Wall clock time and date at job start Tue Mar 31 2020 22:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35710 * 117.00105 * 2 1 4 4 C 1.41935 * 126.87620 * 180.30050 * 3 2 1 5 5 C 1.35271 * 103.95507 * 180.11461 * 4 3 2 6 6 C 1.50706 * 126.70607 * 179.87965 * 5 4 3 7 7 C 1.52999 * 109.46953 * 89.71100 * 6 5 4 8 8 C 1.50706 * 109.46573 * 179.97438 * 7 6 5 9 9 O 1.21274 * 120.00042 * 359.72068 * 8 7 6 10 10 N 1.34777 * 119.99766 * 179.97438 * 8 7 6 11 11 C 1.46504 * 119.99854 * 0.02562 * 10 8 7 12 12 C 1.46496 * 120.00266 * 179.97438 * 10 8 7 13 13 C 1.52998 * 109.46931 * 90.00065 * 12 10 8 14 14 C 1.52997 * 109.47604 * 300.00524 * 13 12 10 15 15 C 1.53004 * 109.47024 * 60.00442 * 13 12 10 16 16 C 1.52996 * 109.47099 * 180.02562 * 13 12 10 17 17 N 1.46509 * 109.47105 * 179.97438 * 16 13 12 18 18 C 1.36934 * 120.00003 * 179.97438 * 17 16 13 19 19 H 1.08005 * 120.00154 * 0.02562 * 18 17 16 20 20 C 1.38814 * 120.00246 * 180.02562 * 18 17 16 21 21 N 1.31617 * 119.99531 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00234 * 180.02562 * 20 18 17 23 23 H 1.48509 * 109.46994 * 90.00219 * 22 20 18 24 24 H 1.48497 * 109.47136 * 209.99766 * 22 20 18 25 25 H 1.48499 * 109.47265 * 330.00269 * 22 20 18 26 26 O 1.34085 * 106.58531 * 359.61356 * 5 4 3 27 27 N 1.20921 * 111.71374 * 0.26346 * 26 5 4 28 28 H 1.09004 * 109.47647 * 300.00494 * 1 2 3 29 29 H 1.08998 * 109.46871 * 60.00253 * 1 2 3 30 30 H 1.09000 * 109.47369 * 180.02562 * 1 2 3 31 31 H 1.08000 * 128.02199 * 0.02562 * 4 3 2 32 32 H 1.09000 * 109.46974 * 329.70848 * 6 5 4 33 33 H 1.09001 * 109.46547 * 209.70938 * 6 5 4 34 34 H 1.09000 * 109.47486 * 60.00062 * 7 6 5 35 35 H 1.09001 * 109.47362 * 299.99339 * 7 6 5 36 36 H 1.09002 * 109.47335 * 89.99996 * 11 10 8 37 37 H 1.09001 * 109.47076 * 209.99400 * 11 10 8 38 38 H 1.08996 * 109.47068 * 329.99428 * 11 10 8 39 39 H 1.08997 * 109.47682 * 210.00272 * 12 10 8 40 40 H 1.09004 * 109.47271 * 330.00368 * 12 10 8 41 41 H 1.09002 * 109.47424 * 59.99446 * 14 13 12 42 42 H 1.09001 * 109.47757 * 180.02562 * 14 13 12 43 43 H 1.09001 * 109.46880 * 300.00167 * 14 13 12 44 44 H 1.08997 * 109.47082 * 60.00103 * 15 13 12 45 45 H 1.09001 * 109.47233 * 179.97438 * 15 13 12 46 46 H 1.09002 * 109.47092 * 299.99989 * 15 13 12 47 47 H 1.08997 * 109.47528 * 300.00215 * 16 13 12 48 48 H 1.08999 * 109.47347 * 60.00694 * 16 13 12 49 49 H 0.96993 * 119.99829 * 0.02562 * 17 16 13 50 50 H 0.97005 * 119.99843 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 3.4434 1.4526 -0.0060 5 6 3.5397 2.8019 -0.0006 6 6 4.8089 3.6144 -0.0009 7 6 5.2381 3.8893 -1.4435 8 6 6.5070 4.7023 -1.4437 9 8 7.0149 5.0339 -0.3935 10 7 7.0746 5.0653 -2.6110 11 6 6.4577 4.6699 -3.8796 12 6 8.3078 5.8561 -2.6113 13 6 9.5157 4.9171 -2.6103 14 6 9.4755 4.0355 -1.3606 15 6 9.4760 4.0338 -3.8590 16 6 10.8036 5.7430 -2.6100 17 7 11.9604 4.8439 -2.6085 18 6 13.2287 5.3600 -2.6085 19 1 13.3764 6.4299 -2.6092 20 6 14.3247 4.5081 -2.6076 21 7 14.1447 3.2043 -2.6072 22 14 16.0550 5.2121 -2.6068 23 1 16.5127 5.3991 -1.2065 24 1 16.9708 4.2753 -3.3060 25 1 16.0569 6.5215 -3.3072 26 8 2.2851 3.2751 -0.0009 27 7 1.4700 2.3819 -0.0006 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 4.2447 0.7285 -0.0118 32 1 5.5948 3.0608 0.5129 33 1 4.6351 4.5599 0.5130 34 1 4.4522 4.4429 -1.9572 35 1 5.4120 2.9438 -1.9573 36 1 5.7506 5.4373 -4.1946 37 1 7.2308 4.5546 -4.6392 38 1 5.9327 3.7236 -3.7489 39 1 8.3365 6.4842 -3.5016 40 1 8.3361 6.4854 -1.7217 41 1 8.5579 3.4471 -1.3603 42 1 10.3363 3.3668 -1.3596 43 1 9.5037 4.6647 -0.4710 44 1 9.5048 4.6619 -4.7494 45 1 10.3369 3.3652 -3.8586 46 1 8.5585 3.4455 -3.8588 47 1 10.8326 6.3714 -3.5002 48 1 10.8318 6.3719 -1.7202 49 1 11.8277 3.8830 -2.6082 50 1 14.9106 2.6089 -2.6069 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700440469.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:27 Heat of formation + Delta-G solvation = 2.505694 kcal Electronic energy + Delta-G solvation = -29657.222318 eV Core-core repulsion = 25496.254282 eV Total energy + Delta-G solvation = -4160.968036 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -45.22783 -40.32387 -39.19966 -37.48967 -35.13988 -35.00006 -33.24031 -33.00469 -30.85657 -30.09727 -28.08113 -27.89519 -26.92873 -26.07418 -25.57884 -24.29484 -23.71101 -22.38404 -21.41034 -19.35444 -18.43488 -18.25487 -18.01396 -17.22771 -17.11425 -16.90172 -16.26652 -15.98297 -15.80071 -15.41298 -14.72750 -14.57484 -14.28874 -14.06254 -13.79231 -13.50170 -13.33455 -13.08664 -12.92190 -12.82241 -12.62862 -12.61387 -12.41597 -12.27143 -12.26159 -12.02356 -11.76918 -11.27251 -11.23466 -11.10242 -10.95674 -10.79357 -10.69606 -10.28460 -10.21677 -10.02939 -9.90168 -9.69342 -9.63730 -9.53961 -8.82687 -8.56824 -6.85427 -5.72504 -2.99759 1.04642 1.91860 2.38202 2.57925 2.69553 3.03682 3.46304 3.51396 3.52833 3.84768 4.26170 4.48270 4.57014 4.61336 4.63595 4.69019 4.70986 4.77832 4.95761 5.02417 5.04862 5.12924 5.16448 5.22100 5.34397 5.41665 5.43093 5.53026 5.56723 5.60248 5.68693 5.74307 5.93736 5.98155 6.13021 6.16340 6.31460 6.43535 6.54392 6.59152 6.62794 6.76175 6.80312 6.96831 7.00646 7.33304 7.74212 7.88774 8.13687 8.47175 9.58286 10.17677 10.52416 11.50657 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022964 B = 0.001863 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.996103 B =15025.833924 C =15478.387126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.284 6.284 3 C 0.208 3.792 4 C -0.232 4.232 5 C 0.003 3.997 6 C -0.027 4.027 7 C -0.138 4.138 8 C 0.514 3.486 9 O -0.530 6.530 10 N -0.608 5.608 11 C 0.070 3.930 12 C 0.127 3.873 13 C -0.086 4.086 14 C -0.122 4.122 15 C -0.136 4.136 16 C 0.165 3.835 17 N -0.727 5.727 18 C -0.236 4.236 19 H 0.069 0.931 20 C -0.015 4.015 21 N -0.935 5.935 22 Si 0.906 3.094 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.283 1.283 26 O 0.099 5.901 27 N -0.412 5.412 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.105 0.895 31 H 0.180 0.820 32 H 0.111 0.889 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.055 0.945 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.037 0.963 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.048 0.952 45 H 0.066 0.934 46 H 0.045 0.955 47 H 0.017 0.983 48 H 0.019 0.981 49 H 0.385 0.615 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.393 -2.680 0.472 28.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.191 6.191 3 C 0.011 3.989 4 C -0.254 4.254 5 C -0.061 4.061 6 C -0.065 4.065 7 C -0.178 4.178 8 C 0.301 3.699 9 O -0.406 6.406 10 N -0.341 5.341 11 C -0.073 4.073 12 C 0.004 3.996 13 C -0.087 4.087 14 C -0.180 4.180 15 C -0.194 4.194 16 C 0.037 3.963 17 N -0.373 5.373 18 C -0.367 4.367 19 H 0.087 0.913 20 C -0.211 4.211 21 N -0.584 5.584 22 Si 0.738 3.262 23 H -0.218 1.218 24 H -0.219 1.219 25 H -0.208 1.208 26 O 0.039 5.961 27 N -0.139 5.139 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.124 0.876 31 H 0.197 0.803 32 H 0.129 0.871 33 H 0.119 0.881 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.073 0.927 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.056 0.944 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.067 0.933 45 H 0.085 0.915 46 H 0.064 0.936 47 H 0.035 0.965 48 H 0.037 0.963 49 H 0.220 0.780 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -29.153 -2.270 1.013 29.259 hybrid contribution 1.340 -0.557 -0.195 1.464 sum -27.813 -2.827 0.818 27.968 Atomic orbital electron populations 1.23065 0.76846 1.04110 1.02322 1.86201 1.22575 1.20951 1.89342 1.22041 0.90992 0.85694 1.00220 1.21857 0.94315 0.95800 1.13413 1.24377 0.88245 0.93258 1.00210 1.19972 0.88605 1.00641 0.97299 1.21696 0.96683 1.01757 0.97695 1.20320 0.85474 0.80367 0.83722 1.90749 1.64149 1.54990 1.30728 1.47760 1.26045 1.54407 1.05854 1.21980 0.98920 1.00092 0.86304 1.21571 0.82106 0.92927 1.02992 1.21105 0.94779 0.96391 0.96439 1.21712 1.00353 0.99296 0.96630 1.21891 1.01442 0.99594 0.96430 1.20585 0.85767 0.92362 0.97615 1.42383 1.00466 1.05135 1.89282 1.19246 0.83411 0.91885 1.42188 0.91274 1.24715 0.97785 0.95328 1.03286 1.69658 1.29420 1.01179 1.58120 0.86195 0.84839 0.77710 0.77488 1.21797 1.21866 1.20838 1.84808 1.12306 1.30001 1.68987 1.74137 1.15695 0.96724 1.27355 0.92277 0.92259 0.87636 0.80289 0.87100 0.88050 0.88389 0.88286 0.92678 0.90027 0.91212 0.90650 0.89708 0.94398 0.92208 0.92484 0.93273 0.91484 0.93594 0.96536 0.96285 0.78021 0.93613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.73 101.05 1.08 1.28 16 2 O -0.28 -2.74 10.57 -18.83 -0.20 -2.94 16 3 C 0.21 2.15 8.01 -16.66 -0.13 2.02 16 4 C -0.23 -2.01 11.11 -39.22 -0.44 -2.45 16 5 C 0.00 0.02 6.73 -35.36 -0.24 -0.22 16 6 C -0.03 -0.20 5.07 -27.88 -0.14 -0.34 16 7 C -0.14 -0.99 4.23 -27.88 -0.12 -1.11 16 8 C 0.51 5.65 6.07 -10.98 -0.07 5.58 16 9 O -0.53 -7.76 13.77 5.56 0.08 -7.68 16 10 N -0.61 -6.37 2.40 -181.57 -0.44 -6.81 16 11 C 0.07 0.50 9.15 59.85 0.55 1.05 16 12 C 0.13 1.63 4.60 -4.04 -0.02 1.61 16 13 C -0.09 -1.37 0.60 -154.51 -0.09 -1.46 16 14 C -0.12 -2.13 6.97 37.16 0.26 -1.87 16 15 C -0.14 -2.05 7.05 37.16 0.26 -1.79 16 16 C 0.16 3.32 5.15 -4.04 -0.02 3.30 16 17 N -0.73 -18.35 5.00 -59.90 -0.30 -18.64 16 18 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 19 H 0.07 1.90 7.83 -52.48 -0.41 1.48 16 20 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 21 N -0.93 -28.37 13.06 55.49 0.72 -27.65 16 22 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 26 O 0.10 0.99 11.19 17.06 0.19 1.18 16 27 N -0.41 -4.51 11.54 30.38 0.35 -4.16 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.18 1.21 8.06 -52.49 -0.42 0.78 16 32 H 0.11 0.85 8.10 -51.93 -0.42 0.43 16 33 H 0.10 0.77 8.10 -51.93 -0.42 0.35 16 34 H 0.10 0.56 8.11 -51.93 -0.42 0.14 16 35 H 0.10 0.59 7.40 -51.93 -0.38 0.21 16 36 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.08 0.61 6.05 -51.93 -0.31 0.30 16 38 H 0.07 0.38 6.44 -51.93 -0.33 0.05 16 39 H 0.08 0.85 8.07 -51.93 -0.42 0.43 16 40 H 0.08 1.21 7.42 -51.93 -0.39 0.83 16 41 H 0.04 0.59 6.15 -51.93 -0.32 0.27 16 42 H 0.06 1.19 6.86 -51.93 -0.36 0.84 16 43 H 0.06 1.07 7.73 -51.93 -0.40 0.66 16 44 H 0.05 0.69 8.08 -51.93 -0.42 0.27 16 45 H 0.07 1.22 6.86 -51.93 -0.36 0.87 16 46 H 0.05 0.57 5.99 -51.93 -0.31 0.26 16 47 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.38 10.16 5.36 -40.82 -0.22 9.94 16 50 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 399.14 15.07 6.01 6.01 Total: -1.00 -34.23 399.14 -5.95 -40.18 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -7.99 Total: 4.64 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: 0.64 Total: -1.72 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: 0.34 Total: -57.26 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.07 Total: -9.44 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.23 -5.95 -40.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700440469.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.684 kcal (2) G-P(sol) polarization free energy of solvation -34.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds