Wall clock time and date at job start Tue Mar 31 2020 23:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46992 * 2 1 4 4 H 1.09000 * 110.27683 * 304.36908 * 3 2 1 5 5 C 1.54943 * 110.31040 * 182.16435 * 3 2 1 6 6 C 1.55300 * 100.94660 * 204.64240 * 5 3 2 7 7 C 1.54386 * 102.25042 * 34.13463 * 6 5 3 8 8 H 1.08999 * 109.90346 * 98.20113 * 7 6 5 9 9 C 1.50699 * 109.83063 * 219.12790 * 7 6 5 10 10 O 1.21282 * 119.99520 * 114.59046 * 9 7 6 11 11 N 1.34773 * 120.00393 * 294.58984 * 9 7 6 12 12 C 1.46497 * 120.00215 * 180.02562 * 11 9 7 13 13 C 1.50700 * 109.47245 * 180.02562 * 12 11 9 14 14 C 1.30997 * 120.00291 * 124.99889 * 13 12 11 15 15 C 1.50700 * 120.00291 * 179.97438 * 14 13 12 16 16 N 1.46906 * 109.47183 * 125.00007 * 15 14 13 17 17 C 1.46901 * 110.99793 * 180.02562 * 16 15 14 18 18 C 1.50701 * 109.46921 * 179.97438 * 17 16 15 19 19 O 1.21294 * 119.99849 * 0.02562 * 18 17 16 20 20 N 1.34780 * 119.99795 * 179.97438 * 18 17 16 21 21 C 1.37101 * 119.99707 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99704 * 359.97438 * 21 20 18 23 23 C 1.38941 * 119.99927 * 180.02562 * 21 20 18 24 24 N 1.31413 * 120.00506 * 180.02562 * 23 21 20 25 25 Si 1.86804 * 120.00009 * 359.97438 * 23 21 20 26 26 H 1.48494 * 109.47177 * 89.99959 * 25 23 21 27 27 H 1.48505 * 109.47036 * 210.00243 * 25 23 21 28 28 H 1.48499 * 109.46776 * 329.99732 * 25 23 21 29 29 O 1.43235 * 107.58915 * 338.64375 * 7 6 5 30 30 H 1.08995 * 109.47366 * 59.99707 * 1 2 3 31 31 H 1.09000 * 109.47112 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46853 * 299.99745 * 1 2 3 33 33 H 1.09002 * 109.47002 * 240.00934 * 2 1 3 34 34 H 1.08995 * 109.47366 * 120.00293 * 2 1 3 35 35 H 1.08999 * 111.12628 * 322.56577 * 5 3 2 36 36 H 1.09011 * 111.12044 * 86.68007 * 5 3 2 37 37 H 1.09007 * 110.84725 * 275.94690 * 6 5 3 38 38 H 1.08999 * 110.84959 * 152.32675 * 6 5 3 39 39 H 0.97003 * 119.99825 * 359.97438 * 11 9 7 40 40 H 1.08996 * 109.47296 * 59.99497 * 12 11 9 41 41 H 1.09004 * 109.47171 * 299.99918 * 12 11 9 42 42 H 1.08003 * 119.99888 * 304.99890 * 13 12 11 43 43 H 1.08003 * 119.99821 * 0.02562 * 14 13 12 44 44 H 1.08995 * 109.46796 * 5.00212 * 15 14 13 45 45 H 1.09002 * 109.47497 * 245.00005 * 15 14 13 46 46 H 1.00898 * 110.99995 * 303.95361 * 16 15 14 47 47 H 1.09002 * 109.47401 * 59.99808 * 17 16 15 48 48 H 1.09001 * 109.46874 * 299.99821 * 17 16 15 49 49 H 0.96995 * 120.00011 * 0.02562 * 20 18 17 50 50 H 0.96993 * 120.00255 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6217 1.9910 -0.8439 5 6 3.5883 1.4656 -0.0549 6 6 3.8856 2.8476 0.5881 7 6 2.7561 2.9725 1.6331 8 1 3.1269 2.6841 2.6167 9 6 2.2514 4.3919 1.6733 10 8 1.1161 4.6418 1.3276 11 7 3.0616 5.3836 2.0934 12 6 2.5708 6.7634 2.1329 13 6 3.6639 7.6712 2.6351 14 6 4.0342 8.7065 1.9231 15 6 5.1269 9.6147 2.4255 16 7 6.1830 9.7186 1.4097 17 6 7.2678 10.5976 1.8662 18 6 8.3304 10.6790 0.8007 19 8 8.1969 10.0655 -0.2371 20 7 9.4287 11.4344 1.0005 21 6 10.3951 11.5088 0.0310 22 1 10.2766 10.9619 -0.8927 23 6 11.5275 12.2871 0.2372 24 7 12.4537 12.3589 -0.6923 25 14 11.7328 13.2325 1.8351 26 1 12.4403 12.3824 2.8259 27 1 12.5247 14.4634 1.5838 28 1 10.3964 13.6035 2.3659 29 8 1.6988 2.0919 1.2351 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 4.0145 0.6565 0.5382 36 1 3.9455 1.4253 -1.0840 37 1 3.8175 3.6434 -0.1537 38 1 4.8628 2.8486 1.0711 39 1 3.9696 5.1837 2.3702 40 1 1.7117 6.8244 2.8009 41 1 2.2743 7.0724 1.1305 42 1 4.1419 7.4682 3.5820 43 1 3.5559 8.9098 0.9763 44 1 5.5458 9.2050 3.3445 45 1 4.7147 10.6041 2.6235 46 1 6.5370 8.8069 1.1615 47 1 7.7015 10.1944 2.7813 48 1 6.8706 11.5939 2.0606 49 1 9.5352 11.9253 1.8303 50 1 13.2444 12.9019 -0.5482 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699264001.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:30 Heat of formation + Delta-G solvation = -105.294808 kcal Electronic energy + Delta-G solvation = -27905.358498 eV Core-core repulsion = 23739.715882 eV Total energy + Delta-G solvation = -4165.642617 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.77865 -38.96422 -38.54904 -36.84252 -35.31751 -34.07717 -33.98693 -33.13576 -32.40637 -31.68473 -29.63930 -28.27393 -26.27521 -24.73829 -23.86405 -22.65129 -22.35163 -21.54624 -20.73906 -19.87270 -19.36777 -18.38058 -17.99723 -17.27566 -16.56287 -16.35437 -15.96534 -15.69930 -15.35899 -14.92190 -14.75421 -14.43803 -14.41503 -14.10170 -13.96860 -13.75252 -13.64156 -13.37011 -13.34935 -13.05381 -12.90533 -12.53314 -12.36706 -12.25442 -12.07163 -12.04011 -11.92460 -11.68680 -11.51946 -11.30099 -11.27397 -11.18342 -11.06471 -10.62563 -10.56989 -10.00765 -9.84083 -9.60687 -9.53068 -9.23460 -8.65093 -8.25066 -8.19489 -6.34062 -3.85791 1.70963 2.29234 2.80132 3.00040 3.03746 3.12600 3.44546 3.70067 3.91784 4.06178 4.09834 4.17903 4.27609 4.48651 4.53181 4.63917 4.71958 4.74017 4.82949 4.85735 4.95727 5.01201 5.14258 5.17979 5.23764 5.30118 5.31266 5.32439 5.35992 5.46406 5.49456 5.57446 5.57908 5.58341 5.61384 5.75425 5.79054 5.88893 5.96774 6.02857 6.34742 6.43139 6.50733 7.00379 7.16835 7.49914 7.55061 7.91435 8.11099 8.56439 8.91705 9.39064 9.78946 10.79010 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018348 B = 0.001492 C = 0.001408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.701138 B =18758.070449 C =19876.969214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C 0.076 3.924 4 H 0.074 0.926 5 C -0.151 4.151 6 C -0.147 4.147 7 C 0.067 3.933 8 H 0.106 0.894 9 C 0.499 3.501 10 O -0.524 6.524 11 N -0.725 5.725 12 C 0.153 3.847 13 C -0.190 4.190 14 C -0.109 4.109 15 C 0.083 3.917 16 N -0.665 5.665 17 C 0.048 3.952 18 C 0.449 3.551 19 O -0.565 6.565 20 N -0.590 5.590 21 C -0.306 4.306 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.881 5.881 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.269 1.269 29 O -0.346 6.346 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.402 0.598 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.115 0.885 43 H 0.120 0.880 44 H 0.033 0.967 45 H 0.083 0.917 46 H 0.352 0.648 47 H 0.045 0.955 48 H 0.088 0.912 49 H 0.371 0.629 50 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.134 -20.369 9.827 29.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C 0.018 3.982 4 H 0.092 0.908 5 C -0.188 4.188 6 C -0.185 4.185 7 C 0.005 3.995 8 H 0.123 0.877 9 C 0.284 3.716 10 O -0.398 6.398 11 N -0.379 5.379 12 C 0.031 3.969 13 C -0.209 4.209 14 C -0.129 4.129 15 C -0.046 4.046 16 N -0.298 5.298 17 C -0.085 4.085 18 C 0.235 3.765 19 O -0.447 6.447 20 N -0.229 5.229 21 C -0.435 4.435 22 H 0.137 0.863 23 C -0.161 4.161 24 N -0.521 5.521 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.201 1.201 28 H -0.195 1.195 29 O -0.264 6.264 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.112 0.888 39 H 0.236 0.764 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.133 0.867 43 H 0.138 0.862 44 H 0.051 0.949 45 H 0.101 0.899 46 H 0.171 0.829 47 H 0.063 0.937 48 H 0.106 0.894 49 H 0.203 0.797 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -20.373 -20.056 8.533 29.835 hybrid contribution 1.467 0.459 1.984 2.510 sum -18.906 -19.597 10.517 29.191 Atomic orbital electron populations 1.21720 0.95083 1.01448 1.02615 1.21652 0.97096 0.94319 1.02643 1.23157 0.93692 0.93875 0.87449 0.90847 1.23332 0.95808 0.97048 1.02634 1.23124 0.98446 0.98799 0.98161 1.22602 0.88313 0.88100 1.00490 0.87651 1.21057 0.85985 0.87289 0.77261 1.90724 1.18640 1.83924 1.46547 1.45988 1.16678 1.07256 1.67982 1.20302 0.95483 0.79560 1.01602 1.22814 1.00094 0.97253 1.00774 1.22994 0.95883 0.94845 0.99151 1.21079 0.91474 0.99369 0.92696 1.60027 1.11712 1.17974 1.40091 1.21724 0.92064 0.98665 0.96048 1.19692 0.83426 0.84286 0.89127 1.90569 1.78307 1.47498 1.28278 1.42204 1.19143 1.43661 1.17924 1.19436 0.96694 1.28285 0.99080 0.86277 1.25036 0.95707 0.97612 0.97741 1.69618 1.09399 1.39917 1.33126 0.86670 0.78616 0.80563 0.83523 1.19667 1.20130 1.19471 1.88529 1.40826 1.57213 1.39808 0.92752 0.92807 0.91874 0.90616 0.91183 0.89798 0.89316 0.89718 0.88751 0.76385 0.90792 0.90931 0.86742 0.86179 0.94908 0.89902 0.82853 0.93704 0.89357 0.79673 0.91584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.83 37.16 0.37 -0.68 16 2 C -0.12 -0.74 5.68 -26.73 -0.15 -0.89 16 3 C 0.08 0.58 3.43 -25.71 -0.09 0.49 16 4 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 5 C -0.15 -0.82 6.57 -24.49 -0.16 -0.98 16 6 C -0.15 -0.86 6.52 -24.79 -0.16 -1.02 16 7 C 0.07 0.53 3.95 -27.16 -0.11 0.42 16 8 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 9 C 0.50 5.23 7.03 -10.99 -0.08 5.15 16 10 O -0.52 -7.91 16.52 -14.10 -0.23 -8.14 16 11 N -0.72 -5.79 5.53 -61.48 -0.34 -6.13 16 12 C 0.15 1.33 6.11 -5.20 -0.03 1.30 16 13 C -0.19 -1.48 9.24 -36.03 -0.33 -1.82 16 14 C -0.11 -1.03 9.38 -36.03 -0.34 -1.36 16 15 C 0.08 0.87 6.13 -4.97 -0.03 0.84 16 16 N -0.67 -9.75 6.12 -116.33 -0.71 -10.46 16 17 C 0.05 0.75 6.17 -4.97 -0.03 0.72 16 18 C 0.45 9.98 7.82 -10.98 -0.09 9.90 16 19 O -0.56 -14.96 15.78 5.55 0.09 -14.88 16 20 N -0.59 -13.81 5.09 -10.96 -0.06 -13.86 16 21 C -0.31 -8.58 10.16 -14.94 -0.15 -8.73 16 22 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 23 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 24 N -0.88 -25.48 13.96 55.50 0.77 -24.70 16 25 Si 0.88 19.04 27.74 -169.99 -4.71 14.32 16 26 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 27 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 28 H -0.27 -5.30 6.52 56.52 0.37 -4.93 16 29 O -0.35 -3.54 9.90 -54.88 -0.54 -4.08 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.54 7.90 -51.93 -0.41 0.13 16 33 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.37 8.06 -51.93 -0.42 -0.05 16 36 H 0.09 0.40 8.14 -51.92 -0.42 -0.02 16 37 H 0.08 0.58 7.84 -51.93 -0.41 0.17 16 38 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.40 2.17 8.46 -40.82 -0.35 1.82 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.72 7.79 -51.93 -0.40 0.31 16 42 H 0.11 0.76 7.84 -52.48 -0.41 0.35 16 43 H 0.12 1.21 7.84 -52.48 -0.41 0.80 16 44 H 0.03 0.31 7.79 -51.93 -0.40 -0.10 16 45 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.35 5.34 8.42 -39.29 -0.33 5.01 16 47 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 49 H 0.37 7.56 5.76 -40.82 -0.24 7.32 16 50 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 415.97 15.07 6.27 6.27 Total: -1.00 -35.90 415.97 -9.35 -45.25 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: -8.41 Total: 12.03 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: -1.48 Total: 4.38 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: -0.33 Total: -55.15 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: -0.69 Total: -27.10 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -4.71 Total: 14.32 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -35.90 -9.35 -45.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699264001.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.042 kcal (2) G-P(sol) polarization free energy of solvation -35.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds