Wall clock time and date at job start Tue Mar 31 2020 23:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47094 * 2 1 4 4 H 1.09003 * 109.82088 * 305.56470 * 3 2 1 5 5 C 1.54378 * 109.83185 * 184.58879 * 3 2 1 6 6 C 1.55301 * 102.25529 * 219.13118 * 5 3 2 7 7 C 1.54945 * 100.94110 * 34.12933 * 6 5 3 8 8 H 1.08991 * 110.39584 * 82.51955 * 7 6 5 9 9 C 1.50704 * 110.31113 * 204.64620 * 7 6 5 10 10 O 1.21274 * 120.00655 * 112.16498 * 9 7 6 11 11 N 1.34777 * 119.99664 * 292.16655 * 9 7 6 12 12 C 1.46503 * 120.00026 * 180.02562 * 11 9 7 13 13 C 1.50699 * 109.47270 * 180.02562 * 12 11 9 14 14 C 1.31002 * 120.00597 * 127.15311 * 13 12 11 15 15 C 1.50702 * 119.99587 * 7.55627 * 14 13 12 16 16 N 1.46903 * 109.46779 * 127.00502 * 15 14 13 17 17 C 1.46902 * 110.99537 * 180.02562 * 16 15 14 18 18 C 1.50706 * 109.46663 * 180.02562 * 17 16 15 19 19 O 1.21286 * 119.99980 * 359.97438 * 18 17 16 20 20 N 1.34775 * 119.99693 * 179.97438 * 18 17 16 21 21 C 1.37099 * 120.00118 * 179.97438 * 20 18 17 22 22 H 1.08002 * 119.99679 * 0.02562 * 21 20 18 23 23 C 1.38942 * 120.00234 * 180.02562 * 21 20 18 24 24 N 1.31413 * 120.00070 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00015 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.46938 * 90.00061 * 25 23 21 27 27 H 1.48498 * 109.47381 * 209.99816 * 25 23 21 28 28 H 1.48504 * 109.47115 * 330.00008 * 25 23 21 29 29 O 1.43234 * 109.83156 * 66.44964 * 3 2 1 30 30 H 1.08996 * 109.47424 * 300.00327 * 1 2 3 31 31 H 1.09009 * 109.47231 * 60.00162 * 1 2 3 32 32 H 1.09004 * 109.47457 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46771 * 120.00118 * 2 1 3 34 34 H 1.08998 * 109.47159 * 240.00140 * 2 1 3 35 35 H 1.09009 * 110.84703 * 337.31778 * 5 3 2 36 36 H 1.09003 * 110.85328 * 100.93557 * 5 3 2 37 37 H 1.09004 * 111.12575 * 276.21159 * 6 5 3 38 38 H 1.09002 * 111.13097 * 152.04907 * 6 5 3 39 39 H 0.97000 * 120.00031 * 359.97438 * 11 9 7 40 40 H 1.09003 * 109.46622 * 299.99544 * 12 11 9 41 41 H 1.08994 * 109.47022 * 59.99703 * 12 11 9 42 42 H 1.08000 * 119.99801 * 307.15467 * 13 12 11 43 43 H 1.07996 * 120.00433 * 187.56255 * 14 13 12 44 44 H 1.08996 * 109.47303 * 247.00835 * 15 14 13 45 45 H 1.09008 * 109.47216 * 7.00840 * 15 14 13 46 46 H 1.00897 * 110.99898 * 56.05356 * 16 15 14 47 47 H 1.09000 * 109.47381 * 299.99924 * 17 16 15 48 48 H 1.08998 * 109.47124 * 60.00513 * 17 16 15 49 49 H 0.96997 * 120.00178 * 0.02562 * 20 18 17 50 50 H 0.97004 * 120.00216 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6009 1.9898 -0.8342 5 6 3.5794 1.4538 -0.1162 6 6 3.9741 2.6074 0.8457 7 6 2.8862 2.4635 1.9395 8 1 3.1674 1.6915 2.6557 9 6 2.6765 3.7787 2.6449 10 8 1.6319 4.3797 2.5096 11 7 3.6500 4.2870 3.4262 12 6 3.4460 5.5652 4.1124 13 6 4.6755 5.9068 4.9141 14 6 5.2544 7.0720 4.7611 15 6 4.5995 8.1334 3.9152 16 7 4.4886 9.3770 4.6892 17 6 3.8528 10.4366 3.8947 18 6 3.7571 11.6941 4.7197 19 8 4.1768 11.7063 5.8576 20 7 3.2052 12.8051 4.1930 21 6 3.1176 13.9491 4.9436 22 1 3.4913 13.9599 5.9569 23 6 2.5481 15.0943 4.4008 24 7 2.0930 15.0809 3.1681 25 14 2.4294 16.6531 5.4234 26 1 3.6545 17.4690 5.2260 27 1 1.2405 17.4347 4.9984 28 1 2.2992 16.2949 6.8587 29 8 1.6944 2.0801 1.2352 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 4.0008 0.5065 0.2207 36 1 3.8898 1.6764 -1.1371 37 1 3.9053 3.5747 0.3480 38 1 4.9703 2.4506 1.2593 39 1 4.4854 3.8061 3.5348 40 1 3.2638 6.3478 3.3760 41 1 2.5873 5.4866 4.7791 42 1 5.0794 5.1910 5.6147 43 1 6.2009 7.2719 5.2412 44 1 5.2027 8.3120 3.0250 45 1 3.6049 7.7997 3.6192 46 1 5.3911 9.6725 5.0301 47 1 4.4505 10.6313 3.0042 48 1 2.8530 10.1186 3.5990 49 1 2.8692 12.7953 3.2831 50 1 1.6957 15.8806 2.7890 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699264003.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:34 Heat of formation + Delta-G solvation = -102.693065 kcal Electronic energy + Delta-G solvation = -28096.356639 eV Core-core repulsion = 23930.826843 eV Total energy + Delta-G solvation = -4165.529797 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.74754 -39.08441 -38.32140 -36.98119 -35.06241 -34.01640 -33.88365 -33.07154 -32.41977 -31.19064 -29.49079 -27.85965 -26.21622 -24.82996 -24.26801 -23.15004 -22.41101 -21.53492 -20.57488 -19.54622 -18.93568 -18.00768 -17.79683 -17.10931 -16.56214 -16.26332 -15.91490 -15.59139 -15.30011 -15.02244 -14.61178 -14.60186 -14.44326 -14.26430 -13.70723 -13.69008 -13.63986 -13.58401 -13.37691 -12.97778 -12.77094 -12.49596 -12.38458 -12.32691 -11.94302 -11.84902 -11.53216 -11.48505 -11.47693 -11.33592 -11.17291 -11.02507 -10.84771 -10.37590 -10.36049 -10.20055 -9.82445 -9.55836 -9.49179 -9.14223 -8.44911 -8.03785 -7.93963 -6.39665 -3.80620 1.77099 2.31300 2.73781 3.19503 3.28126 3.34402 3.51569 3.87396 3.92650 4.14618 4.14880 4.24219 4.43152 4.48232 4.54495 4.60567 4.69589 4.76272 4.83505 4.90809 4.96083 5.11242 5.15343 5.18096 5.23555 5.27344 5.31723 5.33920 5.40844 5.51771 5.55013 5.56188 5.61246 5.71915 5.78968 5.81553 5.94694 5.99471 6.08527 6.27419 6.34651 6.51221 6.57823 7.17553 7.19713 7.57118 7.64035 7.95280 8.08142 8.63150 9.19684 9.56188 10.07549 10.78046 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018777 B = 0.001498 C = 0.001429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.816083 B =18686.386626 C =19595.042520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.132 4.132 3 C 0.075 3.925 4 H 0.084 0.916 5 C -0.150 4.150 6 C -0.146 4.146 7 C 0.065 3.935 8 H 0.095 0.905 9 C 0.509 3.491 10 O -0.516 6.516 11 N -0.724 5.724 12 C 0.141 3.859 13 C -0.183 4.183 14 C -0.110 4.110 15 C 0.069 3.931 16 N -0.663 5.663 17 C 0.050 3.950 18 C 0.441 3.559 19 O -0.583 6.583 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.901 5.901 25 Si 0.931 3.069 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.269 1.269 29 O -0.345 6.345 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.400 0.600 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.118 0.882 43 H 0.117 0.883 44 H 0.037 0.963 45 H 0.086 0.914 46 H 0.349 0.651 47 H 0.044 0.956 48 H 0.087 0.913 49 H 0.392 0.608 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.384 -32.115 -8.923 33.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.169 4.169 3 C 0.018 3.982 4 H 0.101 0.899 5 C -0.187 4.187 6 C -0.184 4.184 7 C 0.004 3.996 8 H 0.113 0.887 9 C 0.294 3.706 10 O -0.390 6.390 11 N -0.378 5.378 12 C 0.019 3.981 13 C -0.202 4.202 14 C -0.129 4.129 15 C -0.060 4.060 16 N -0.295 5.295 17 C -0.083 4.083 18 C 0.226 3.774 19 O -0.468 6.468 20 N -0.200 5.200 21 C -0.430 4.430 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.758 3.242 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 O -0.263 6.263 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.110 0.890 39 H 0.233 0.767 40 H 0.101 0.899 41 H 0.095 0.905 42 H 0.136 0.864 43 H 0.135 0.865 44 H 0.055 0.945 45 H 0.104 0.896 46 H 0.169 0.831 47 H 0.062 0.938 48 H 0.105 0.895 49 H 0.226 0.774 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.963 -31.638 -7.999 33.009 hybrid contribution 1.066 0.771 -0.690 1.486 sum 6.029 -30.867 -8.689 32.629 Atomic orbital electron populations 1.21720 0.95067 1.01449 1.02626 1.21904 0.97280 0.95403 1.02354 1.22909 0.94170 0.93726 0.87413 0.89855 1.23195 0.95325 0.99111 1.01093 1.23248 0.98726 1.00476 0.95912 1.22798 0.86866 0.94477 0.95491 0.88733 1.20464 0.83948 0.86837 0.79395 1.90764 1.26244 1.60615 1.61332 1.45908 1.18674 1.23885 1.49283 1.20520 0.96946 0.85009 0.95661 1.22651 0.97551 0.99115 1.00929 1.22851 0.98391 0.94154 0.97528 1.21295 1.00502 0.90039 0.94136 1.60092 1.29221 1.02558 1.37655 1.21700 1.00337 0.91687 0.94571 1.19780 0.84611 0.84572 0.88402 1.90519 1.52828 1.84369 1.19052 1.41860 1.52971 1.09545 1.15611 1.19711 1.37105 0.87534 0.98607 0.87904 1.25265 0.96821 0.99586 0.96262 1.69616 1.40505 1.30281 1.13876 0.85850 0.77665 0.80841 0.79878 1.20445 1.20919 1.19392 1.88583 1.27150 1.77715 1.32845 0.91794 0.92768 0.92882 0.91488 0.90957 0.89951 0.89481 0.89594 0.88973 0.76660 0.89914 0.90549 0.86387 0.86527 0.94492 0.89638 0.83120 0.93803 0.89464 0.77431 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.82 37.16 0.37 -0.64 16 2 C -0.13 -0.74 5.50 -26.73 -0.15 -0.89 16 3 C 0.08 0.52 3.52 -26.01 -0.09 0.43 16 4 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 5 C -0.15 -0.64 6.54 -24.79 -0.16 -0.81 16 6 C -0.15 -0.73 6.56 -24.48 -0.16 -0.89 16 7 C 0.06 0.50 3.86 -26.85 -0.10 0.40 16 8 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 9 C 0.51 5.48 7.17 -10.98 -0.08 5.40 16 10 O -0.52 -8.28 16.55 -13.76 -0.23 -8.51 16 11 N -0.72 -5.81 5.55 -61.47 -0.34 -6.15 16 12 C 0.14 1.40 5.76 -5.19 -0.03 1.37 16 13 C -0.18 -1.58 9.63 -36.03 -0.35 -1.93 16 14 C -0.11 -1.10 9.77 -36.03 -0.35 -1.45 16 15 C 0.07 0.84 5.77 -4.97 -0.03 0.81 16 16 N -0.66 -10.83 6.11 -116.33 -0.71 -11.54 16 17 C 0.05 0.90 6.17 -4.97 -0.03 0.87 16 18 C 0.44 10.63 7.82 -10.98 -0.09 10.54 16 19 O -0.58 -16.10 15.78 5.55 0.09 -16.02 16 20 N -0.56 -14.55 5.29 -10.96 -0.06 -14.61 16 21 C -0.30 -8.50 9.68 -14.94 -0.14 -8.65 16 22 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -24.86 13.05 55.50 0.72 -24.13 16 25 Si 0.93 21.30 29.55 -169.99 -5.02 16.28 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 29 O -0.34 -3.56 9.89 -54.55 -0.54 -4.10 16 30 H 0.06 0.54 7.88 -51.93 -0.41 0.13 16 31 H 0.05 0.35 8.14 -51.92 -0.42 -0.07 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.08 0.25 7.85 -51.92 -0.41 -0.16 16 36 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.09 0.53 8.05 -51.93 -0.42 0.12 16 38 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.40 1.85 8.46 -40.82 -0.35 1.51 16 40 H 0.08 0.94 5.30 -51.93 -0.28 0.67 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 43 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 44 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.09 1.07 5.30 -51.92 -0.27 0.80 16 46 H 0.35 5.75 8.42 -39.29 -0.33 5.42 16 47 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 49 H 0.39 9.69 7.90 -40.82 -0.32 9.37 16 50 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 414.61 15.07 6.25 6.25 Total: -1.00 -35.89 414.61 -9.55 -45.44 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: -8.21 Total: 12.01 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: -1.49 Total: 5.07 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: -0.39 Total: -56.43 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -0.68 Total: -28.62 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -35.89 -9.55 -45.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699264003.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.256 kcal (2) G-P(sol) polarization free energy of solvation -35.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds