.342 hybrid contribution -0.027 1.471 -0.803 1.676 sum 21.229 -20.348 -8.180 30.523 Atomic orbital electron populations 1.21705 0.95966 1.01934 1.01116 1.21535 0.96255 0.93903 1.03212 1.22419 0.94879 0.94568 0.86446 0.93292 1.21988 0.95392 0.95241 1.03777 1.21521 1.03848 0.95079 0.92260 0.84353 1.21308 0.79557 0.82318 0.86886 1.90683 1.38608 1.70063 1.46191 1.45904 1.51853 1.10127 1.27775 1.22709 0.93750 0.91457 0.89927 1.24240 0.99097 0.93383 0.95975 1.68340 1.10525 0.99858 1.42146 1.22467 0.93247 0.93040 1.02081 1.20969 0.92083 0.82079 0.81407 1.90569 1.44322 1.63084 1.51813 1.42016 1.08264 1.14566 1.58356 1.18970 0.85842 0.99441 1.41644 0.93156 1.26190 1.01181 0.97252 0.96984 1.69821 1.24442 1.16835 1.46553 0.85323 0.78141 0.77900 0.79866 1.17881 1.20122 1.15152 1.24489 0.92393 0.90518 1.04086 1.22198 0.95347 1.03233 0.96751 1.22700 0.95399 0.82802 1.01884 1.87881 1.79493 1.24910 1.39055 0.91269 0.94256 0.93228 0.90317 0.89845 0.88455 0.90591 0.74377 0.88176 0.90516 0.93193 0.85755 0.88571 0.77346 0.91121 0.86879 0.87092 0.87728 0.88170 0.96001 0.87548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 9.81 71.98 0.71 -2.22 16 2 C -0.11 -1.99 5.64 30.59 0.17 -1.82 16 3 C 0.07 1.57 2.35 30.63 0.07 1.64 16 4 H 0.05 1.40 5.82 -2.39 -0.01 1.39 16 5 C -0.13 -1.88 4.56 30.69 0.14 -1.74 16 6 C -0.11 -1.27 3.04 -11.42 -0.03 -1.31 16 7 H 0.14 0.72 8.14 -2.39 -0.02 0.71 16 8 C 0.51 9.94 5.82 87.66 0.51 10.45 16 9 O -0.58 -16.88 13.45 -3.03 -0.04 -16.92 16 10 N -0.70 -10.78 5.24 -446.13 -2.34 -13.12 16 11 C 0.13 2.79 4.43 46.55 0.21 2.99 16 12 C 0.00 0.10 6.56 86.40 0.57 0.67 16 13 N -0.49 -14.10 5.95 -912.84 -5.43 -19.53 16 14 C 0.02 0.67 5.31 85.56 0.45 1.12 16 15 C 0.45 20.16 7.59 87.66 0.67 20.83 16 16 O -0.61 -34.94 15.13 -3.07 -0.05 -34.99 16 17 N -0.59 -27.58 5.09 -306.99 -1.56 -29.15 16 18 C -0.33 -19.45 10.16 84.04 0.85 -18.60 16 19 H 0.05 3.58 7.39 -2.91 -0.02 3.56 16 20 C -0.02 -0.98 5.50 84.92 0.47 -0.52 16 21 N -0.94 -56.79 13.96 21.66 0.30 -56.48 16 22 Si 0.97 38.05 27.74 68.60 1.90 39.95 16 23 H -0.25 -9.35 7.11 99.48 0.71 -8.64 16 24 H -0.28 -10.85 7.11 99.48 0.71 -10.14 16 25 H -0.23 -7.40 6.52 99.48 0.65 -6.75 16 26 C 0.01 0.23 7.73 86.41 0.67 0.90 16 27 C -0.14 -1.41 5.57 30.68 0.17 -1.23 16 28 C 0.05 0.90 6.61 72.01 0.48 1.38 16 29 O -0.39 -8.85 9.95 -148.98 -1.48 -10.33 16 30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.05 1.07 7.82 -2.38 -0.02 1.05 16 33 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.08 1.21 8.02 -2.39 -0.02 1.19 16 37 H 0.42 3.16 8.12 -92.71 -0.75 2.41 16 38 H 0.10 2.73 7.46 -2.39 -0.02 2.71 16 39 H 0.08 2.12 7.78 -2.39 -0.02 2.10 16 40 H 0.05 1.97 8.09 -2.39 -0.02 1.95 16 41 H 0.12 2.88 8.14 -2.39 -0.02 2.86 16 42 H 0.10 2.01 7.69 -2.39 -0.02 1.99 16 43 H 0.39 14.74 5.76 -92.71 -0.53 14.21 16 44 H 0.28 15.44 8.31 -92.71 -0.77 14.66 16 45 H 0.11 1.63 8.14 -2.38 -0.02 1.61 16 46 H 0.11 1.05 7.77 -2.38 -0.02 1.03 16 47 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 48 H 0.10 0.59 7.49 -2.39 -0.02 0.57 16 49 H 0.02 0.52 7.38 -2.39 -0.02 0.50 16 50 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -88.29 394.24 -2.99 -91.28 By element: Atomic # 1 Polarization: 37.15 SS G_CDS: -0.39 Total: 36.76 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: 6.09 Total: 12.53 kcal Atomic # 7 Polarization: -109.25 SS G_CDS: -9.03 Total: -118.28 kcal Atomic # 8 Polarization: -60.68 SS G_CDS: -1.57 Total: -62.25 kcal Atomic # 14 Polarization: 38.05 SS G_CDS: 1.90 Total: 39.95 kcal Total: -88.29 -2.99 -91.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692253569.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.424 kcal (2) G-P(sol) polarization free energy of solvation -88.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds