Wall clock time and date at job start Tue Mar 31 2020 23:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47323 * 2 1 4 4 H 1.09005 * 110.55404 * 307.88793 * 3 2 1 5 5 C 1.54991 * 110.61999 * 184.99943 * 3 2 1 6 6 C 1.54819 * 102.09290 * 204.31920 * 5 3 2 7 7 C 1.54103 * 104.18460 * 20.88078 * 6 5 3 8 8 H 1.08998 * 109.87744 * 242.45529 * 7 6 5 9 9 C 1.50703 * 109.87365 * 121.45588 * 7 6 5 10 10 O 1.21284 * 119.99438 * 244.99487 * 9 7 6 11 11 N 1.34779 * 120.00077 * 65.00095 * 9 7 6 12 12 C 1.46500 * 119.99594 * 180.02562 * 11 9 7 13 13 C 1.50702 * 109.46883 * 180.02562 * 12 11 9 14 14 C 1.30994 * 120.00204 * 124.99760 * 13 12 11 15 15 C 1.50701 * 119.99826 * 179.71900 * 14 13 12 16 16 N 1.46906 * 109.46794 * 125.27501 * 15 14 13 17 17 C 1.46899 * 110.99658 * 180.02562 * 16 15 14 18 18 C 1.50710 * 109.47002 * 179.97438 * 17 16 15 19 19 O 1.21293 * 119.99625 * 0.02562 * 18 17 16 20 20 N 1.34776 * 119.99907 * 179.97438 * 18 17 16 21 21 C 1.37102 * 119.99380 * 180.02562 * 20 18 17 22 22 H 1.08000 * 120.00561 * 0.02562 * 21 20 18 23 23 C 1.38955 * 119.99698 * 180.02562 * 21 20 18 24 24 N 1.31415 * 119.99897 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 119.99905 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47099 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.47183 * 120.00020 * 25 23 21 28 28 H 1.48502 * 109.47140 * 239.99488 * 25 23 21 29 29 O 1.43734 * 107.29461 * 2.03147 * 7 6 5 30 30 H 1.08998 * 109.47090 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47119 * 299.99634 * 1 2 3 32 32 H 1.08997 * 109.47219 * 59.99747 * 1 2 3 33 33 H 1.09000 * 109.46877 * 240.00055 * 2 1 3 34 34 H 1.08997 * 109.47219 * 120.00253 * 2 1 3 35 35 H 1.09002 * 110.90819 * 86.12726 * 5 3 2 36 36 H 1.09000 * 110.91142 * 322.51510 * 5 3 2 37 37 H 1.08998 * 110.48429 * 262.20679 * 6 5 3 38 38 H 1.09003 * 110.48567 * 139.55753 * 6 5 3 39 39 H 0.96999 * 120.00048 * 359.97438 * 11 9 7 40 40 H 1.08998 * 109.47613 * 59.99379 * 12 11 9 41 41 H 1.09004 * 109.46865 * 299.99589 * 12 11 9 42 42 H 1.08002 * 119.99446 * 304.99290 * 13 12 11 43 43 H 1.08002 * 120.00352 * 0.02562 * 14 13 12 44 44 H 1.08998 * 109.47474 * 245.27493 * 15 14 13 45 45 H 1.09001 * 109.47291 * 5.27780 * 15 14 13 46 46 H 1.00898 * 110.99970 * 56.04982 * 16 15 14 47 47 H 1.08999 * 109.47642 * 299.99582 * 17 16 15 48 48 H 1.08997 * 109.47569 * 60.00519 * 17 16 15 49 49 H 0.96991 * 120.00145 * 0.02562 * 20 18 17 50 50 H 0.96995 * 119.99617 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5767 2.0122 -0.8055 5 6 3.5844 1.4753 -0.1264 6 6 3.9330 2.8426 0.5105 7 6 2.7068 3.1768 1.3821 8 1 2.2327 4.0892 1.0205 9 6 3.1313 3.3541 2.8171 10 8 2.7395 2.5807 3.6653 11 7 3.9461 4.3722 3.1580 12 6 4.3591 4.5441 4.5531 13 6 5.2608 5.7464 4.6654 14 6 4.9695 6.7073 5.5067 15 6 5.8746 7.9065 5.6235 16 7 5.0929 9.1323 5.4125 17 6 5.9445 10.3245 5.5187 18 6 5.1098 11.5595 5.2964 19 8 3.9222 11.4565 5.0721 20 7 5.6827 12.7784 5.3479 21 6 4.9232 13.9018 5.1462 22 1 3.8658 13.8102 4.9465 23 6 5.5140 15.1584 5.1987 24 7 6.8005 15.2700 5.4422 25 14 4.4791 16.6891 4.9246 26 1 3.0699 16.2951 4.6716 27 1 4.5432 17.5526 6.1310 28 1 5.0016 17.4366 3.7526 29 8 1.7931 2.0724 1.2755 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.8899 1.4443 -1.1723 36 1 4.0382 0.6581 0.4343 37 1 4.0697 3.5995 -0.2619 38 1 4.8280 2.7592 1.1271 39 1 4.2596 4.9905 2.4796 40 1 4.8950 3.6551 4.8856 41 1 3.4778 4.6918 5.1773 42 1 6.1472 5.8157 4.0523 43 1 4.0833 6.6378 6.1201 44 1 6.3230 7.9280 6.6167 45 1 6.6608 7.8431 4.8712 46 1 4.3181 9.1825 6.0569 47 1 6.3937 10.3631 6.5111 48 1 6.7309 10.2777 4.7654 49 1 6.6323 12.8607 5.5276 50 1 7.2128 16.1472 5.4792 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699263995.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:21 Heat of formation + Delta-G solvation = -137.532871 kcal Electronic energy + Delta-G solvation = -27709.343694 eV Core-core repulsion = 23542.303130 eV Total energy + Delta-G solvation = -4167.040564 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.43570 -40.15678 -39.68232 -37.75442 -36.36281 -35.82120 -34.63707 -33.99385 -33.25657 -32.96285 -30.36932 -29.17462 -27.47258 -25.98676 -24.99862 -23.55414 -22.85452 -21.94575 -21.63483 -21.23392 -20.55088 -19.87074 -18.49471 -17.92467 -17.63494 -17.47052 -16.98540 -16.55996 -16.47288 -16.10515 -15.92777 -15.68569 -15.27266 -15.09481 -14.99064 -14.71724 -14.59871 -14.42434 -14.38090 -14.04673 -13.91718 -13.53882 -13.27014 -13.07731 -12.90713 -12.83514 -12.71011 -12.68517 -12.43041 -12.40408 -12.11747 -12.04318 -11.97283 -11.76912 -11.55322 -11.51349 -11.15173 -10.66531 -10.36837 -10.34429 -10.05277 -10.00723 -9.26922 -8.46814 -5.95415 1.01656 1.36886 1.42591 1.49864 1.56563 2.05467 2.07796 2.29937 2.97194 3.01560 3.20736 3.46207 3.58355 3.63611 3.76246 3.86006 3.86980 4.08776 4.16157 4.22971 4.30933 4.32953 4.38548 4.42633 4.47507 4.54567 4.56888 4.57921 4.66057 4.68190 4.78349 4.85809 4.86539 4.91121 5.00284 5.06960 5.13494 5.21089 5.29886 5.40302 5.41503 5.66042 5.75962 5.87352 5.90174 6.10460 6.37215 6.49030 6.60441 7.13036 7.15881 7.56609 8.12086 8.70747 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018293 B = 0.001385 C = 0.001331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.288319 B =20213.111580 C =21029.167565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C 0.064 3.936 4 H 0.088 0.912 5 C -0.146 4.146 6 C -0.141 4.141 7 C 0.057 3.943 8 H 0.114 0.886 9 C 0.507 3.493 10 O -0.577 6.577 11 N -0.710 5.710 12 C 0.154 3.846 13 C -0.161 4.161 14 C -0.126 4.126 15 C 0.087 3.913 16 N -0.682 5.682 17 C 0.065 3.935 18 C 0.436 3.564 19 O -0.625 6.625 20 N -0.572 5.572 21 C -0.335 4.335 22 H 0.078 0.922 23 C -0.011 4.011 24 N -0.919 5.919 25 Si 0.992 3.008 26 H -0.274 1.274 27 H -0.271 1.271 28 H -0.270 1.270 29 O -0.379 6.379 30 H 0.062 0.938 31 H 0.037 0.963 32 H 0.064 0.936 33 H 0.101 0.899 34 H 0.054 0.946 35 H 0.111 0.889 36 H 0.070 0.930 37 H 0.117 0.883 38 H 0.082 0.918 39 H 0.418 0.582 40 H 0.074 0.926 41 H 0.055 0.945 42 H 0.137 0.863 43 H 0.108 0.892 44 H 0.052 0.948 45 H 0.091 0.909 46 H 0.343 0.657 47 H 0.068 0.932 48 H 0.108 0.892 49 H 0.397 0.603 50 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.767 -28.098 -11.690 30.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C 0.007 3.993 4 H 0.106 0.894 5 C -0.184 4.184 6 C -0.179 4.179 7 C -0.004 4.004 8 H 0.131 0.869 9 C 0.294 3.706 10 O -0.456 6.456 11 N -0.364 5.364 12 C 0.031 3.969 13 C -0.180 4.180 14 C -0.145 4.145 15 C -0.041 4.041 16 N -0.314 5.314 17 C -0.067 4.067 18 C 0.224 3.776 19 O -0.511 6.511 20 N -0.210 5.210 21 C -0.464 4.464 22 H 0.096 0.904 23 C -0.211 4.211 24 N -0.560 5.560 25 Si 0.816 3.184 26 H -0.199 1.199 27 H -0.196 1.196 28 H -0.196 1.196 29 O -0.298 6.298 30 H 0.081 0.919 31 H 0.056 0.944 32 H 0.083 0.917 33 H 0.119 0.881 34 H 0.073 0.927 35 H 0.130 0.870 36 H 0.088 0.912 37 H 0.136 0.864 38 H 0.101 0.899 39 H 0.255 0.745 40 H 0.092 0.908 41 H 0.074 0.926 42 H 0.155 0.845 43 H 0.126 0.874 44 H 0.070 0.930 45 H 0.109 0.891 46 H 0.162 0.838 47 H 0.086 0.914 48 H 0.126 0.874 49 H 0.231 0.769 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.276 -28.645 -11.734 30.957 hybrid contribution 0.246 1.361 1.019 1.718 sum -0.030 -27.284 -10.715 29.312 Atomic orbital electron populations 1.21733 0.95477 1.02033 1.01622 1.21589 0.96623 0.94073 1.03141 1.23553 0.95549 0.94786 0.85389 0.89422 1.23205 0.94784 0.96968 1.03414 1.22993 0.96072 0.99360 0.99474 1.22780 0.92887 0.93226 0.91522 0.86895 1.21092 0.77967 0.80294 0.91237 1.90696 1.56340 1.45606 1.52997 1.45839 1.49475 1.30218 1.10834 1.20264 0.97072 0.97159 0.82449 1.22737 1.00469 0.94509 1.00310 1.22817 0.99166 0.93802 0.98755 1.21133 0.95107 0.86704 1.01175 1.60135 1.11306 1.00469 1.59497 1.21554 0.95076 0.87728 1.02373 1.20938 0.88743 0.85432 0.82538 1.90496 1.18096 1.87131 1.55422 1.41927 1.11464 1.04702 1.62877 1.19708 0.94116 0.84998 1.47624 0.90410 1.26012 0.97218 1.01490 0.96376 1.69672 1.10913 1.26306 1.49151 0.84884 0.77959 0.77261 0.78316 1.19894 1.19615 1.19555 1.88999 1.57143 1.44893 1.38780 0.91858 0.94400 0.91719 0.88079 0.92670 0.87020 0.91158 0.86439 0.89922 0.74512 0.90776 0.92622 0.84486 0.87432 0.93004 0.89089 0.83823 0.91401 0.87415 0.76899 0.91287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.86 71.98 0.71 -1.27 16 2 C -0.12 -1.43 5.70 30.59 0.17 -1.25 16 3 C 0.06 0.83 3.28 31.27 0.10 0.94 16 4 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 5 C -0.15 -1.31 6.59 31.90 0.21 -1.10 16 6 C -0.14 -1.26 6.61 31.59 0.21 -1.05 16 7 C 0.06 0.93 3.84 30.22 0.12 1.04 16 8 H 0.11 1.40 8.14 -2.39 -0.02 1.39 16 9 C 0.51 11.30 6.95 87.66 0.61 11.91 16 10 O -0.58 -18.92 16.53 15.68 0.26 -18.66 16 11 N -0.71 -11.68 5.52 -466.77 -2.58 -14.26 16 12 C 0.15 2.73 6.11 85.63 0.52 3.26 16 13 C -0.16 -2.45 9.24 25.65 0.24 -2.21 16 14 C -0.13 -2.33 9.38 25.65 0.24 -2.09 16 15 C 0.09 1.76 6.12 85.56 0.52 2.28 16 16 N -0.68 -20.31 6.11 -521.96 -3.19 -23.50 16 17 C 0.06 2.11 6.17 85.56 0.53 2.64 16 18 C 0.44 20.42 7.82 87.66 0.69 21.10 16 19 O -0.62 -34.51 15.78 -3.07 -0.05 -34.56 16 20 N -0.57 -28.97 5.29 -306.97 -1.62 -30.59 16 21 C -0.33 -18.92 9.68 84.04 0.81 -18.11 16 22 H 0.08 4.72 7.16 -2.91 -0.02 4.69 16 23 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 24 N -0.92 -48.98 13.05 21.66 0.28 -48.70 16 25 Si 0.99 42.58 29.55 68.60 2.03 44.61 16 26 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 27 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 28 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 29 O -0.38 -8.24 10.31 -130.26 -1.34 -9.58 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.68 16 31 H 0.04 0.67 8.06 -2.39 -0.02 0.66 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.07 0.77 8.06 -2.39 -0.02 0.75 16 37 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.08 0.76 7.69 -2.39 -0.02 0.74 16 39 H 0.42 4.47 8.46 -92.71 -0.78 3.68 16 40 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.06 1.19 7.79 -2.38 -0.02 1.17 16 42 H 0.14 1.57 7.84 -2.91 -0.02 1.55 16 43 H 0.11 2.09 7.84 -2.91 -0.02 2.07 16 44 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.09 1.61 7.79 -2.39 -0.02 1.59 16 46 H 0.34 10.99 8.42 -89.70 -0.76 10.24 16 47 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 48 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 49 H 0.40 18.94 7.90 -92.72 -0.73 18.20 16 50 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 Total: -1.00 -78.47 419.35 -1.38 -79.85 By element: Atomic # 1 Polarization: 40.73 SS G_CDS: -1.32 Total: 39.42 kcal Atomic # 6 Polarization: 9.82 SS G_CDS: 6.15 Total: 15.97 kcal Atomic # 7 Polarization: -109.94 SS G_CDS: -7.11 Total: -117.05 kcal Atomic # 8 Polarization: -61.67 SS G_CDS: -1.13 Total: -62.80 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -78.47 -1.38 -79.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699263995.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.681 kcal (2) G-P(sol) polarization free energy of solvation -78.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds