Wall clock time and date at job start Tue Mar 31 2020 23:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47094 * 2 1 4 4 H 1.09003 * 109.82088 * 305.56470 * 3 2 1 5 5 C 1.54378 * 109.83185 * 184.58879 * 3 2 1 6 6 C 1.55301 * 102.25529 * 219.13118 * 5 3 2 7 7 C 1.54945 * 100.94110 * 34.12933 * 6 5 3 8 8 H 1.08991 * 110.39584 * 82.51955 * 7 6 5 9 9 C 1.50704 * 110.31113 * 204.64620 * 7 6 5 10 10 O 1.21274 * 120.00655 * 112.16498 * 9 7 6 11 11 N 1.34777 * 119.99664 * 292.16655 * 9 7 6 12 12 C 1.46503 * 120.00026 * 180.02562 * 11 9 7 13 13 C 1.50699 * 109.47270 * 180.02562 * 12 11 9 14 14 C 1.31002 * 120.00597 * 127.15311 * 13 12 11 15 15 C 1.50702 * 119.99587 * 7.55627 * 14 13 12 16 16 N 1.46903 * 109.46779 * 127.00502 * 15 14 13 17 17 C 1.46902 * 110.99537 * 180.02562 * 16 15 14 18 18 C 1.50706 * 109.46663 * 180.02562 * 17 16 15 19 19 O 1.21286 * 119.99980 * 359.97438 * 18 17 16 20 20 N 1.34775 * 119.99693 * 179.97438 * 18 17 16 21 21 C 1.37099 * 120.00118 * 179.97438 * 20 18 17 22 22 H 1.08002 * 119.99679 * 0.02562 * 21 20 18 23 23 C 1.38942 * 120.00234 * 180.02562 * 21 20 18 24 24 N 1.31413 * 120.00070 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00015 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.46938 * 90.00061 * 25 23 21 27 27 H 1.48498 * 109.47381 * 209.99816 * 25 23 21 28 28 H 1.48504 * 109.47115 * 330.00008 * 25 23 21 29 29 O 1.43234 * 109.83156 * 66.44964 * 3 2 1 30 30 H 1.08996 * 109.47424 * 300.00327 * 1 2 3 31 31 H 1.09009 * 109.47231 * 60.00162 * 1 2 3 32 32 H 1.09004 * 109.47457 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46771 * 120.00118 * 2 1 3 34 34 H 1.08998 * 109.47159 * 240.00140 * 2 1 3 35 35 H 1.09009 * 110.84703 * 337.31778 * 5 3 2 36 36 H 1.09003 * 110.85328 * 100.93557 * 5 3 2 37 37 H 1.09004 * 111.12575 * 276.21159 * 6 5 3 38 38 H 1.09002 * 111.13097 * 152.04907 * 6 5 3 39 39 H 0.97000 * 120.00031 * 359.97438 * 11 9 7 40 40 H 1.09003 * 109.46622 * 299.99544 * 12 11 9 41 41 H 1.08994 * 109.47022 * 59.99703 * 12 11 9 42 42 H 1.08000 * 119.99801 * 307.15467 * 13 12 11 43 43 H 1.07996 * 120.00433 * 187.56255 * 14 13 12 44 44 H 1.08996 * 109.47303 * 247.00835 * 15 14 13 45 45 H 1.09008 * 109.47216 * 7.00840 * 15 14 13 46 46 H 1.00897 * 110.99898 * 56.05356 * 16 15 14 47 47 H 1.09000 * 109.47381 * 299.99924 * 17 16 15 48 48 H 1.08998 * 109.47124 * 60.00513 * 17 16 15 49 49 H 0.96997 * 120.00178 * 0.02562 * 20 18 17 50 50 H 0.97004 * 120.00216 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6009 1.9898 -0.8342 5 6 3.5794 1.4538 -0.1162 6 6 3.9741 2.6074 0.8457 7 6 2.8862 2.4635 1.9395 8 1 3.1674 1.6915 2.6557 9 6 2.6765 3.7787 2.6449 10 8 1.6319 4.3797 2.5096 11 7 3.6500 4.2870 3.4262 12 6 3.4460 5.5652 4.1124 13 6 4.6755 5.9068 4.9141 14 6 5.2544 7.0720 4.7611 15 6 4.5995 8.1334 3.9152 16 7 4.4886 9.3770 4.6892 17 6 3.8528 10.4366 3.8947 18 6 3.7571 11.6941 4.7197 19 8 4.1768 11.7063 5.8576 20 7 3.2052 12.8051 4.1930 21 6 3.1176 13.9491 4.9436 22 1 3.4913 13.9599 5.9569 23 6 2.5481 15.0943 4.4008 24 7 2.0930 15.0809 3.1681 25 14 2.4294 16.6531 5.4234 26 1 3.6545 17.4690 5.2260 27 1 1.2405 17.4347 4.9984 28 1 2.2992 16.2949 6.8587 29 8 1.6944 2.0801 1.2352 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 4.0008 0.5065 0.2207 36 1 3.8898 1.6764 -1.1371 37 1 3.9053 3.5747 0.3480 38 1 4.9703 2.4506 1.2593 39 1 4.4854 3.8061 3.5348 40 1 3.2638 6.3478 3.3760 41 1 2.5873 5.4866 4.7791 42 1 5.0794 5.1910 5.6147 43 1 6.2009 7.2719 5.2412 44 1 5.2027 8.3120 3.0250 45 1 3.6049 7.7997 3.6192 46 1 5.3911 9.6725 5.0301 47 1 4.4505 10.6313 3.0042 48 1 2.8530 10.1186 3.5990 49 1 2.8692 12.7953 3.2831 50 1 1.6957 15.8806 2.7890 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699264003.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:33 Heat of formation + Delta-G solvation = -130.215313 kcal Electronic energy + Delta-G solvation = -28097.550094 eV Core-core repulsion = 23930.826843 eV Total energy + Delta-G solvation = -4166.723251 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.42111 -40.20338 -39.77972 -38.03810 -36.28821 -35.77482 -34.54386 -33.99386 -33.27198 -32.98701 -30.16562 -29.09987 -27.30041 -26.32818 -24.93163 -24.48593 -22.83816 -22.10805 -21.28981 -21.19240 -20.09051 -19.75605 -18.63617 -18.00434 -17.51846 -17.31257 -16.91618 -16.79834 -16.46035 -16.25603 -15.92957 -15.80648 -15.30680 -15.23515 -15.11204 -14.87312 -14.38655 -14.29665 -14.10269 -14.01779 -13.91346 -13.53127 -13.44766 -13.22162 -13.05669 -12.96694 -12.77835 -12.74263 -12.43133 -12.41469 -12.12765 -11.89218 -11.80144 -11.69698 -11.59955 -11.52019 -11.09342 -10.51766 -10.38259 -10.35387 -10.03876 -9.98405 -9.28725 -8.47885 -5.97243 1.00830 1.37526 1.41322 1.51253 1.54592 2.02504 2.05578 2.28930 2.95901 3.01043 3.19104 3.43822 3.59230 3.67169 3.73870 3.78279 4.03117 4.04570 4.10790 4.22165 4.23098 4.29235 4.32857 4.42671 4.45544 4.46223 4.52696 4.54718 4.67391 4.75745 4.83004 4.85750 4.95251 4.97122 4.98621 5.07890 5.13508 5.30893 5.33790 5.39477 5.41458 5.56742 5.79114 5.87071 5.99423 6.06322 6.38692 6.54133 6.57913 7.10540 7.21193 7.53702 8.08604 8.69499 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018777 B = 0.001498 C = 0.001429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.816083 B =18686.386626 C =19595.042520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C 0.065 3.935 4 H 0.069 0.931 5 C -0.140 4.140 6 C -0.140 4.140 7 C 0.063 3.937 8 H 0.124 0.876 9 C 0.504 3.496 10 O -0.581 6.581 11 N -0.703 5.703 12 C 0.139 3.861 13 C -0.161 4.161 14 C -0.124 4.124 15 C 0.070 3.930 16 N -0.678 5.678 17 C 0.064 3.936 18 C 0.437 3.563 19 O -0.622 6.622 20 N -0.573 5.573 21 C -0.336 4.336 22 H 0.080 0.920 23 C -0.013 4.013 24 N -0.921 5.921 25 Si 0.995 3.005 26 H -0.269 1.269 27 H -0.271 1.271 28 H -0.273 1.273 29 O -0.383 6.383 30 H 0.037 0.963 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.068 0.932 38 H 0.126 0.874 39 H 0.420 0.580 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.147 0.853 43 H 0.131 0.869 44 H 0.051 0.949 45 H 0.080 0.920 46 H 0.348 0.652 47 H 0.069 0.931 48 H 0.098 0.902 49 H 0.396 0.604 50 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.371 -33.933 -9.421 36.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C 0.007 3.993 4 H 0.087 0.913 5 C -0.177 4.177 6 C -0.177 4.177 7 C 0.002 3.998 8 H 0.142 0.858 9 C 0.290 3.710 10 O -0.459 6.459 11 N -0.357 5.357 12 C 0.016 3.984 13 C -0.180 4.180 14 C -0.143 4.143 15 C -0.057 4.057 16 N -0.311 5.311 17 C -0.069 4.069 18 C 0.225 3.775 19 O -0.509 6.509 20 N -0.210 5.210 21 C -0.466 4.466 22 H 0.098 0.902 23 C -0.213 4.213 24 N -0.561 5.561 25 Si 0.819 3.181 26 H -0.194 1.194 27 H -0.196 1.196 28 H -0.198 1.198 29 O -0.303 6.303 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.112 0.888 35 H 0.123 0.877 36 H 0.117 0.883 37 H 0.087 0.913 38 H 0.145 0.855 39 H 0.258 0.742 40 H 0.084 0.916 41 H 0.076 0.924 42 H 0.165 0.835 43 H 0.149 0.851 44 H 0.069 0.931 45 H 0.098 0.902 46 H 0.167 0.833 47 H 0.087 0.913 48 H 0.116 0.884 49 H 0.230 0.770 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.000 -33.498 -8.520 35.266 hybrid contribution 0.416 1.265 -0.543 1.438 sum 7.416 -32.233 -9.064 34.294 Atomic orbital electron populations 1.21729 0.96375 1.01726 1.01213 1.21897 0.96124 0.94828 1.03576 1.23090 0.96359 0.93926 0.85878 0.91278 1.23201 0.92973 0.99811 1.01743 1.23285 0.99373 1.00029 0.95042 1.23018 0.87102 0.93098 0.96533 0.85838 1.21203 0.83197 0.87590 0.78993 1.90732 1.28910 1.62611 1.63694 1.45713 1.19015 1.23090 1.47899 1.20409 0.97230 0.85487 0.95289 1.22740 0.95929 0.99208 1.00091 1.22833 0.99326 0.93904 0.98267 1.21323 1.00871 0.88795 0.94748 1.60079 1.29223 1.03217 1.38597 1.21543 1.01802 0.89289 0.94255 1.20826 0.82613 0.85713 0.88366 1.90482 1.54035 1.85289 1.21061 1.41938 1.53644 1.09733 1.15664 1.19699 1.39120 0.89371 0.98401 0.90204 1.26074 0.95734 1.02094 0.97379 1.69680 1.40295 1.31359 1.14803 0.84897 0.78284 0.76992 0.77967 1.19406 1.19582 1.19783 1.88555 1.29183 1.78272 1.34244 0.94331 0.93076 0.91712 0.90983 0.88780 0.87741 0.88259 0.91289 0.85547 0.74219 0.91553 0.92364 0.83517 0.85073 0.93140 0.90239 0.83339 0.91310 0.88368 0.77001 0.91270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.82 71.98 0.71 -1.34 16 2 C -0.13 -1.25 5.50 30.59 0.17 -1.08 16 3 C 0.06 0.84 3.52 31.06 0.11 0.95 16 4 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 5 C -0.14 -0.82 6.54 31.85 0.21 -0.61 16 6 C -0.14 -1.05 6.56 32.05 0.21 -0.84 16 7 C 0.06 0.89 3.86 30.51 0.12 1.01 16 8 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 9 C 0.50 10.79 7.17 87.66 0.63 11.42 16 10 O -0.58 -19.70 16.55 15.46 0.26 -19.45 16 11 N -0.70 -10.32 5.55 -466.79 -2.59 -12.91 16 12 C 0.14 2.68 5.76 85.63 0.49 3.17 16 13 C -0.16 -2.40 9.63 25.64 0.25 -2.15 16 14 C -0.12 -2.23 9.77 25.65 0.25 -1.98 16 15 C 0.07 1.64 5.77 85.56 0.49 2.14 16 16 N -0.68 -21.77 6.11 -521.95 -3.19 -24.96 16 17 C 0.06 2.27 6.17 85.56 0.53 2.79 16 18 C 0.44 21.43 7.82 87.66 0.69 22.12 16 19 O -0.62 -35.20 15.78 -3.05 -0.05 -35.25 16 20 N -0.57 -30.21 5.29 -306.99 -1.62 -31.84 16 21 C -0.34 -19.52 9.68 84.04 0.81 -18.71 16 22 H 0.08 4.92 7.16 -2.91 -0.02 4.89 16 23 C -0.01 -0.71 5.50 84.92 0.47 -0.24 16 24 N -0.92 -50.62 13.05 21.66 0.28 -50.33 16 25 Si 1.00 43.59 29.55 68.60 2.03 45.62 16 26 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 27 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 28 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 29 O -0.38 -8.00 9.89 -130.50 -1.29 -9.29 16 30 H 0.04 0.70 7.88 -2.39 -0.02 0.68 16 31 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.09 0.52 8.14 -2.39 -0.02 0.51 16 35 H 0.10 0.19 7.85 -2.38 -0.02 0.17 16 36 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 37 H 0.07 0.77 8.05 -2.39 -0.02 0.75 16 38 H 0.13 0.08 8.14 -2.39 -0.02 0.06 16 39 H 0.42 2.64 8.46 -92.71 -0.78 1.86 16 40 H 0.07 1.53 5.30 -2.39 -0.01 1.52 16 41 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.15 1.42 8.06 -2.91 -0.02 1.39 16 43 H 0.13 2.02 8.06 -2.91 -0.02 2.00 16 44 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.08 1.96 5.30 -2.38 -0.01 1.95 16 46 H 0.35 11.28 8.42 -89.70 -0.76 10.52 16 47 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 48 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 49 H 0.40 19.90 7.90 -92.71 -0.73 19.17 16 50 H 0.28 14.28 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -81.87 414.61 -1.35 -83.22 By element: Atomic # 1 Polarization: 39.85 SS G_CDS: -1.30 Total: 38.55 kcal Atomic # 6 Polarization: 10.52 SS G_CDS: 6.13 Total: 16.65 kcal Atomic # 7 Polarization: -112.92 SS G_CDS: -7.12 Total: -120.04 kcal Atomic # 8 Polarization: -62.91 SS G_CDS: -1.08 Total: -63.99 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -81.87 -1.35 -83.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699264003.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.992 kcal (2) G-P(sol) polarization free energy of solvation -81.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds