Wall clock time and date at job start Tue Mar 31 2020 23:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50707 * 119.99733 * 2 1 4 4 H 1.08996 * 109.46729 * 0.02562 * 3 2 1 5 5 C 1.52995 * 109.46714 * 120.00442 * 3 2 1 6 6 C 1.53002 * 109.47459 * 294.44946 * 5 3 2 7 7 C 1.52993 * 109.47067 * 240.00471 * 3 2 1 8 8 C 1.50699 * 109.47366 * 66.14037 * 7 3 2 9 9 O 1.21282 * 120.00013 * 5.77457 * 8 7 3 10 10 N 1.34779 * 119.99954 * 185.78238 * 8 7 3 11 11 C 1.46500 * 119.99751 * 179.72029 * 10 8 7 12 12 C 1.52994 * 109.47184 * 179.97438 * 11 10 8 13 13 O 1.42905 * 112.93565 * 53.43477 * 12 11 10 14 14 C 1.53935 * 113.73817 * 281.73041 * 12 11 10 15 15 N 1.47955 * 86.18369 * 221.92053 * 14 12 11 16 16 C 1.46891 * 111.00226 * 137.58066 * 15 14 12 17 17 C 1.50698 * 109.47377 * 70.64210 * 16 15 14 18 18 O 1.21292 * 119.99805 * 359.97438 * 17 16 15 19 19 N 1.34778 * 120.00279 * 180.02562 * 17 16 15 20 20 C 1.37098 * 119.99779 * 179.97438 * 19 17 16 21 21 H 1.08001 * 120.00527 * 0.02562 * 20 19 17 22 22 C 1.38952 * 120.00002 * 179.97438 * 20 19 17 23 23 N 1.31412 * 119.99768 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00286 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46612 * 90.00395 * 24 22 20 26 26 H 1.48499 * 109.47234 * 210.00078 * 24 22 20 27 27 H 1.48495 * 109.46900 * 330.00471 * 24 22 20 28 28 C 1.47964 * 90.76646 * 24.68546 * 15 14 12 29 29 H 1.08000 * 120.00128 * 359.97438 * 1 2 3 30 30 H 1.08002 * 119.99914 * 179.97438 * 1 2 3 31 31 H 1.08000 * 120.00128 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.47256 * 54.45081 * 5 3 2 33 33 H 1.09002 * 109.46902 * 174.45341 * 5 3 2 34 34 H 1.08997 * 109.47488 * 185.46255 * 6 5 3 35 35 H 1.09003 * 109.46961 * 305.46650 * 6 5 3 36 36 H 1.08998 * 109.47049 * 65.45857 * 6 5 3 37 37 H 1.09002 * 109.47568 * 306.13581 * 7 3 2 38 38 H 1.09001 * 109.47099 * 186.13974 * 7 3 2 39 39 H 0.96990 * 120.00083 * 359.97438 * 10 8 7 40 40 H 1.09001 * 109.47338 * 299.99694 * 11 10 8 41 41 H 1.09005 * 109.47238 * 60.00199 * 11 10 8 42 42 H 0.96697 * 113.99969 * 309.66345 * 13 12 11 43 43 H 1.09000 * 113.75807 * 336.23921 * 14 12 11 44 44 H 1.09002 * 113.76037 * 107.59748 * 14 12 11 45 45 H 1.09004 * 109.47662 * 190.63535 * 16 15 14 46 46 H 1.09000 * 109.47459 * 310.64038 * 16 15 14 47 47 H 0.96996 * 120.00055 * 359.97438 * 19 17 16 48 48 H 0.97005 * 120.00157 * 179.97438 * 23 22 20 49 49 H 1.09000 * 113.76265 * 220.99513 * 28 15 14 50 50 H 1.08997 * 113.75567 * 89.62520 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 1.3551 2.1336 0.0005 5 6 2.9431 1.3861 1.2492 6 6 2.0563 1.4444 2.4946 7 6 2.9429 1.3863 -1.2492 8 6 2.0692 1.4584 -2.4750 9 8 0.8657 1.5519 -2.3571 10 7 2.6251 1.4190 -3.7021 11 6 1.7752 1.4829 -4.8937 12 6 2.6495 1.4207 -6.1476 13 8 3.5314 0.2963 -6.1565 14 6 3.3385 2.7541 -6.4895 15 7 2.9892 2.4602 -7.8968 16 6 2.4984 3.6644 -8.5800 17 6 3.6415 4.6234 -8.7911 18 8 4.7554 4.3325 -8.4095 19 7 3.4258 5.8048 -9.4030 20 6 4.4657 6.6774 -9.5945 21 1 5.4578 6.4181 -9.2555 22 6 4.2435 7.8951 -10.2258 23 7 3.0365 8.2105 -10.6388 24 14 5.6605 9.0839 -10.4875 25 1 6.3049 8.8054 -11.7961 26 1 5.1466 10.4770 -10.4752 27 1 6.6565 8.9140 -9.3992 28 6 1.8651 1.6031 -7.4596 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 3.5837 0.5057 1.3002 33 1 3.5610 2.2828 1.2009 34 1 2.6779 1.5995 3.3764 35 1 1.3492 2.2685 2.3989 36 1 1.5098 0.5068 2.5957 37 1 3.5762 0.5009 -1.3060 38 1 3.5684 2.2774 -1.1960 39 1 3.5876 1.3445 -3.7963 40 1 1.0823 0.6415 -4.8913 41 1 1.2129 2.4167 -4.8892 42 1 4.0475 0.1949 -5.3450 43 1 2.8291 3.6283 -6.0839 44 1 4.4109 2.7570 -6.2945 45 1 2.0739 3.3872 -9.5450 46 1 1.7318 4.1415 -7.9694 47 1 2.5349 6.0375 -9.7078 48 1 2.8813 9.0607 -11.0793 49 1 1.7603 0.6863 -8.0398 50 1 0.9247 2.1406 -7.3378 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699920035.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:45 Heat of formation + Delta-G solvation = -72.365538 kcal Electronic energy + Delta-G solvation = -29253.101345 eV Core-core repulsion = 25088.886648 eV Total energy + Delta-G solvation = -4164.214696 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.77345 -39.83195 -37.98326 -37.08681 -35.80474 -34.42891 -33.89876 -32.06027 -31.34434 -31.10131 -30.00886 -27.51843 -26.17982 -25.23821 -24.47389 -22.48677 -21.95361 -20.85272 -20.01249 -19.83139 -19.21846 -17.99185 -17.72179 -16.66453 -16.43827 -15.98208 -15.77733 -15.44610 -15.31251 -15.12749 -14.80275 -14.56349 -14.35785 -14.08972 -13.87934 -13.73057 -13.59225 -13.28685 -13.10242 -12.97230 -12.47973 -12.36467 -12.17634 -12.01664 -11.89636 -11.69118 -11.52145 -11.50994 -11.29798 -11.15624 -11.03759 -10.81954 -10.75084 -10.41211 -10.24101 -10.09634 -9.96145 -9.52286 -9.47966 -9.30679 -8.67767 -8.25320 -7.98334 -6.43498 -3.84411 2.17786 2.44513 2.82293 3.16338 3.25017 3.30528 3.66701 3.87350 3.98283 4.19496 4.22038 4.38465 4.41279 4.47937 4.54295 4.84432 4.89172 4.91901 5.02696 5.07881 5.10529 5.16077 5.22256 5.26855 5.35193 5.44226 5.47369 5.53401 5.57446 5.63160 5.63755 5.67854 5.74142 5.76800 5.82825 5.89161 5.96831 6.06997 6.12578 6.23065 6.48776 6.56834 6.68013 7.10587 7.16720 7.41960 7.53254 7.97843 8.03550 8.59256 9.15917 9.51949 10.03555 10.74203 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014934 B = 0.001967 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.425238 B =14232.667780 C =15265.508027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.155 4.155 3 C -0.045 4.045 4 H 0.083 0.917 5 C -0.117 4.117 6 C -0.151 4.151 7 C -0.136 4.136 8 C 0.514 3.486 9 O -0.530 6.530 10 N -0.733 5.733 11 C 0.102 3.898 12 C 0.088 3.912 13 O -0.522 6.522 14 C 0.000 4.000 15 N -0.440 5.440 16 C 0.007 3.993 17 C 0.443 3.557 18 O -0.579 6.579 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.017 3.983 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.398 0.602 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.371 0.629 43 H 0.073 0.927 44 H 0.099 0.901 45 H 0.093 0.907 46 H 0.054 0.946 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.100 0.900 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.489 -15.416 20.959 26.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.173 4.173 3 C -0.064 4.064 4 H 0.102 0.898 5 C -0.154 4.154 6 C -0.208 4.208 7 C -0.176 4.176 8 C 0.300 3.700 9 O -0.406 6.406 10 N -0.387 5.387 11 C -0.022 4.022 12 C 0.045 3.955 13 O -0.326 6.326 14 C -0.129 4.129 15 N -0.163 5.163 16 C -0.125 4.125 17 C 0.229 3.771 18 O -0.463 6.463 19 N -0.201 5.201 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.112 4.112 29 H 0.115 0.885 30 H 0.108 0.892 31 H 0.120 0.880 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.111 0.889 38 H 0.116 0.884 39 H 0.232 0.768 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.218 0.782 43 H 0.091 0.909 44 H 0.117 0.883 45 H 0.111 0.889 46 H 0.072 0.928 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.118 0.882 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.447 -15.675 20.126 25.895 hybrid contribution 0.115 1.317 0.344 1.366 sum -4.332 -14.358 20.470 25.376 Atomic orbital electron populations 1.23752 0.95980 1.01442 0.99081 1.22677 0.95998 0.97138 1.01479 1.20180 0.96642 0.97139 0.92466 0.89831 1.21546 0.97853 1.02059 0.93954 1.21754 0.99810 1.02103 0.97156 1.21739 0.98716 1.04563 0.92555 1.20690 0.89204 0.75711 0.84372 1.90716 1.15038 1.48256 1.86561 1.45951 1.10620 1.76251 1.05831 1.21990 0.93652 1.03325 0.83245 1.23053 0.91111 0.87605 0.93706 1.86636 1.57150 1.46379 1.42436 1.24511 1.03239 0.95221 0.89931 1.68465 1.23210 1.12187 1.12414 1.22511 0.96877 0.92205 1.00893 1.19652 0.89581 0.83334 0.84559 1.90519 1.24432 1.76564 1.54787 1.41869 1.11745 1.14850 1.51598 1.19691 0.91208 0.96375 1.35583 0.87945 1.25272 0.97657 0.98126 0.96933 1.69613 1.20448 1.24191 1.40019 0.85851 0.80548 0.78926 0.78922 1.20365 1.20924 1.19449 1.24123 0.94249 0.99784 0.93048 0.88516 0.89174 0.88041 0.91796 0.91693 0.92862 0.92721 0.92524 0.88853 0.88393 0.76767 0.90458 0.90247 0.78187 0.90868 0.88293 0.88915 0.92759 0.77486 0.91856 0.88163 0.89917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 13.42 29.02 0.39 -1.08 16 2 C -0.15 -1.24 7.00 -36.02 -0.25 -1.49 16 3 C -0.05 -0.33 1.80 -91.77 -0.17 -0.50 16 4 H 0.08 0.76 7.47 -51.93 -0.39 0.37 16 5 C -0.12 -0.67 5.39 -26.73 -0.14 -0.81 16 6 C -0.15 -0.90 9.64 37.16 0.36 -0.54 16 7 C -0.14 -0.88 5.15 -27.89 -0.14 -1.02 16 8 C 0.51 4.93 7.52 -10.99 -0.08 4.85 16 9 O -0.53 -7.00 14.47 5.56 0.08 -6.92 16 10 N -0.73 -6.08 5.34 -60.29 -0.32 -6.40 16 11 C 0.10 1.02 5.28 -4.04 -0.02 1.00 16 12 C 0.09 1.00 1.52 -89.69 -0.14 0.87 16 13 O -0.52 -6.04 13.50 -35.23 -0.48 -6.52 16 14 C 0.00 0.00 6.16 -2.77 -0.02 -0.02 16 15 N -0.44 -7.38 5.95 -239.64 -1.43 -8.81 16 16 C 0.01 0.13 5.31 -4.98 -0.03 0.10 16 17 C 0.44 10.52 7.59 -10.99 -0.08 10.44 16 18 O -0.58 -15.71 15.12 5.55 0.08 -15.62 16 19 N -0.56 -14.33 5.29 -10.96 -0.06 -14.39 16 20 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 21 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.53 13.05 55.50 0.72 -23.81 16 24 Si 0.93 21.05 29.55 -169.99 -5.02 16.03 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 28 C 0.02 0.22 7.38 -2.76 -0.02 0.20 16 29 H 0.10 0.95 7.83 -52.49 -0.41 0.53 16 30 H 0.09 0.71 8.06 -52.49 -0.42 0.29 16 31 H 0.10 0.72 8.06 -52.49 -0.42 0.29 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 35 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.35 7.58 -51.93 -0.39 -0.04 16 37 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.40 2.34 7.30 -40.82 -0.30 2.05 16 40 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.08 0.86 8.04 -51.93 -0.42 0.44 16 42 H 0.37 2.75 7.60 45.56 0.35 3.10 16 43 H 0.07 1.08 7.67 -51.93 -0.40 0.68 16 44 H 0.10 1.62 8.09 -51.93 -0.42 1.20 16 45 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 46 H 0.05 0.85 7.69 -51.93 -0.40 0.45 16 47 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 48 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 49 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 50 H 0.08 0.87 7.75 -51.93 -0.40 0.47 16 LS Contribution 411.70 15.07 6.20 6.20 Total: -1.00 -34.90 411.70 -8.46 -43.36 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: -7.67 Total: 12.90 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -0.59 Total: 3.98 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: -1.08 Total: -53.41 kcal Atomic # 8 Polarization: -28.75 SS G_CDS: -0.31 Total: -29.06 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.90 -8.46 -43.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699920035.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.008 kcal (2) G-P(sol) polarization free energy of solvation -34.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds