Wall clock time and date at job start Tue Mar 31 2020 22:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21275 * 120.00103 * 2 1 4 4 N 1.34774 * 119.99785 * 180.02562 * 2 1 3 5 5 C 1.46499 * 119.99824 * 179.97438 * 4 2 1 6 6 H 1.09004 * 109.47115 * 34.99855 * 5 4 2 7 7 C 1.50705 * 109.47337 * 154.99853 * 5 4 2 8 8 O 1.21282 * 119.99726 * 18.84122 * 7 5 4 9 9 N 1.34776 * 120.00200 * 198.84279 * 7 5 4 10 10 C 1.46498 * 120.00196 * 184.88670 * 9 7 5 11 11 H 1.09005 * 110.96961 * 322.30659 * 10 9 7 12 12 C 1.55014 * 111.10644 * 86.44890 * 10 9 7 13 13 O 1.43912 * 105.17966 * 81.91966 * 12 10 9 14 14 C 1.42386 * 109.55584 * 24.29517 * 13 12 10 15 15 C 1.52699 * 116.14181 * 129.84626 * 14 13 12 16 16 N 1.47210 * 87.79953 * 90.70215 * 15 14 13 17 17 C 1.36931 * 135.97717 * 206.45951 * 16 15 14 18 18 H 1.07998 * 119.99726 * 354.68483 * 17 16 15 19 19 C 1.38811 * 120.00200 * 174.67948 * 17 16 15 20 20 N 1.31616 * 120.00084 * 173.35086 * 19 17 16 21 21 Si 1.86800 * 120.00122 * 353.08065 * 19 17 16 22 22 H 1.48493 * 109.47531 * 176.28962 * 21 19 17 23 23 H 1.48497 * 109.47188 * 296.29104 * 21 19 17 24 24 H 1.48503 * 109.46780 * 56.28670 * 21 19 17 25 25 C 1.47216 * 88.05244 * 26.71254 * 16 15 14 26 26 C 1.53665 * 108.53641 * 358.08450 * 14 13 12 27 27 C 1.52999 * 109.47089 * 274.99499 * 5 4 2 28 28 C 1.52996 * 109.47220 * 305.16702 * 27 5 4 29 29 C 1.53004 * 109.46633 * 65.16554 * 27 5 4 30 30 H 1.09005 * 109.46790 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46711 * 299.99779 * 1 2 3 32 32 H 1.09001 * 109.46971 * 60.00118 * 1 2 3 33 33 H 0.96999 * 120.00265 * 359.97438 * 4 2 1 34 34 H 0.96997 * 119.99747 * 4.88319 * 9 7 5 35 35 H 1.09001 * 110.30545 * 322.99312 * 12 10 9 36 36 H 1.09003 * 110.30407 * 200.84775 * 12 10 9 37 37 H 1.08996 * 113.49889 * 335.96546 * 15 14 13 38 38 H 1.09007 * 113.55798 * 205.44127 * 15 14 13 39 39 H 0.97002 * 119.99697 * 354.64475 * 20 19 17 40 40 H 1.08995 * 113.50185 * 88.01858 * 25 16 15 41 41 H 1.09002 * 113.49685 * 218.56370 * 25 16 15 42 42 H 1.09001 * 110.92738 * 97.30207 * 26 14 13 43 43 H 1.08999 * 110.92942 * 220.96118 * 26 14 13 44 44 H 1.09004 * 109.47138 * 185.15961 * 27 5 4 45 45 H 1.08999 * 109.47548 * 60.00051 * 28 27 5 46 46 H 1.09008 * 109.46827 * 180.02562 * 28 27 5 47 47 H 1.09000 * 109.47312 * 299.99467 * 28 27 5 48 48 H 1.09005 * 109.47378 * 53.30001 * 29 27 5 49 49 H 1.09007 * 109.46962 * 173.29311 * 29 27 5 50 50 H 1.08995 * 109.47151 * 293.29562 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 1 4.0095 -0.3255 0.5884 7 6 4.1485 -2.4551 0.5989 8 8 3.4135 -3.4169 0.6733 9 7 5.4148 -2.5379 1.0530 10 6 5.9370 -3.8181 1.5374 11 1 5.1710 -4.3712 2.0811 12 6 6.5139 -4.6624 0.3724 13 8 7.8412 -4.1495 0.1566 14 6 8.3150 -3.5358 1.3509 15 6 9.7006 -3.9678 1.8252 16 7 10.2562 -2.8629 1.0267 17 6 11.4475 -2.5991 0.4054 18 1 12.2794 -3.2778 0.5224 19 6 11.5860 -1.4595 -0.3750 20 7 12.7642 -1.1364 -0.8647 21 14 10.0988 -0.3886 -0.7364 22 1 10.5248 0.8060 -1.5087 23 1 9.1112 -1.1641 -1.5291 24 1 9.4778 0.0436 0.5415 25 6 8.9719 -2.1629 1.1941 26 6 7.2058 -3.6105 2.4117 27 6 4.1553 -1.0413 -1.4383 28 6 3.5417 -2.1498 -2.2958 29 6 3.7538 0.3225 -2.0039 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6959 -2.0072 -0.0005 34 1 5.9804 -1.7500 1.0589 35 1 5.9082 -4.5332 -0.5245 36 1 6.5562 -5.7149 0.6528 37 1 9.9949 -4.9541 1.4666 38 1 9.8511 -3.8471 2.8981 39 1 13.5494 -1.6495 -0.6176 40 1 8.9239 -1.5526 2.0959 41 1 8.6508 -1.6249 0.3022 42 1 7.3618 -4.4580 3.0792 43 1 7.1425 -2.6795 2.9751 44 1 5.2414 -1.1333 -1.4482 45 1 2.4556 -2.0578 -2.2860 46 1 3.9050 -2.0603 -3.3197 47 1 3.8277 -3.1214 -1.8929 48 1 4.0897 1.1092 -1.3284 49 1 4.2163 0.4609 -2.9813 50 1 2.6696 0.3689 -2.1052 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700213835.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:45 Heat of formation + Delta-G solvation = -79.004446 kcal Electronic energy + Delta-G solvation = -31621.114725 eV Core-core repulsion = 27456.612144 eV Total energy + Delta-G solvation = -4164.502581 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.05955 -41.36788 -40.04325 -38.17621 -37.05460 -35.59891 -34.53575 -34.20544 -32.08671 -30.84999 -30.18152 -28.16793 -27.79615 -27.31216 -27.04408 -23.61415 -22.79298 -22.24902 -21.68661 -20.83204 -20.67218 -19.59756 -18.87415 -18.22650 -17.54314 -17.44223 -17.03393 -16.79357 -16.49808 -16.16985 -15.95606 -15.50763 -15.37943 -15.28197 -15.13286 -14.86116 -14.64044 -14.41367 -14.21183 -14.01972 -13.44270 -13.33466 -13.29889 -13.15606 -12.88138 -12.82904 -12.80727 -12.63093 -12.50123 -12.39686 -12.38796 -12.08321 -11.88238 -11.85142 -11.32396 -11.21760 -11.08301 -10.97836 -10.90287 -10.42188 -10.11162 -10.02240 -9.21938 -8.65620 -5.46887 1.32968 1.36443 1.47519 1.64539 1.67578 1.78881 2.45338 2.53700 2.66823 2.99768 3.20233 3.33671 3.47871 3.53550 3.65593 3.72003 3.86568 3.96486 3.97320 4.12251 4.34009 4.39570 4.47729 4.55044 4.55701 4.59654 4.63265 4.66548 4.69695 4.69825 4.75025 4.78123 4.88726 4.90102 4.92537 4.94102 4.94355 5.06067 5.11565 5.21246 5.25918 5.35784 5.36990 5.39029 5.94303 6.20353 6.33799 6.55354 6.68967 6.98644 7.26072 7.31697 8.25833 8.89515 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013818 B = 0.003580 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.856384 B = 7819.151850 C = 9033.383859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.508 3.492 3 O -0.581 6.581 4 N -0.703 5.703 5 C 0.133 3.867 6 H 0.107 0.893 7 C 0.524 3.476 8 O -0.553 6.553 9 N -0.710 5.710 10 C 0.120 3.880 11 H 0.128 0.872 12 C 0.033 3.967 13 O -0.371 6.371 14 C 0.084 3.916 15 C 0.110 3.890 16 N -0.659 5.659 17 C -0.285 4.285 18 H 0.046 0.954 19 C -0.087 4.087 20 N -0.974 5.974 21 Si 1.108 2.892 22 H -0.309 1.309 23 H -0.283 1.283 24 H -0.247 1.247 25 C 0.087 3.913 26 C -0.129 4.129 27 C -0.103 4.103 28 C -0.141 4.141 29 C -0.129 4.129 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.416 0.584 34 H 0.410 0.590 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.040 0.960 38 H 0.081 0.919 39 H 0.245 0.755 40 H 0.082 0.918 41 H 0.040 0.960 42 H 0.127 0.873 43 H 0.113 0.887 44 H 0.078 0.922 45 H 0.067 0.933 46 H 0.060 0.940 47 H 0.047 0.953 48 H 0.053 0.947 49 H 0.055 0.945 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.813 -3.267 6.310 30.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.297 3.703 3 O -0.461 6.461 4 N -0.358 5.358 5 C 0.023 3.977 6 H 0.125 0.875 7 C 0.310 3.690 8 O -0.431 6.431 9 N -0.361 5.361 10 C 0.015 3.985 11 H 0.146 0.854 12 C -0.044 4.044 13 O -0.290 6.290 14 C 0.043 3.957 15 C -0.015 4.015 16 N -0.388 5.388 17 C -0.413 4.413 18 H 0.064 0.936 19 C -0.278 4.278 20 N -0.620 5.620 21 Si 0.935 3.065 22 H -0.237 1.237 23 H -0.210 1.210 24 H -0.171 1.171 25 C -0.038 4.038 26 C -0.168 4.168 27 C -0.123 4.123 28 C -0.198 4.198 29 C -0.186 4.186 30 H 0.118 0.882 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.255 0.745 34 H 0.245 0.755 35 H 0.097 0.903 36 H 0.108 0.892 37 H 0.059 0.941 38 H 0.099 0.901 39 H 0.054 0.946 40 H 0.099 0.901 41 H 0.057 0.943 42 H 0.146 0.854 43 H 0.132 0.868 44 H 0.096 0.904 45 H 0.086 0.914 46 H 0.079 0.921 47 H 0.066 0.934 48 H 0.072 0.928 49 H 0.074 0.926 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -30.073 -1.916 5.240 30.587 hybrid contribution 1.844 -1.500 0.548 2.440 sum -28.229 -3.416 5.787 29.018 Atomic orbital electron populations 1.21875 0.88247 1.06126 1.06081 1.21491 0.92089 0.82561 0.74170 1.90737 1.71538 1.32634 1.51159 1.45868 1.04973 1.10073 1.74900 1.20806 0.83330 0.95965 0.97576 0.87493 1.20566 0.81802 0.89746 0.76853 1.90670 1.56271 1.39258 1.56905 1.45918 1.13293 1.12874 1.64034 1.22616 0.96767 0.84818 0.94320 0.85423 1.24111 0.82383 0.98568 0.99314 1.88446 1.31636 1.75297 1.33656 1.22944 0.93773 0.93278 0.85681 1.22965 0.90400 0.92133 0.96002 1.45955 1.11904 1.20235 1.60670 1.19994 0.88270 1.07496 1.25545 0.93613 1.27049 1.04787 0.98991 0.97006 1.71013 0.98796 1.43515 1.48688 0.83315 0.71796 0.73888 0.77514 1.23724 1.21002 1.17137 1.23468 0.85014 0.95602 0.99689 1.23253 0.89722 1.07020 0.96770 1.21486 1.00677 0.97333 0.92814 1.21764 1.01489 0.96948 0.99590 1.21756 1.01306 0.95093 1.00479 0.88221 0.87867 0.87856 0.74501 0.75457 0.90311 0.89246 0.94122 0.90103 0.94572 0.90095 0.94253 0.85447 0.86827 0.90397 0.91410 0.92120 0.93406 0.92831 0.92559 0.92809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 10.39 71.24 0.74 -0.55 16 2 C 0.51 8.38 6.57 87.66 0.58 8.95 16 3 O -0.58 -14.35 14.12 -3.02 -0.04 -14.39 16 4 N -0.70 -10.79 4.01 -446.09 -1.79 -12.58 16 5 C 0.13 2.43 2.35 44.25 0.10 2.54 16 6 H 0.11 2.08 7.58 -2.39 -0.02 2.06 16 7 C 0.52 10.17 6.14 87.66 0.54 10.71 16 8 O -0.55 -12.39 15.42 -3.03 -0.05 -12.44 16 9 N -0.71 -13.16 5.24 -435.25 -2.28 -15.44 16 10 C 0.12 2.15 3.41 46.53 0.16 2.30 16 11 H 0.13 1.94 7.68 -2.38 -0.02 1.92 16 12 C 0.03 0.78 7.49 72.67 0.54 1.32 16 13 O -0.37 -12.61 11.18 -148.98 -1.67 -14.27 16 14 C 0.08 2.56 1.75 -10.67 -0.02 2.54 16 15 C 0.11 4.03 8.20 83.38 0.68 4.71 16 16 N -0.66 -32.17 3.67 -738.95 -2.71 -34.88 16 17 C -0.29 -17.22 11.08 84.03 0.93 -16.29 16 18 H 0.05 2.99 8.06 -2.91 -0.02 2.97 16 19 C -0.09 -5.41 5.50 84.86 0.47 -4.94 16 20 N -0.97 -65.13 13.70 21.65 0.30 -64.83 16 21 Si 1.11 55.11 25.02 68.60 1.72 56.82 16 22 H -0.31 -15.81 7.11 99.48 0.71 -15.11 16 23 H -0.28 -13.57 6.95 99.48 0.69 -12.87 16 24 H -0.25 -10.36 6.19 99.48 0.62 -9.74 16 25 C 0.09 3.29 5.46 83.48 0.46 3.75 16 26 C -0.13 -2.28 5.97 31.67 0.19 -2.09 16 27 C -0.10 -2.03 2.73 -10.79 -0.03 -2.06 16 28 C -0.14 -2.57 8.79 71.98 0.63 -1.94 16 29 C -0.13 -2.69 7.67 71.98 0.55 -2.13 16 30 H 0.10 0.32 7.91 -2.38 -0.02 0.30 16 31 H 0.10 0.69 8.14 -2.39 -0.02 0.68 16 32 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.42 5.36 7.57 -92.71 -0.70 4.66 16 34 H 0.41 7.31 8.63 -92.71 -0.80 6.51 16 35 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.08 2.48 8.13 -2.38 -0.02 2.46 16 39 H 0.25 16.44 8.73 -92.71 -0.81 15.63 16 40 H 0.08 2.65 7.94 -2.39 -0.02 2.63 16 41 H 0.04 1.61 3.98 -2.39 -0.01 1.60 16 42 H 0.13 1.61 8.13 -2.39 -0.02 1.59 16 43 H 0.11 1.61 7.81 -2.39 -0.02 1.59 16 44 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 45 H 0.07 1.07 7.47 -2.39 -0.02 1.05 16 46 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 47 H 0.05 0.97 7.22 -2.39 -0.02 0.95 16 48 H 0.05 1.26 7.47 -2.38 -0.02 1.24 16 49 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 50 H 0.05 1.11 6.25 -2.39 -0.01 1.09 16 Total: -1.00 -83.60 391.78 -0.69 -84.29 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: -0.69 Total: 20.88 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: 6.52 Total: 6.84 kcal Atomic # 7 Polarization: -121.25 SS G_CDS: -6.49 Total: -127.74 kcal Atomic # 8 Polarization: -39.34 SS G_CDS: -1.75 Total: -41.10 kcal Atomic # 14 Polarization: 55.11 SS G_CDS: 1.72 Total: 56.82 kcal Total: -83.60 -0.69 -84.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700213835.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.285 kcal (2) G-P(sol) polarization free energy of solvation -83.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds