Wall clock time and date at job start Tue Mar 31 2020 23:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50707 * 119.99733 * 2 1 4 4 H 1.08996 * 109.46729 * 0.02562 * 3 2 1 5 5 C 1.52995 * 109.46714 * 120.00442 * 3 2 1 6 6 C 1.53002 * 109.47459 * 294.44946 * 5 3 2 7 7 C 1.52993 * 109.47067 * 240.00471 * 3 2 1 8 8 C 1.50699 * 109.47366 * 66.14037 * 7 3 2 9 9 O 1.21282 * 120.00013 * 5.77457 * 8 7 3 10 10 N 1.34779 * 119.99954 * 185.78238 * 8 7 3 11 11 C 1.46500 * 119.99751 * 179.72029 * 10 8 7 12 12 C 1.52994 * 109.47184 * 179.97438 * 11 10 8 13 13 O 1.42905 * 112.93565 * 53.43477 * 12 11 10 14 14 C 1.53935 * 113.73817 * 281.73041 * 12 11 10 15 15 N 1.47955 * 86.18369 * 221.92053 * 14 12 11 16 16 C 1.46891 * 111.00226 * 137.58066 * 15 14 12 17 17 C 1.50698 * 109.47377 * 70.64210 * 16 15 14 18 18 O 1.21292 * 119.99805 * 359.97438 * 17 16 15 19 19 N 1.34778 * 120.00279 * 180.02562 * 17 16 15 20 20 C 1.37098 * 119.99779 * 179.97438 * 19 17 16 21 21 H 1.08001 * 120.00527 * 0.02562 * 20 19 17 22 22 C 1.38952 * 120.00002 * 179.97438 * 20 19 17 23 23 N 1.31412 * 119.99768 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00286 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46612 * 90.00395 * 24 22 20 26 26 H 1.48499 * 109.47234 * 210.00078 * 24 22 20 27 27 H 1.48495 * 109.46900 * 330.00471 * 24 22 20 28 28 C 1.47964 * 90.76646 * 24.68546 * 15 14 12 29 29 H 1.08000 * 120.00128 * 359.97438 * 1 2 3 30 30 H 1.08002 * 119.99914 * 179.97438 * 1 2 3 31 31 H 1.08000 * 120.00128 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.47256 * 54.45081 * 5 3 2 33 33 H 1.09002 * 109.46902 * 174.45341 * 5 3 2 34 34 H 1.08997 * 109.47488 * 185.46255 * 6 5 3 35 35 H 1.09003 * 109.46961 * 305.46650 * 6 5 3 36 36 H 1.08998 * 109.47049 * 65.45857 * 6 5 3 37 37 H 1.09002 * 109.47568 * 306.13581 * 7 3 2 38 38 H 1.09001 * 109.47099 * 186.13974 * 7 3 2 39 39 H 0.96990 * 120.00083 * 359.97438 * 10 8 7 40 40 H 1.09001 * 109.47338 * 299.99694 * 11 10 8 41 41 H 1.09005 * 109.47238 * 60.00199 * 11 10 8 42 42 H 0.96697 * 113.99969 * 309.66345 * 13 12 11 43 43 H 1.09000 * 113.75807 * 336.23921 * 14 12 11 44 44 H 1.09002 * 113.76037 * 107.59748 * 14 12 11 45 45 H 1.09004 * 109.47662 * 190.63535 * 16 15 14 46 46 H 1.09000 * 109.47459 * 310.64038 * 16 15 14 47 47 H 0.96996 * 120.00055 * 359.97438 * 19 17 16 48 48 H 0.97005 * 120.00157 * 179.97438 * 23 22 20 49 49 H 1.09000 * 113.76265 * 220.99513 * 28 15 14 50 50 H 1.08997 * 113.75567 * 89.62520 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 1.3551 2.1336 0.0005 5 6 2.9431 1.3861 1.2492 6 6 2.0563 1.4444 2.4946 7 6 2.9429 1.3863 -1.2492 8 6 2.0692 1.4584 -2.4750 9 8 0.8657 1.5519 -2.3571 10 7 2.6251 1.4190 -3.7021 11 6 1.7752 1.4829 -4.8937 12 6 2.6495 1.4207 -6.1476 13 8 3.5314 0.2963 -6.1565 14 6 3.3385 2.7541 -6.4895 15 7 2.9892 2.4602 -7.8968 16 6 2.4984 3.6644 -8.5800 17 6 3.6415 4.6234 -8.7911 18 8 4.7554 4.3325 -8.4095 19 7 3.4258 5.8048 -9.4030 20 6 4.4657 6.6774 -9.5945 21 1 5.4578 6.4181 -9.2555 22 6 4.2435 7.8951 -10.2258 23 7 3.0365 8.2105 -10.6388 24 14 5.6605 9.0839 -10.4875 25 1 6.3049 8.8054 -11.7961 26 1 5.1466 10.4770 -10.4752 27 1 6.6565 8.9140 -9.3992 28 6 1.8651 1.6031 -7.4596 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 3.5837 0.5057 1.3002 33 1 3.5610 2.2828 1.2009 34 1 2.6779 1.5995 3.3764 35 1 1.3492 2.2685 2.3989 36 1 1.5098 0.5068 2.5957 37 1 3.5762 0.5009 -1.3060 38 1 3.5684 2.2774 -1.1960 39 1 3.5876 1.3445 -3.7963 40 1 1.0823 0.6415 -4.8913 41 1 1.2129 2.4167 -4.8892 42 1 4.0475 0.1949 -5.3450 43 1 2.8291 3.6283 -6.0839 44 1 4.4109 2.7570 -6.2945 45 1 2.0739 3.3872 -9.5450 46 1 1.7318 4.1415 -7.9694 47 1 2.5349 6.0375 -9.7078 48 1 2.8813 9.0607 -11.0793 49 1 1.7603 0.6863 -8.0398 50 1 0.9247 2.1406 -7.3378 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699920035.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:44 Heat of formation + Delta-G solvation = -101.718248 kcal Electronic energy + Delta-G solvation = -29254.374174 eV Core-core repulsion = 25088.886648 eV Total energy + Delta-G solvation = -4165.487525 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.81531 -40.71093 -39.73395 -37.73580 -36.87013 -35.90590 -35.25032 -33.31970 -32.62403 -31.95271 -31.05760 -28.63070 -27.27317 -26.81649 -25.41201 -23.70100 -22.50409 -21.58868 -21.04123 -20.98017 -20.43524 -19.90709 -18.62272 -17.89377 -17.50492 -17.08309 -16.71629 -16.65804 -16.56707 -16.26867 -15.83757 -15.60777 -15.55328 -15.28134 -14.98216 -14.74624 -14.48940 -14.39125 -14.13932 -13.90062 -13.68789 -13.47335 -13.37075 -13.00099 -12.99261 -12.94289 -12.78364 -12.47834 -12.43686 -12.19706 -12.13781 -12.02864 -11.79666 -11.67853 -11.51961 -11.34784 -10.96413 -10.87643 -10.36389 -10.20341 -10.03583 -10.00715 -9.69405 -8.48381 -5.97261 1.36574 1.40395 1.53100 1.53314 1.72349 2.02321 2.11269 2.27246 2.66982 2.92914 3.18122 3.25529 3.33103 3.57529 3.80129 3.85000 3.93323 4.02410 4.20116 4.27339 4.37183 4.40349 4.42131 4.44842 4.47232 4.55128 4.58214 4.62599 4.66963 4.70597 4.77419 4.86706 4.97130 5.02693 5.06875 5.08807 5.20578 5.32635 5.36683 5.39729 5.41091 5.47519 5.83622 5.83949 6.03355 6.06089 6.49474 6.57886 6.69634 7.10565 7.27963 7.53501 8.09016 8.68960 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014934 B = 0.001967 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.425238 B =14232.667780 C =15265.508027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.148 4.148 3 C -0.046 4.046 4 H 0.059 0.941 5 C -0.112 4.112 6 C -0.152 4.152 7 C -0.130 4.130 8 C 0.509 3.491 9 O -0.571 6.571 10 N -0.724 5.724 11 C 0.113 3.887 12 C 0.114 3.886 13 O -0.535 6.535 14 C -0.004 4.004 15 N -0.474 5.474 16 C 0.020 3.980 17 C 0.440 3.560 18 O -0.618 6.618 19 N -0.574 5.574 20 C -0.333 4.333 21 H 0.079 0.921 22 C -0.014 4.014 23 N -0.920 5.920 24 Si 0.993 3.007 25 H -0.272 1.272 26 H -0.270 1.270 27 H -0.272 1.272 28 C 0.019 3.981 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.117 0.883 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.044 0.956 36 H 0.051 0.949 37 H 0.121 0.879 38 H 0.116 0.884 39 H 0.411 0.589 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.389 0.611 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.109 0.891 46 H 0.080 0.920 47 H 0.396 0.604 48 H 0.278 0.722 49 H 0.106 0.894 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.026 -16.079 21.590 27.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.166 4.166 3 C -0.065 4.065 4 H 0.077 0.923 5 C -0.149 4.149 6 C -0.210 4.210 7 C -0.170 4.170 8 C 0.297 3.703 9 O -0.449 6.449 10 N -0.379 5.379 11 C -0.012 4.012 12 C 0.071 3.929 13 O -0.342 6.342 14 C -0.133 4.133 15 N -0.197 5.197 16 C -0.112 4.112 17 C 0.227 3.773 18 O -0.504 6.504 19 N -0.211 5.211 20 C -0.462 4.462 21 H 0.097 0.903 22 C -0.214 4.214 23 N -0.561 5.561 24 Si 0.817 3.183 25 H -0.197 1.197 26 H -0.195 1.195 27 H -0.197 1.197 28 C -0.109 4.109 29 H 0.098 0.902 30 H 0.114 0.886 31 H 0.135 0.865 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.139 0.861 38 H 0.134 0.866 39 H 0.248 0.752 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.239 0.761 43 H 0.090 0.910 44 H 0.094 0.906 45 H 0.127 0.873 46 H 0.098 0.902 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.124 0.876 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.979 -16.354 20.761 26.727 hybrid contribution -0.011 1.468 0.162 1.477 sum -3.990 -14.886 20.923 25.986 Atomic orbital electron populations 1.23745 0.96618 1.00980 1.00893 1.22896 0.95781 0.98077 0.99831 1.20167 0.96610 0.95857 0.93850 0.92297 1.21525 0.97577 1.03130 0.92684 1.21765 0.99860 1.01472 0.97874 1.21788 0.98274 1.06694 0.90234 1.21280 0.89040 0.74691 0.85279 1.90712 1.16927 1.50160 1.87116 1.45880 1.11228 1.75601 1.05159 1.21773 0.93366 1.02994 0.83055 1.22694 0.90341 0.85784 0.94033 1.86602 1.57515 1.45958 1.44128 1.24488 1.02154 0.97246 0.89461 1.68444 1.25728 1.12050 1.13497 1.22401 0.94628 0.91570 1.02595 1.20707 0.90699 0.83281 0.82564 1.90486 1.26687 1.77327 1.55882 1.41944 1.11402 1.15405 1.52348 1.19648 0.91144 0.97967 1.37480 0.90346 1.26059 1.00227 0.99073 0.96018 1.69674 1.21723 1.24803 1.39891 0.84921 0.77509 0.77145 0.78723 1.19705 1.19489 1.19695 1.24249 0.94157 0.99291 0.93209 0.90242 0.88559 0.86530 0.90398 0.90833 0.91929 0.93695 0.93005 0.86107 0.86618 0.75213 0.90360 0.90951 0.76105 0.91020 0.90592 0.87288 0.90232 0.77025 0.91288 0.87587 0.87491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.35 13.42 67.78 0.91 -2.44 16 2 C -0.15 -2.22 7.00 25.65 0.18 -2.04 16 3 C -0.05 -0.62 1.80 -11.54 -0.02 -0.64 16 4 H 0.06 1.09 7.47 -2.39 -0.02 1.07 16 5 C -0.11 -1.06 5.39 30.59 0.16 -0.90 16 6 C -0.15 -1.67 9.64 71.98 0.69 -0.97 16 7 C -0.13 -1.37 5.15 29.85 0.15 -1.22 16 8 C 0.51 9.01 7.52 87.66 0.66 9.67 16 9 O -0.57 -14.87 14.47 -3.04 -0.04 -14.91 16 10 N -0.72 -10.65 5.34 -463.06 -2.47 -13.13 16 11 C 0.11 2.06 5.28 86.38 0.46 2.51 16 12 C 0.11 2.41 1.52 -10.15 -0.02 2.40 16 13 O -0.54 -11.33 13.50 -148.98 -2.01 -13.35 16 14 C 0.00 -0.12 6.16 86.41 0.53 0.41 16 15 N -0.47 -15.41 5.95 -915.27 -5.44 -20.85 16 16 C 0.02 0.68 5.31 85.56 0.45 1.13 16 17 C 0.44 21.12 7.59 87.66 0.67 21.79 16 18 O -0.62 -34.36 15.12 -3.07 -0.05 -34.41 16 19 N -0.57 -29.61 5.29 -306.98 -1.62 -31.24 16 20 C -0.33 -18.98 9.68 84.04 0.81 -18.16 16 21 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 22 C -0.01 -0.75 5.50 84.93 0.47 -0.29 16 23 N -0.92 -49.75 13.05 21.66 0.28 -49.47 16 24 Si 0.99 42.98 29.55 68.60 2.03 45.00 16 25 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 26 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 27 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 28 C 0.02 0.45 7.38 86.41 0.64 1.08 16 29 H 0.08 1.68 7.83 -2.91 -0.02 1.66 16 30 H 0.10 1.54 8.06 -2.91 -0.02 1.51 16 31 H 0.12 1.39 8.06 -2.91 -0.02 1.37 16 32 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.05 0.61 7.58 -2.39 -0.02 0.59 16 37 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.41 3.88 7.30 -92.72 -0.68 3.20 16 40 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.07 1.47 8.04 -2.38 -0.02 1.45 16 42 H 0.39 4.88 7.60 -74.06 -0.56 4.32 16 43 H 0.07 2.07 7.67 -2.39 -0.02 2.05 16 44 H 0.08 2.52 8.09 -2.39 -0.02 2.50 16 45 H 0.11 3.41 8.14 -2.38 -0.02 3.39 16 46 H 0.08 2.35 7.69 -2.39 -0.02 2.33 16 47 H 0.40 19.40 7.90 -92.71 -0.73 18.67 16 48 H 0.28 14.05 8.31 -92.70 -0.77 13.28 16 49 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 50 H 0.11 1.93 7.75 -2.39 -0.02 1.91 16 Total: -1.00 -77.07 411.70 -3.60 -80.66 By element: Atomic # 1 Polarization: 40.35 SS G_CDS: -1.02 Total: 39.33 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: 6.75 Total: 12.35 kcal Atomic # 7 Polarization: -105.42 SS G_CDS: -9.26 Total: -114.68 kcal Atomic # 8 Polarization: -60.56 SS G_CDS: -2.10 Total: -62.67 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.00 kcal Total: -77.07 -3.60 -80.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699920035.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.055 kcal (2) G-P(sol) polarization free energy of solvation -77.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds