Wall clock time and date at job start Tue Mar 31 2020 22:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99597 * 2 1 4 4 C 1.52997 * 109.47130 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47505 * 59.99858 * 4 3 2 6 6 C 1.53004 * 109.46924 * 300.00090 * 4 3 2 7 7 C 1.50701 * 109.47345 * 180.02562 * 4 3 2 8 8 O 1.21284 * 119.99695 * 0.95247 * 7 4 3 9 9 N 1.34776 * 119.99951 * 180.94910 * 7 4 3 10 10 C 1.47858 * 126.93112 * 354.93407 * 9 7 4 11 11 C 1.56020 * 105.11536 * 181.95749 * 10 9 7 12 12 H 1.08999 * 116.25876 * 158.85489 * 11 10 9 13 13 C 1.58886 * 100.02063 * 32.52563 * 11 10 9 14 14 C 1.49289 * 126.92327 * 174.96090 * 9 7 4 15 15 H 1.09002 * 116.12545 * 15.98287 * 14 9 7 16 16 C 1.56012 * 104.12631 * 246.86928 * 14 9 7 17 17 N 1.48291 * 105.15571 * 287.90600 * 16 14 9 18 18 C 1.46898 * 110.99804 * 122.59991 * 17 16 14 19 19 C 1.50698 * 109.47349 * 76.71603 * 18 17 16 20 20 O 1.21288 * 119.99999 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99841 * 180.02562 * 19 18 17 22 22 C 1.37097 * 119.99654 * 180.02562 * 21 19 18 23 23 H 1.07997 * 120.00167 * 359.97438 * 22 21 19 24 24 C 1.38951 * 119.99955 * 180.02562 * 22 21 19 25 25 N 1.31413 * 120.00333 * 179.97438 * 24 22 21 26 26 Si 1.86802 * 119.99973 * 359.97438 * 24 22 21 27 27 H 1.48507 * 109.47074 * 90.00153 * 26 24 22 28 28 H 1.48491 * 109.47453 * 210.00433 * 26 24 22 29 29 H 1.48502 * 109.47138 * 330.00668 * 26 24 22 30 30 H 1.09000 * 109.47292 * 60.00468 * 1 2 3 31 31 H 1.09009 * 109.46776 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47328 * 299.99585 * 1 2 3 33 33 H 1.09001 * 109.47459 * 60.00061 * 3 2 1 34 34 H 1.09003 * 109.47536 * 300.00099 * 3 2 1 35 35 H 1.08997 * 109.47713 * 188.15291 * 5 4 3 36 36 H 1.09006 * 109.47256 * 308.15648 * 5 4 3 37 37 H 1.09008 * 109.46899 * 68.15036 * 5 4 3 38 38 H 1.09003 * 109.47031 * 293.57078 * 6 4 3 39 39 H 1.08998 * 109.47294 * 53.57393 * 6 4 3 40 40 H 1.09003 * 109.46750 * 173.57693 * 6 4 3 41 41 H 1.09001 * 110.31420 * 300.86928 * 10 9 7 42 42 H 1.09002 * 110.31100 * 62.94674 * 10 9 7 43 43 H 1.09003 * 113.27538 * 192.42989 * 13 11 10 44 44 H 1.09001 * 112.05706 * 64.49548 * 13 11 10 45 45 H 1.09000 * 110.32368 * 46.85556 * 16 14 9 46 46 H 1.09000 * 110.31708 * 168.95987 * 16 14 9 47 47 H 1.09000 * 109.46642 * 196.71909 * 18 17 16 48 48 H 1.08998 * 109.46820 * 316.71406 * 18 17 16 49 49 H 0.96996 * 120.00170 * 359.97438 * 21 19 18 50 50 H 0.96993 * 119.99886 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 6 3.9864 0.4258 -1.2501 6 6 3.9873 0.4253 1.2483 7 6 4.1482 2.5616 0.0000 8 8 3.4354 3.5426 0.0183 9 7 5.4885 2.7025 -0.0198 10 6 6.4965 1.6239 0.0610 11 6 7.8754 2.3537 0.0451 12 1 8.7212 1.7953 0.4463 13 6 7.4873 3.6947 0.8037 14 6 6.2544 3.9794 -0.1271 15 1 5.6949 4.8931 0.0734 16 6 6.9512 3.8896 -1.5201 17 7 8.0194 2.8744 -1.3545 18 6 7.8569 1.7774 -2.3178 19 6 8.3241 2.2294 -3.6774 20 8 8.7509 3.3546 -3.8289 21 7 8.2676 1.3834 -4.7250 22 6 8.6931 1.7945 -5.9618 23 1 9.0731 2.7963 -6.0966 24 6 8.6344 0.9224 -7.0420 25 7 9.0418 1.3166 -8.2276 26 14 7.9764 -0.8103 -6.8089 27 1 6.5097 -0.8182 -7.0412 28 1 8.6357 -1.7244 -7.7757 29 1 8.2607 -1.2656 -5.4243 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3633 0.5137 0.8899 33 1 1.6885 1.8465 0.8900 34 1 1.6885 1.8465 -0.8900 35 1 5.0532 0.2130 -1.1808 36 1 3.4333 -0.5105 -1.3260 37 1 3.7939 1.0341 -2.1340 38 1 3.7676 1.0203 2.1348 39 1 3.4565 -0.5248 1.3077 40 1 5.0599 0.2395 1.1922 41 1 6.3763 1.0622 0.9874 42 1 6.4087 0.9588 -0.7981 43 1 8.2511 4.4687 0.7285 44 1 7.1928 3.5100 1.8369 45 1 6.2385 3.5688 -2.2798 46 1 7.3833 4.8532 -1.7900 47 1 8.4494 0.9208 -1.9963 48 1 6.8060 1.4930 -2.3707 49 1 7.9266 0.4834 -4.6038 50 1 9.0011 0.7077 -8.9815 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692370840.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:00 Heat of formation + Delta-G solvation = -56.870174 kcal Electronic energy + Delta-G solvation = -31622.349643 eV Core-core repulsion = 27458.806876 eV Total energy + Delta-G solvation = -4163.542767 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.54394 -39.59770 -38.19173 -37.80213 -35.28676 -34.18700 -33.57676 -31.69822 -30.97520 -29.90378 -27.70846 -27.65566 -26.76990 -26.06710 -25.28228 -24.07919 -22.75659 -20.99722 -20.24395 -19.52600 -18.89413 -18.09880 -17.23348 -16.92019 -16.53416 -16.18187 -15.86561 -15.49606 -15.36817 -15.07958 -14.86980 -14.59354 -14.36362 -13.84621 -13.70642 -13.51565 -13.19121 -13.07294 -12.92459 -12.61407 -12.46922 -12.41255 -12.40889 -12.21039 -11.92558 -11.89952 -11.74479 -11.64294 -11.43673 -11.36107 -11.22863 -11.18526 -10.96213 -10.87272 -10.60636 -9.97661 -9.95458 -9.87447 -9.56318 -8.94164 -8.56876 -8.17851 -8.05722 -6.30689 -3.82074 2.40722 2.54222 3.01164 3.05856 3.14403 3.49541 3.70368 3.74579 4.04032 4.09977 4.19541 4.28003 4.49036 4.55611 4.58520 4.77089 4.80844 4.83178 4.93127 5.00692 5.04400 5.11683 5.21660 5.28889 5.31569 5.33539 5.35503 5.42992 5.47070 5.52243 5.52974 5.59170 5.63362 5.65368 5.66895 5.69101 5.84645 5.86902 5.93093 5.97905 6.06137 6.23085 6.81363 6.81728 6.95434 7.31314 7.58249 7.92137 8.14588 8.60629 8.95931 9.42725 9.84014 10.82600 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010485 B = 0.003661 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.867561 B = 7645.713709 C = 9484.385868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.388 6.388 3 C 0.087 3.913 4 C -0.075 4.075 5 C -0.146 4.146 6 C -0.145 4.145 7 C 0.546 3.454 8 O -0.543 6.543 9 N -0.614 5.614 10 C 0.050 3.950 11 C 0.046 3.954 12 H 0.136 0.864 13 C -0.129 4.129 14 C 0.106 3.894 15 H 0.126 0.874 16 C 0.039 3.961 17 N -0.479 5.479 18 C 0.027 3.973 19 C 0.454 3.546 20 O -0.556 6.556 21 N -0.593 5.593 22 C -0.303 4.303 23 H 0.119 0.881 24 C 0.041 3.959 25 N -0.882 5.882 26 Si 0.878 3.122 27 H -0.271 1.271 28 H -0.276 1.276 29 H -0.269 1.269 30 H 0.042 0.958 31 H 0.086 0.914 32 H 0.040 0.960 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.101 0.899 44 H 0.080 0.920 45 H 0.061 0.939 46 H 0.096 0.904 47 H 0.091 0.909 48 H 0.054 0.946 49 H 0.369 0.631 50 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.752 -5.274 22.239 25.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.307 6.307 3 C 0.009 3.991 4 C -0.078 4.078 5 C -0.204 4.204 6 C -0.202 4.202 7 C 0.334 3.666 8 O -0.420 6.420 9 N -0.348 5.348 10 C -0.074 4.074 11 C -0.062 4.062 12 H 0.154 0.846 13 C -0.168 4.168 14 C 0.003 3.997 15 H 0.144 0.856 16 C -0.090 4.090 17 N -0.203 5.203 18 C -0.105 4.105 19 C 0.239 3.761 20 O -0.437 6.437 21 N -0.233 5.233 22 C -0.432 4.432 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.522 5.522 26 Si 0.705 3.295 27 H -0.197 1.197 28 H -0.202 1.202 29 H -0.195 1.195 30 H 0.060 0.940 31 H 0.105 0.895 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.104 0.896 43 H 0.119 0.881 44 H 0.099 0.901 45 H 0.079 0.921 46 H 0.114 0.886 47 H 0.109 0.891 48 H 0.072 0.928 49 H 0.201 0.799 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.276 -3.967 21.776 24.841 hybrid contribution -1.555 -1.723 -0.067 2.322 sum -12.831 -5.690 21.709 25.851 Atomic orbital electron populations 1.22728 0.80762 1.02691 1.00147 1.87791 1.19758 1.27652 1.95500 1.22177 0.91085 0.84245 1.01543 1.20632 0.94936 0.93057 0.99161 1.21979 1.01985 1.01122 0.95271 1.21992 1.02175 1.00985 0.95084 1.20029 0.80549 0.90672 0.75310 1.90702 1.59969 1.40847 1.50449 1.49129 1.04305 1.08805 1.72601 1.23731 0.89392 0.91280 1.02957 1.25225 0.94633 0.95550 0.90803 0.84612 1.24206 0.97216 0.97541 0.97808 1.24159 0.90949 0.88175 0.96372 0.85646 1.23676 0.92048 0.98290 0.94938 1.65116 1.44665 1.10258 1.00216 1.22254 0.99914 0.94777 0.93573 1.19598 0.84942 0.86790 0.84799 1.90566 1.48980 1.19890 1.84250 1.42203 1.58793 1.13188 1.09115 1.19416 1.39248 1.02033 0.82505 0.86307 1.25028 0.97702 0.98339 0.95084 1.69618 1.46378 1.36380 0.99858 0.86693 0.79801 0.84662 0.78356 1.19690 1.20158 1.19496 0.93960 0.89539 0.94094 0.92508 0.92406 0.91547 0.90161 0.92124 0.92458 0.90352 0.91265 0.90069 0.89551 0.88102 0.90098 0.92095 0.88565 0.89104 0.92840 0.79859 0.91635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.39 -3.95 9.11 -35.23 -0.32 -4.27 16 3 C 0.09 0.94 4.09 37.16 0.15 1.09 16 4 C -0.07 -0.79 0.58 -155.66 -0.09 -0.88 16 5 C -0.15 -1.52 8.17 37.16 0.30 -1.22 16 6 C -0.15 -1.23 8.10 37.16 0.30 -0.93 16 7 C 0.55 7.07 6.59 -10.99 -0.07 7.00 16 8 O -0.54 -8.80 16.32 5.55 0.09 -8.70 16 9 N -0.61 -7.05 2.93 -156.79 -0.46 -7.51 16 10 C 0.05 0.46 4.30 -1.68 -0.01 0.46 16 11 C 0.05 0.46 5.18 -61.08 -0.32 0.14 16 12 H 0.14 1.06 8.14 -51.93 -0.42 0.64 16 13 C -0.13 -1.19 6.94 -21.25 -0.15 -1.34 16 14 C 0.11 1.24 5.19 -62.56 -0.32 0.92 16 15 H 0.13 1.48 8.03 -51.93 -0.42 1.06 16 16 C 0.04 0.58 5.43 -1.44 -0.01 0.57 16 17 N -0.48 -6.96 4.90 -216.71 -1.06 -8.02 16 18 C 0.03 0.42 4.15 -4.98 -0.02 0.40 16 19 C 0.45 10.11 7.64 -10.99 -0.08 10.03 16 20 O -0.56 -14.77 15.48 5.55 0.09 -14.69 16 21 N -0.59 -13.96 5.09 -10.97 -0.06 -14.01 16 22 C -0.30 -8.55 10.16 -14.93 -0.15 -8.70 16 23 H 0.12 3.84 7.39 -52.49 -0.39 3.46 16 24 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 25 N -0.88 -25.81 13.96 55.50 0.77 -25.03 16 26 Si 0.88 19.26 27.74 -169.99 -4.71 14.55 16 27 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 28 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 29 H -0.27 -5.32 6.52 56.52 0.37 -4.96 16 30 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.09 0.51 8.14 -51.92 -0.42 0.09 16 32 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 34 H 0.06 0.68 8.11 -51.93 -0.42 0.26 16 35 H 0.07 0.62 4.94 -51.93 -0.26 0.37 16 36 H 0.08 0.80 7.45 -51.93 -0.39 0.41 16 37 H 0.06 0.71 8.13 -51.92 -0.42 0.29 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.65 7.50 -51.93 -0.39 0.26 16 40 H 0.07 0.50 4.72 -51.93 -0.25 0.26 16 41 H 0.08 0.58 5.73 -51.93 -0.30 0.29 16 42 H 0.09 0.83 3.09 -51.93 -0.16 0.67 16 43 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.06 1.03 7.41 -51.93 -0.38 0.65 16 46 H 0.10 1.53 8.14 -51.93 -0.42 1.10 16 47 H 0.09 1.20 8.02 -51.93 -0.42 0.79 16 48 H 0.05 0.77 6.05 -51.93 -0.31 0.46 16 49 H 0.37 7.60 5.76 -40.82 -0.24 7.36 16 50 H 0.27 7.37 8.31 -40.82 -0.34 7.04 16 LS Contribution 383.16 15.07 5.77 5.77 Total: -1.00 -34.88 383.16 -7.04 -41.92 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -7.70 Total: 10.06 kcal Atomic # 6 Polarization: 9.38 SS G_CDS: 0.55 Total: 9.93 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: -0.80 Total: -54.58 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: -0.14 Total: -27.66 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -4.71 Total: 14.55 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.88 -7.04 -41.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692370840.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.948 kcal (2) G-P(sol) polarization free energy of solvation -34.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds