Wall clock time and date at job start Tue Mar 31 2020 22:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35710 * 117.00105 * 2 1 4 4 C 1.41935 * 126.87620 * 180.30050 * 3 2 1 5 5 C 1.35271 * 103.95507 * 180.11461 * 4 3 2 6 6 C 1.50706 * 126.70607 * 179.87965 * 5 4 3 7 7 C 1.52999 * 109.46953 * 89.71100 * 6 5 4 8 8 C 1.50706 * 109.46573 * 179.97438 * 7 6 5 9 9 O 1.21274 * 120.00042 * 359.72068 * 8 7 6 10 10 N 1.34777 * 119.99766 * 179.97438 * 8 7 6 11 11 C 1.46504 * 119.99854 * 0.02562 * 10 8 7 12 12 C 1.46496 * 120.00266 * 179.97438 * 10 8 7 13 13 C 1.52998 * 109.46931 * 90.00065 * 12 10 8 14 14 C 1.52997 * 109.47604 * 300.00524 * 13 12 10 15 15 C 1.53004 * 109.47024 * 60.00442 * 13 12 10 16 16 C 1.52996 * 109.47099 * 180.02562 * 13 12 10 17 17 N 1.46509 * 109.47105 * 179.97438 * 16 13 12 18 18 C 1.36934 * 120.00003 * 179.97438 * 17 16 13 19 19 H 1.08005 * 120.00154 * 0.02562 * 18 17 16 20 20 C 1.38814 * 120.00246 * 180.02562 * 18 17 16 21 21 N 1.31617 * 119.99531 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00234 * 180.02562 * 20 18 17 23 23 H 1.48509 * 109.46994 * 90.00219 * 22 20 18 24 24 H 1.48497 * 109.47136 * 209.99766 * 22 20 18 25 25 H 1.48499 * 109.47265 * 330.00269 * 22 20 18 26 26 O 1.34085 * 106.58531 * 359.61356 * 5 4 3 27 27 N 1.20921 * 111.71374 * 0.26346 * 26 5 4 28 28 H 1.09004 * 109.47647 * 300.00494 * 1 2 3 29 29 H 1.08998 * 109.46871 * 60.00253 * 1 2 3 30 30 H 1.09000 * 109.47369 * 180.02562 * 1 2 3 31 31 H 1.08000 * 128.02199 * 0.02562 * 4 3 2 32 32 H 1.09000 * 109.46974 * 329.70848 * 6 5 4 33 33 H 1.09001 * 109.46547 * 209.70938 * 6 5 4 34 34 H 1.09000 * 109.47486 * 60.00062 * 7 6 5 35 35 H 1.09001 * 109.47362 * 299.99339 * 7 6 5 36 36 H 1.09002 * 109.47335 * 89.99996 * 11 10 8 37 37 H 1.09001 * 109.47076 * 209.99400 * 11 10 8 38 38 H 1.08996 * 109.47068 * 329.99428 * 11 10 8 39 39 H 1.08997 * 109.47682 * 210.00272 * 12 10 8 40 40 H 1.09004 * 109.47271 * 330.00368 * 12 10 8 41 41 H 1.09002 * 109.47424 * 59.99446 * 14 13 12 42 42 H 1.09001 * 109.47757 * 180.02562 * 14 13 12 43 43 H 1.09001 * 109.46880 * 300.00167 * 14 13 12 44 44 H 1.08997 * 109.47082 * 60.00103 * 15 13 12 45 45 H 1.09001 * 109.47233 * 179.97438 * 15 13 12 46 46 H 1.09002 * 109.47092 * 299.99989 * 15 13 12 47 47 H 1.08997 * 109.47528 * 300.00215 * 16 13 12 48 48 H 1.08999 * 109.47347 * 60.00694 * 16 13 12 49 49 H 0.96993 * 119.99829 * 0.02562 * 17 16 13 50 50 H 0.97005 * 119.99843 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 3.4434 1.4526 -0.0060 5 6 3.5397 2.8019 -0.0006 6 6 4.8089 3.6144 -0.0009 7 6 5.2381 3.8893 -1.4435 8 6 6.5070 4.7023 -1.4437 9 8 7.0149 5.0339 -0.3935 10 7 7.0746 5.0653 -2.6110 11 6 6.4577 4.6699 -3.8796 12 6 8.3078 5.8561 -2.6113 13 6 9.5157 4.9171 -2.6103 14 6 9.4755 4.0355 -1.3606 15 6 9.4760 4.0338 -3.8590 16 6 10.8036 5.7430 -2.6100 17 7 11.9604 4.8439 -2.6085 18 6 13.2287 5.3600 -2.6085 19 1 13.3764 6.4299 -2.6092 20 6 14.3247 4.5081 -2.6076 21 7 14.1447 3.2043 -2.6072 22 14 16.0550 5.2121 -2.6068 23 1 16.5127 5.3991 -1.2065 24 1 16.9708 4.2753 -3.3060 25 1 16.0569 6.5215 -3.3072 26 8 2.2851 3.2751 -0.0009 27 7 1.4700 2.3819 -0.0006 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 4.2447 0.7285 -0.0118 32 1 5.5948 3.0608 0.5129 33 1 4.6351 4.5599 0.5130 34 1 4.4522 4.4429 -1.9572 35 1 5.4120 2.9438 -1.9573 36 1 5.7506 5.4373 -4.1946 37 1 7.2308 4.5546 -4.6392 38 1 5.9327 3.7236 -3.7489 39 1 8.3365 6.4842 -3.5016 40 1 8.3361 6.4854 -1.7217 41 1 8.5579 3.4471 -1.3603 42 1 10.3363 3.3668 -1.3596 43 1 9.5037 4.6647 -0.4710 44 1 9.5048 4.6619 -4.7494 45 1 10.3369 3.3652 -3.8586 46 1 8.5585 3.4455 -3.8588 47 1 10.8326 6.3714 -3.5002 48 1 10.8318 6.3719 -1.7202 49 1 11.8277 3.8830 -2.6082 50 1 14.9106 2.6089 -2.6069 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700440469.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:26 Heat of formation + Delta-G solvation = -20.985691 kcal Electronic energy + Delta-G solvation = -29658.240981 eV Core-core repulsion = 25496.254282 eV Total energy + Delta-G solvation = -4161.986699 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -45.94494 -41.24689 -39.84812 -38.75913 -36.38179 -35.70532 -34.80635 -33.84950 -32.26028 -31.37374 -28.87370 -28.57124 -28.13858 -27.30961 -26.93403 -25.40295 -24.45299 -24.00891 -22.08624 -20.31211 -19.74077 -19.13150 -18.96348 -18.72170 -17.80677 -17.66313 -17.21787 -16.92601 -16.51426 -16.39792 -16.06726 -15.79825 -15.47042 -15.19901 -14.97551 -14.80305 -14.36972 -14.22121 -13.95090 -13.81241 -13.67833 -13.52104 -13.34529 -13.10195 -13.00000 -12.91469 -12.84398 -12.75262 -12.48448 -12.44565 -12.34719 -12.19659 -12.07722 -11.88547 -11.61409 -11.58461 -11.44058 -10.91862 -10.75899 -10.48856 -10.28107 -9.48050 -8.94762 -7.92890 -5.20161 0.37329 1.21510 1.47374 1.49424 1.57625 1.75114 1.77258 2.00287 2.28854 2.58206 3.17782 3.40423 3.58321 3.86578 3.89904 3.90698 3.95630 4.02568 4.06763 4.22118 4.23233 4.25402 4.31523 4.44220 4.45459 4.54316 4.60222 4.62357 4.66623 4.74371 4.84449 4.87857 4.90005 4.95573 4.98371 5.00785 5.06418 5.11891 5.21006 5.22239 5.24878 5.49736 5.52768 5.59786 5.65035 5.94736 6.29864 6.53712 7.19319 7.31308 7.36418 8.14420 8.37997 9.30847 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022964 B = 0.001863 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.996103 B =15025.833924 C =15478.387126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.297 6.297 3 C 0.195 3.805 4 C -0.235 4.235 5 C 0.013 3.987 6 C -0.021 4.021 7 C -0.128 4.128 8 C 0.507 3.493 9 O -0.573 6.573 10 N -0.607 5.607 11 C 0.062 3.938 12 C 0.136 3.864 13 C -0.077 4.077 14 C -0.109 4.109 15 C -0.127 4.127 16 C 0.162 3.838 17 N -0.738 5.738 18 C -0.244 4.244 19 H 0.074 0.926 20 C -0.077 4.077 21 N -0.970 5.970 22 Si 0.973 3.027 23 H -0.290 1.290 24 H -0.295 1.295 25 H -0.269 1.269 26 O 0.091 5.909 27 N -0.431 5.431 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.133 0.867 31 H 0.197 0.803 32 H 0.108 0.892 33 H 0.097 0.903 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.067 0.933 41 H 0.056 0.944 42 H 0.025 0.975 43 H 0.036 0.964 44 H 0.061 0.939 45 H 0.029 0.971 46 H 0.076 0.924 47 H 0.026 0.974 48 H 0.009 0.991 49 H 0.376 0.624 50 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.958 -2.391 -0.850 30.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.204 6.204 3 C -0.002 4.002 4 C -0.257 4.257 5 C -0.050 4.050 6 C -0.060 4.060 7 C -0.168 4.168 8 C 0.297 3.703 9 O -0.453 6.453 10 N -0.339 5.339 11 C -0.079 4.079 12 C 0.012 3.988 13 C -0.078 4.078 14 C -0.166 4.166 15 C -0.184 4.184 16 C 0.035 3.965 17 N -0.382 5.382 18 C -0.376 4.376 19 H 0.092 0.908 20 C -0.269 4.269 21 N -0.621 5.621 22 Si 0.802 3.198 23 H -0.217 1.217 24 H -0.221 1.221 25 H -0.194 1.194 26 O 0.032 5.968 27 N -0.159 5.159 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.151 0.849 31 H 0.214 0.786 32 H 0.126 0.874 33 H 0.116 0.884 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.111 0.889 39 H 0.116 0.884 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.045 0.955 43 H 0.055 0.945 44 H 0.080 0.920 45 H 0.048 0.952 46 H 0.094 0.906 47 H 0.044 0.956 48 H 0.027 0.973 49 H 0.210 0.790 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -30.763 -1.950 -0.338 30.827 hybrid contribution 1.742 -0.621 0.241 1.865 sum -29.022 -2.571 -0.097 29.135 Atomic orbital electron populations 1.23294 0.75385 1.05929 1.02189 1.86189 1.24145 1.20784 1.89284 1.22364 0.91793 0.85830 1.00223 1.22140 0.94159 0.96263 1.13127 1.24447 0.87863 0.93186 0.99515 1.19925 0.88007 1.00290 0.97752 1.21689 0.95104 1.02246 0.97746 1.20992 0.86229 0.79978 0.83102 1.90743 1.65558 1.56673 1.32327 1.47837 1.25024 1.53831 1.07234 1.22252 0.99309 1.01983 0.84402 1.21304 0.81911 0.92330 1.03284 1.21010 0.94241 0.96378 0.96190 1.21558 0.99657 0.98700 0.96690 1.21808 1.01244 0.99163 0.96204 1.20754 0.86274 0.92281 0.97239 1.42571 1.01139 1.05381 1.89102 1.19661 0.84840 0.92205 1.40846 0.90838 1.25535 1.01674 0.95709 1.03942 1.69819 1.30121 1.02377 1.59756 0.85147 0.79969 0.77396 0.77293 1.21737 1.22115 1.19366 1.84779 1.12849 1.29990 1.69208 1.74125 1.16329 0.97144 1.28316 0.92519 0.92261 0.84900 0.78580 0.87355 0.88408 0.86130 0.86207 0.90576 0.90096 0.88944 0.88395 0.91467 0.92501 0.95549 0.94468 0.91976 0.95218 0.90561 0.95563 0.97340 0.79049 0.94097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.73 113.37 1.22 1.52 16 2 O -0.30 -5.43 10.57 -90.31 -0.95 -6.38 16 3 C 0.20 3.83 8.01 85.79 0.69 4.52 16 4 C -0.24 -3.68 11.11 22.50 0.25 -3.43 16 5 C 0.01 0.20 6.73 25.00 0.17 0.37 16 6 C -0.02 -0.28 5.07 29.85 0.15 -0.13 16 7 C -0.13 -1.44 4.23 29.85 0.13 -1.31 16 8 C 0.51 10.08 6.07 87.66 0.53 10.61 16 9 O -0.57 -16.46 13.77 -3.01 -0.04 -16.50 16 10 N -0.61 -11.03 2.40 -846.76 -2.03 -13.06 16 11 C 0.06 0.62 9.15 127.77 1.17 1.79 16 12 C 0.14 3.26 4.60 86.38 0.40 3.66 16 13 C -0.08 -2.40 0.60 -52.18 -0.03 -2.43 16 14 C -0.11 -3.83 6.97 71.98 0.50 -3.33 16 15 C -0.13 -3.63 7.05 71.98 0.51 -3.13 16 16 C 0.16 6.53 5.15 86.38 0.44 6.97 16 17 N -0.74 -38.03 5.00 -343.44 -1.72 -39.75 16 18 C -0.24 -13.86 9.99 84.03 0.84 -13.02 16 19 H 0.07 4.03 7.83 -2.91 -0.02 4.00 16 20 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 21 N -0.97 -60.14 13.06 21.65 0.28 -59.85 16 22 Si 0.97 46.87 29.55 68.60 2.03 48.90 16 23 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 24 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 25 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 26 O 0.09 1.71 11.19 71.21 0.80 2.51 16 27 N -0.43 -9.06 11.54 -172.61 -1.99 -11.05 16 28 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.20 2.23 8.06 -2.91 -0.02 2.21 16 32 H 0.11 1.52 8.10 -2.39 -0.02 1.50 16 33 H 0.10 1.38 8.10 -2.39 -0.02 1.36 16 34 H 0.12 0.88 8.11 -2.39 -0.02 0.86 16 35 H 0.12 0.91 7.40 -2.39 -0.02 0.90 16 36 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.08 0.87 6.05 -2.39 -0.01 0.85 16 38 H 0.09 0.54 6.44 -2.39 -0.02 0.53 16 39 H 0.10 1.93 8.07 -2.39 -0.02 1.91 16 40 H 0.07 1.88 7.42 -2.38 -0.02 1.87 16 41 H 0.06 1.75 6.15 -2.39 -0.01 1.73 16 42 H 0.03 1.08 6.86 -2.39 -0.02 1.06 16 43 H 0.04 1.43 7.73 -2.39 -0.02 1.41 16 44 H 0.06 1.61 8.08 -2.39 -0.02 1.59 16 45 H 0.03 1.07 6.86 -2.39 -0.02 1.06 16 46 H 0.08 1.70 5.99 -2.39 -0.01 1.68 16 47 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 49 H 0.38 20.56 5.36 -92.71 -0.50 20.06 16 50 H 0.25 15.03 8.31 -92.70 -0.77 14.26 16 Total: -1.00 -76.23 399.14 4.25 -71.98 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: 0.45 Total: 24.56 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: 7.43 Total: -1.35 kcal Atomic # 7 Polarization: -118.26 SS G_CDS: -5.46 Total: -123.71 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.20 Total: -20.37 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -76.23 4.25 -71.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700440469.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.997 kcal (2) G-P(sol) polarization free energy of solvation -76.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds