Wall clock time and date at job start Tue Mar 31 2020 23:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46992 * 2 1 4 4 H 1.09000 * 110.27683 * 304.36908 * 3 2 1 5 5 C 1.54943 * 110.31040 * 182.16435 * 3 2 1 6 6 C 1.55300 * 100.94660 * 204.64240 * 5 3 2 7 7 C 1.54386 * 102.25042 * 34.13463 * 6 5 3 8 8 H 1.08999 * 109.90346 * 98.20113 * 7 6 5 9 9 C 1.50699 * 109.83063 * 219.12790 * 7 6 5 10 10 O 1.21282 * 119.99520 * 114.59046 * 9 7 6 11 11 N 1.34773 * 120.00393 * 294.58984 * 9 7 6 12 12 C 1.46497 * 120.00215 * 180.02562 * 11 9 7 13 13 C 1.50700 * 109.47245 * 180.02562 * 12 11 9 14 14 C 1.30997 * 120.00291 * 124.99889 * 13 12 11 15 15 C 1.50700 * 120.00291 * 179.97438 * 14 13 12 16 16 N 1.46906 * 109.47183 * 125.00007 * 15 14 13 17 17 C 1.46901 * 110.99793 * 180.02562 * 16 15 14 18 18 C 1.50701 * 109.46921 * 179.97438 * 17 16 15 19 19 O 1.21294 * 119.99849 * 0.02562 * 18 17 16 20 20 N 1.34780 * 119.99795 * 179.97438 * 18 17 16 21 21 C 1.37101 * 119.99707 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99704 * 359.97438 * 21 20 18 23 23 C 1.38941 * 119.99927 * 180.02562 * 21 20 18 24 24 N 1.31413 * 120.00506 * 180.02562 * 23 21 20 25 25 Si 1.86804 * 120.00009 * 359.97438 * 23 21 20 26 26 H 1.48494 * 109.47177 * 89.99959 * 25 23 21 27 27 H 1.48505 * 109.47036 * 210.00243 * 25 23 21 28 28 H 1.48499 * 109.46776 * 329.99732 * 25 23 21 29 29 O 1.43235 * 107.58915 * 338.64375 * 7 6 5 30 30 H 1.08995 * 109.47366 * 59.99707 * 1 2 3 31 31 H 1.09000 * 109.47112 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46853 * 299.99745 * 1 2 3 33 33 H 1.09002 * 109.47002 * 240.00934 * 2 1 3 34 34 H 1.08995 * 109.47366 * 120.00293 * 2 1 3 35 35 H 1.08999 * 111.12628 * 322.56577 * 5 3 2 36 36 H 1.09011 * 111.12044 * 86.68007 * 5 3 2 37 37 H 1.09007 * 110.84725 * 275.94690 * 6 5 3 38 38 H 1.08999 * 110.84959 * 152.32675 * 6 5 3 39 39 H 0.97003 * 119.99825 * 359.97438 * 11 9 7 40 40 H 1.08996 * 109.47296 * 59.99497 * 12 11 9 41 41 H 1.09004 * 109.47171 * 299.99918 * 12 11 9 42 42 H 1.08003 * 119.99888 * 304.99890 * 13 12 11 43 43 H 1.08003 * 119.99821 * 0.02562 * 14 13 12 44 44 H 1.08995 * 109.46796 * 5.00212 * 15 14 13 45 45 H 1.09002 * 109.47497 * 245.00005 * 15 14 13 46 46 H 1.00898 * 110.99995 * 303.95361 * 16 15 14 47 47 H 1.09002 * 109.47401 * 59.99808 * 17 16 15 48 48 H 1.09001 * 109.46874 * 299.99821 * 17 16 15 49 49 H 0.96995 * 120.00011 * 0.02562 * 20 18 17 50 50 H 0.96993 * 120.00255 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6217 1.9910 -0.8439 5 6 3.5883 1.4656 -0.0549 6 6 3.8856 2.8476 0.5881 7 6 2.7561 2.9725 1.6331 8 1 3.1269 2.6841 2.6167 9 6 2.2514 4.3919 1.6733 10 8 1.1161 4.6418 1.3276 11 7 3.0616 5.3836 2.0934 12 6 2.5708 6.7634 2.1329 13 6 3.6639 7.6712 2.6351 14 6 4.0342 8.7065 1.9231 15 6 5.1269 9.6147 2.4255 16 7 6.1830 9.7186 1.4097 17 6 7.2678 10.5976 1.8662 18 6 8.3304 10.6790 0.8007 19 8 8.1969 10.0655 -0.2371 20 7 9.4287 11.4344 1.0005 21 6 10.3951 11.5088 0.0310 22 1 10.2766 10.9619 -0.8927 23 6 11.5275 12.2871 0.2372 24 7 12.4537 12.3589 -0.6923 25 14 11.7328 13.2325 1.8351 26 1 12.4403 12.3824 2.8259 27 1 12.5247 14.4634 1.5838 28 1 10.3964 13.6035 2.3659 29 8 1.6988 2.0919 1.2351 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 4.0145 0.6565 0.5382 36 1 3.9455 1.4253 -1.0840 37 1 3.8175 3.6434 -0.1537 38 1 4.8628 2.8486 1.0711 39 1 3.9696 5.1837 2.3702 40 1 1.7117 6.8244 2.8009 41 1 2.2743 7.0724 1.1305 42 1 4.1419 7.4682 3.5820 43 1 3.5559 8.9098 0.9763 44 1 5.5458 9.2050 3.3445 45 1 4.7147 10.6041 2.6235 46 1 6.5370 8.8069 1.1615 47 1 7.7015 10.1944 2.7813 48 1 6.8706 11.5939 2.0606 49 1 9.5352 11.9253 1.8303 50 1 13.2444 12.9019 -0.5482 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699264001.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:29 Heat of formation + Delta-G solvation = -133.637248 kcal Electronic energy + Delta-G solvation = -27906.587519 eV Core-core repulsion = 23739.715882 eV Total energy + Delta-G solvation = -4166.871637 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.47432 -40.29975 -39.67856 -37.79367 -36.36841 -35.85692 -34.63897 -34.01211 -33.70999 -33.01838 -30.39765 -29.25065 -27.53165 -25.86946 -24.93532 -23.57733 -22.86889 -22.16388 -21.46481 -21.29633 -20.59609 -20.14218 -18.66531 -18.04766 -17.73153 -17.18606 -17.13689 -16.77009 -16.62055 -16.08199 -15.81981 -15.53633 -15.21166 -15.02588 -14.96369 -14.93444 -14.52506 -14.29790 -14.27061 -14.07292 -13.99675 -13.83385 -13.48455 -13.13649 -13.02187 -12.91839 -12.81217 -12.68271 -12.44994 -12.40549 -12.07845 -12.03232 -11.96546 -11.78274 -11.55444 -11.50453 -11.28268 -10.56138 -10.44716 -10.29730 -10.24372 -9.98262 -9.32447 -8.40594 -6.01883 0.99866 1.31710 1.36712 1.46127 1.50080 1.96542 2.13127 2.24149 2.79208 2.86135 3.16139 3.41075 3.46262 3.66120 3.72481 3.78600 3.97817 4.08606 4.10404 4.16863 4.19741 4.31611 4.38652 4.43254 4.44446 4.50445 4.53034 4.58343 4.66658 4.78007 4.80979 4.83554 4.85759 4.91786 4.97905 5.06332 5.11740 5.25728 5.30720 5.40334 5.52712 5.63856 5.71257 5.91203 5.92412 6.05789 6.41205 6.50253 6.60545 6.88757 7.17371 7.40526 7.97297 8.77060 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018348 B = 0.001492 C = 0.001408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.701138 B =18758.070449 C =19876.969214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C 0.066 3.934 4 H 0.053 0.947 5 C -0.143 4.143 6 C -0.143 4.143 7 C 0.065 3.935 8 H 0.134 0.866 9 C 0.494 3.506 10 O -0.580 6.580 11 N -0.710 5.710 12 C 0.152 3.848 13 C -0.162 4.162 14 C -0.126 4.126 15 C 0.089 3.911 16 N -0.689 5.689 17 C 0.062 3.938 18 C 0.447 3.553 19 O -0.616 6.616 20 N -0.590 5.590 21 C -0.331 4.331 22 H 0.054 0.946 23 C -0.014 4.014 24 N -0.935 5.935 25 Si 0.966 3.034 26 H -0.256 1.256 27 H -0.277 1.277 28 H -0.230 1.230 29 O -0.375 6.375 30 H 0.047 0.953 31 H 0.067 0.933 32 H 0.040 0.960 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.069 0.931 38 H 0.123 0.877 39 H 0.418 0.582 40 H 0.071 0.929 41 H 0.054 0.946 42 H 0.139 0.861 43 H 0.105 0.895 44 H 0.057 0.943 45 H 0.090 0.910 46 H 0.346 0.654 47 H 0.082 0.918 48 H 0.114 0.886 49 H 0.390 0.610 50 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.688 -20.450 13.697 30.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C 0.009 3.991 4 H 0.071 0.929 5 C -0.180 4.180 6 C -0.181 4.181 7 C 0.004 3.996 8 H 0.151 0.849 9 C 0.281 3.719 10 O -0.459 6.459 11 N -0.364 5.364 12 C 0.028 3.972 13 C -0.181 4.181 14 C -0.145 4.145 15 C -0.039 4.039 16 N -0.321 5.321 17 C -0.070 4.070 18 C 0.235 3.765 19 O -0.501 6.501 20 N -0.232 5.232 21 C -0.460 4.460 22 H 0.072 0.928 23 C -0.213 4.213 24 N -0.575 5.575 25 Si 0.786 3.214 26 H -0.180 1.180 27 H -0.202 1.202 28 H -0.154 1.154 29 O -0.293 6.293 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.060 0.940 33 H 0.113 0.887 34 H 0.095 0.905 35 H 0.120 0.880 36 H 0.117 0.883 37 H 0.088 0.912 38 H 0.141 0.859 39 H 0.255 0.745 40 H 0.089 0.911 41 H 0.073 0.927 42 H 0.157 0.843 43 H 0.123 0.877 44 H 0.075 0.925 45 H 0.108 0.892 46 H 0.164 0.836 47 H 0.100 0.900 48 H 0.132 0.868 49 H 0.226 0.774 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -19.921 -20.139 12.438 30.937 hybrid contribution 1.241 0.396 0.663 1.461 sum -18.680 -19.742 13.101 30.172 Atomic orbital electron populations 1.21720 0.96065 1.01908 1.01233 1.21664 0.96232 0.93582 1.03821 1.23295 0.95549 0.94193 0.86084 0.92868 1.23338 0.93808 0.97277 1.03593 1.23156 0.98929 0.98574 0.97414 1.22831 0.88312 0.86015 1.02486 0.84862 1.21682 0.85352 0.88721 0.76165 1.90695 1.21116 1.84872 1.49249 1.45870 1.17135 1.06585 1.66778 1.20256 0.96033 0.80184 1.00693 1.22802 0.98663 0.95689 1.00992 1.22854 0.96579 0.95853 0.99236 1.21102 0.90224 1.00211 0.92366 1.60009 1.12091 1.17609 1.42409 1.21642 0.90369 1.00731 0.94234 1.21048 0.83789 0.81919 0.89769 1.90547 1.79401 1.49055 1.31060 1.42027 1.18753 1.44669 1.17749 1.19014 0.99177 1.29188 0.98626 0.92780 1.26125 0.94304 0.98167 1.02712 1.69806 1.10318 1.41091 1.36330 0.85355 0.80511 0.78278 0.77302 1.17989 1.20195 1.15353 1.88506 1.42435 1.57702 1.40691 0.93352 0.91375 0.94040 0.88704 0.90540 0.88020 0.88329 0.91241 0.85875 0.74504 0.91068 0.92719 0.84343 0.87717 0.92488 0.89158 0.83570 0.90013 0.86806 0.77385 0.91153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.83 71.98 0.71 -1.44 16 2 C -0.12 -1.34 5.68 30.60 0.17 -1.16 16 3 C 0.07 1.00 3.43 31.26 0.11 1.11 16 4 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 5 C -0.14 -1.29 6.57 32.05 0.21 -1.08 16 6 C -0.14 -1.43 6.52 31.85 0.21 -1.22 16 7 C 0.06 0.96 3.95 30.32 0.12 1.08 16 8 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 9 C 0.49 10.36 7.03 87.66 0.62 10.98 16 10 O -0.58 -18.44 16.52 15.76 0.26 -18.18 16 11 N -0.71 -10.54 5.53 -466.80 -2.58 -13.12 16 12 C 0.15 2.53 6.11 85.63 0.52 3.05 16 13 C -0.16 -2.14 9.24 25.65 0.24 -1.90 16 14 C -0.13 -2.13 9.38 25.65 0.24 -1.89 16 15 C 0.09 1.57 6.13 85.56 0.52 2.09 16 16 N -0.69 -18.63 6.12 -521.96 -3.19 -21.82 16 17 C 0.06 1.76 6.17 85.56 0.53 2.28 16 18 C 0.45 19.56 7.82 87.66 0.69 20.25 16 19 O -0.62 -33.66 15.78 -3.07 -0.05 -33.71 16 20 N -0.59 -27.11 5.09 -306.98 -1.56 -28.67 16 21 C -0.33 -19.16 10.16 84.04 0.85 -18.30 16 22 H 0.05 3.75 7.39 -2.91 -0.02 3.73 16 23 C -0.01 -0.79 5.50 84.92 0.47 -0.32 16 24 N -0.93 -55.84 13.96 21.66 0.30 -55.54 16 25 Si 0.97 37.79 27.74 68.60 1.90 39.69 16 26 H -0.26 -9.38 7.11 99.48 0.71 -8.68 16 27 H -0.28 -10.85 7.11 99.48 0.71 -10.14 16 28 H -0.23 -7.51 6.52 99.48 0.65 -6.86 16 29 O -0.37 -7.75 9.90 -130.19 -1.29 -9.04 16 30 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.04 0.75 7.90 -2.39 -0.02 0.73 16 33 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.10 0.59 8.06 -2.39 -0.02 0.57 16 36 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 37 H 0.07 0.91 7.84 -2.38 -0.02 0.90 16 38 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.42 3.49 8.46 -92.71 -0.78 2.71 16 40 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.05 1.13 7.79 -2.38 -0.02 1.11 16 42 H 0.14 1.24 7.84 -2.91 -0.02 1.22 16 43 H 0.10 2.10 7.84 -2.91 -0.02 2.07 16 44 H 0.06 0.77 7.79 -2.39 -0.02 0.75 16 45 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.35 10.01 8.42 -89.70 -0.76 9.25 16 47 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 48 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 49 H 0.39 14.62 5.76 -92.71 -0.53 14.08 16 50 H 0.28 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -86.43 415.97 -1.18 -87.61 By element: Atomic # 1 Polarization: 40.43 SS G_CDS: -1.18 Total: 39.25 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: 6.20 Total: 13.52 kcal Atomic # 7 Polarization: -112.11 SS G_CDS: -7.03 Total: -119.14 kcal Atomic # 8 Polarization: -59.85 SS G_CDS: -1.08 Total: -60.93 kcal Atomic # 14 Polarization: 37.79 SS G_CDS: 1.90 Total: 39.69 kcal Total: -86.43 -1.18 -87.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699264001.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.022 kcal (2) G-P(sol) polarization free energy of solvation -86.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds